data_5HJ9
#
_model_server_result.job_id            IY12MXX63YOKC-FdoXV-LA 
_model_server_result.datetime_utc      '2024-12-11 07:29:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    5HJ9 
#
_exptl.entry_id    5HJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HJ9 
_cell.length_a            89.092 
_cell.length_b            89.092 
_cell.length_c            113.6 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 1 2 
A,B,C,D,E,F,G,H,I,J,K,L 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 115 A HIS 114 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 A OD2 ASP 138 A ASP 137 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc3 A OD1 ASP 138 A ASP 137 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc4 A ND1 HIS 140 A HIS 139 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc5 A OD2 ASP 142 A ASP 141 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc6 A OD2 ASP 244 A ASP 243 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc7 A OD2 ASP 244 A ASP 243 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc8 A OD1 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc9 A OD2 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc10 B MN MN . A MN 401 1_555 D O8 X7A . A X7A 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc11 B MN MN . A MN 401 1_555 D O9 X7A . A X7A 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc12 C MN MN . A MN 402 1_555 D O9 X7A . A X7A 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5HJ9 
_atom_sites.fract_transf_matrix[1][1]    0.011224 
_atom_sites.fract_transf_matrix[1][2]    0.00648 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012961 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 401 400 MN MN . 
C 2 MN A 1 402 401 MN MN . 
D 3 X7A A 1 403 500 X7A X7A . 
E 4 GOL A 1 404 501 GOL GOL . 
F 5 SO4 A 1 405 1 SO4 SO4 . 
G 6 EDO A 1 406 401 EDO EDO . 
H 6 EDO A 1 407 402 EDO EDO . 
I 6 EDO A 1 408 403 EDO EDO . 
J 7 PGE A 1 409 1430 PGE PGE . 
K 7 PGE A 1 410 1431 PGE PGE . 
L 8 HOH A 1 501 217 HOH HOH . 
L 8 HOH A 2 502 58 HOH HOH . 
L 8 HOH A 3 503 230 HOH HOH . 
L 8 HOH A 4 504 309 HOH HOH . 
L 8 HOH A 5 505 212 HOH HOH . 
L 8 HOH A 6 506 248 HOH HOH . 
L 8 HOH A 7 507 209 HOH HOH . 
L 8 HOH A 8 508 299 HOH HOH . 
L 8 HOH A 9 509 76 HOH HOH . 
L 8 HOH A 10 510 62 HOH HOH . 
L 8 HOH A 11 511 308 HOH HOH . 
L 8 HOH A 12 512 41 HOH HOH . 
L 8 HOH A 13 513 207 HOH HOH . 
L 8 HOH A 14 514 296 HOH HOH . 
L 8 HOH A 15 515 35 HOH HOH . 
L 8 HOH A 16 516 247 HOH HOH . 
L 8 HOH A 17 517 27 HOH HOH . 
L 8 HOH A 18 518 14 HOH HOH . 
L 8 HOH A 19 519 2 HOH HOH . 
L 8 HOH A 20 520 13 HOH HOH . 
L 8 HOH A 21 521 305 HOH HOH . 
L 8 HOH A 22 522 124 HOH HOH . 
L 8 HOH A 23 523 8 HOH HOH . 
L 8 HOH A 24 524 46 HOH HOH . 
L 8 HOH A 25 525 38 HOH HOH . 
L 8 HOH A 26 526 243 HOH HOH . 
L 8 HOH A 27 527 40 HOH HOH . 
L 8 HOH A 28 528 64 HOH HOH . 
L 8 HOH A 29 529 60 HOH HOH . 
L 8 HOH A 30 530 25 HOH HOH . 
L 8 HOH A 31 531 114 HOH HOH . 
L 8 HOH A 32 532 1 HOH HOH . 
L 8 HOH A 33 533 219 HOH HOH . 
L 8 HOH A 34 534 200 HOH HOH . 
L 8 HOH A 35 535 291 HOH HOH . 
L 8 HOH A 36 536 72 HOH HOH . 
L 8 HOH A 37 537 42 HOH HOH . 
L 8 HOH A 38 538 22 HOH HOH . 
L 8 HOH A 39 539 262 HOH HOH . 
L 8 HOH A 40 540 21 HOH HOH . 
L 8 HOH A 41 541 310 HOH HOH . 
L 8 HOH A 42 542 203 HOH HOH . 
L 8 HOH A 43 543 44 HOH HOH . 
L 8 HOH A 44 544 254 HOH HOH . 
L 8 HOH A 45 545 50 HOH HOH . 
L 8 HOH A 46 546 10 HOH HOH . 
L 8 HOH A 47 547 16 HOH HOH . 
L 8 HOH A 48 548 77 HOH HOH . 
L 8 HOH A 49 549 78 HOH HOH . 
L 8 HOH A 50 550 63 HOH HOH . 
L 8 HOH A 51 551 15 HOH HOH . 
L 8 HOH A 52 552 295 HOH HOH . 
L 8 HOH A 53 553 231 HOH HOH . 
L 8 HOH A 54 554 30 HOH HOH . 
L 8 HOH A 55 555 125 HOH HOH . 
L 8 HOH A 56 556 11 HOH HOH . 
L 8 HOH A 57 557 98 HOH HOH . 
L 8 HOH A 58 558 293 HOH HOH . 
L 8 HOH A 59 559 266 HOH HOH . 
L 8 HOH A 60 560 48 HOH HOH . 
L 8 HOH A 61 561 276 HOH HOH . 
L 8 HOH A 62 562 137 HOH HOH . 
L 8 HOH A 63 563 19 HOH HOH . 
L 8 HOH A 64 564 57 HOH HOH . 
L 8 HOH A 65 565 49 HOH HOH . 
L 8 HOH A 66 566 37 HOH HOH . 
L 8 HOH A 67 567 33 HOH HOH . 
L 8 HOH A 68 568 65 HOH HOH . 
L 8 HOH A 69 569 301 HOH HOH . 
L 8 HOH A 70 570 235 HOH HOH . 
L 8 HOH A 71 571 28 HOH HOH . 
L 8 HOH A 72 572 18 HOH HOH . 
L 8 HOH A 73 573 261 HOH HOH . 
L 8 HOH A 74 574 107 HOH HOH . 
L 8 HOH A 75 575 4 HOH HOH . 
L 8 HOH A 76 576 75 HOH HOH . 
L 8 HOH A 77 577 136 HOH HOH . 
L 8 HOH A 78 578 3 HOH HOH . 
L 8 HOH A 79 579 67 HOH HOH . 
L 8 HOH A 80 580 197 HOH HOH . 
L 8 HOH A 81 581 43 HOH HOH . 
L 8 HOH A 82 582 234 HOH HOH . 
L 8 HOH A 83 583 201 HOH HOH . 
L 8 HOH A 84 584 7 HOH HOH . 
L 8 HOH A 85 585 110 HOH HOH . 
L 8 HOH A 86 586 133 HOH HOH . 
L 8 HOH A 87 587 286 HOH HOH . 
L 8 HOH A 88 588 39 HOH HOH . 
L 8 HOH A 89 589 47 HOH HOH . 
L 8 HOH A 90 590 218 HOH HOH . 
L 8 HOH A 91 591 32 HOH HOH . 
L 8 HOH A 92 592 228 HOH HOH . 
L 8 HOH A 93 593 26 HOH HOH . 
L 8 HOH A 94 594 194 HOH HOH . 
L 8 HOH A 95 595 237 HOH HOH . 
L 8 HOH A 96 596 29 HOH HOH . 
L 8 HOH A 97 597 9 HOH HOH . 
L 8 HOH A 98 598 66 HOH HOH . 
L 8 HOH A 99 599 55 HOH HOH . 
L 8 HOH A 100 600 210 HOH HOH . 
L 8 HOH A 101 601 24 HOH HOH . 
L 8 HOH A 102 602 100 HOH HOH . 
L 8 HOH A 103 603 206 HOH HOH . 
L 8 HOH A 104 604 54 HOH HOH . 
L 8 HOH A 105 605 113 HOH HOH . 
L 8 HOH A 106 606 73 HOH HOH . 
L 8 HOH A 107 607 270 HOH HOH . 
L 8 HOH A 108 608 71 HOH HOH . 
L 8 HOH A 109 609 20 HOH HOH . 
L 8 HOH A 110 610 191 HOH HOH . 
L 8 HOH A 111 611 285 HOH HOH . 
L 8 HOH A 112 612 97 HOH HOH . 
L 8 HOH A 113 613 198 HOH HOH . 
L 8 HOH A 114 614 249 HOH HOH . 
L 8 HOH A 115 615 268 HOH HOH . 
L 8 HOH A 116 616 34 HOH HOH . 
L 8 HOH A 117 617 12 HOH HOH . 
L 8 HOH A 118 618 104 HOH HOH . 
L 8 HOH A 119 619 53 HOH HOH . 
L 8 HOH A 120 620 222 HOH HOH . 
L 8 HOH A 121 621 272 HOH HOH . 
L 8 HOH A 122 622 17 HOH HOH . 
L 8 HOH A 123 623 45 HOH HOH . 
L 8 HOH A 124 624 108 HOH HOH . 
L 8 HOH A 125 625 160 HOH HOH . 
L 8 HOH A 126 626 304 HOH HOH . 
L 8 HOH A 127 627 223 HOH HOH . 
L 8 HOH A 128 628 61 HOH HOH . 
L 8 HOH A 129 629 264 HOH HOH . 
L 8 HOH A 130 630 109 HOH HOH . 
L 8 HOH A 131 631 287 HOH HOH . 
L 8 HOH A 132 632 169 HOH HOH . 
L 8 HOH A 133 633 208 HOH HOH . 
L 8 HOH A 134 634 179 HOH HOH . 
L 8 HOH A 135 635 297 HOH HOH . 
L 8 HOH A 136 636 23 HOH HOH . 
L 8 HOH A 137 637 225 HOH HOH . 
L 8 HOH A 138 638 224 HOH HOH . 
L 8 HOH A 139 639 88 HOH HOH . 
L 8 HOH A 140 640 263 HOH HOH . 
L 8 HOH A 141 641 102 HOH HOH . 
L 8 HOH A 142 642 284 HOH HOH . 
L 8 HOH A 143 643 154 HOH HOH . 
L 8 HOH A 144 644 52 HOH HOH . 
L 8 HOH A 145 645 292 HOH HOH . 
L 8 HOH A 146 646 105 HOH HOH . 
L 8 HOH A 147 647 290 HOH HOH . 
L 8 HOH A 148 648 51 HOH HOH . 
L 8 HOH A 149 649 211 HOH HOH . 
L 8 HOH A 150 650 298 HOH HOH . 
L 8 HOH A 151 651 221 HOH HOH . 
L 8 HOH A 152 652 313 HOH HOH . 
L 8 HOH A 153 653 242 HOH HOH . 
L 8 HOH A 154 654 282 HOH HOH . 
L 8 HOH A 155 655 253 HOH HOH . 
L 8 HOH A 156 656 302 HOH HOH . 
L 8 HOH A 157 657 90 HOH HOH . 
L 8 HOH A 158 658 74 HOH HOH . 
L 8 HOH A 159 659 238 HOH HOH . 
L 8 HOH A 160 660 250 HOH HOH . 
L 8 HOH A 161 661 278 HOH HOH . 
L 8 HOH A 162 662 252 HOH HOH . 
L 8 HOH A 163 663 202 HOH HOH . 
L 8 HOH A 164 664 166 HOH HOH . 
L 8 HOH A 165 665 239 HOH HOH . 
L 8 HOH A 166 666 303 HOH HOH . 
L 8 HOH A 167 667 163 HOH HOH . 
L 8 HOH A 168 668 130 HOH HOH . 
L 8 HOH A 169 669 56 HOH HOH . 
L 8 HOH A 170 670 185 HOH HOH . 
L 8 HOH A 171 671 216 HOH HOH . 
L 8 HOH A 172 672 204 HOH HOH . 
L 8 HOH A 173 673 255 HOH HOH . 
L 8 HOH A 174 674 269 HOH HOH . 
L 8 HOH A 175 675 86 HOH HOH . 
L 8 HOH A 176 676 118 HOH HOH . 
L 8 HOH A 177 677 314 HOH HOH . 
L 8 HOH A 178 678 213 HOH HOH . 
L 8 HOH A 179 679 307 HOH HOH . 
L 8 HOH A 180 680 122 HOH HOH . 
L 8 HOH A 181 681 312 HOH HOH . 
L 8 HOH A 182 682 79 HOH HOH . 
L 8 HOH A 183 683 183 HOH HOH . 
L 8 HOH A 184 684 199 HOH HOH . 
L 8 HOH A 185 685 300 HOH HOH . 
L 8 HOH A 186 686 311 HOH HOH . 
L 8 HOH A 187 687 271 HOH HOH . 
L 8 HOH A 188 688 257 HOH HOH . 
L 8 HOH A 189 689 281 HOH HOH . 
L 8 HOH A 190 690 205 HOH HOH . 
L 8 HOH A 191 691 229 HOH HOH . 
L 8 HOH A 192 692 306 HOH HOH . 
L 8 HOH A 193 693 116 HOH HOH . 
L 8 HOH A 194 694 283 HOH HOH . 
L 8 HOH A 195 695 233 HOH HOH . 
L 8 HOH A 196 696 131 HOH HOH . 
L 8 HOH A 197 697 119 HOH HOH . 
L 8 HOH A 198 698 215 HOH HOH . 
L 8 HOH A 199 699 190 HOH HOH . 
L 8 HOH A 200 700 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 6 -1.434 -2.039 47.282 0.72 17.04 ? C1 EDO 408 A 1 
HETATM 2 O O1 EDO . . . I 6 -1.343 -1.923 48.707 0.72 16.89 ? O1 EDO 408 A 1 
HETATM 3 C C2 EDO . . . I 6 -0.183 -2.748 46.818 0.72 16.58 ? C2 EDO 408 A 1 
HETATM 4 O O2 EDO . . . I 6 0.873 -1.78 46.858 0.72 15.63 ? O2 EDO 408 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#