data_5HJA # _model_server_result.job_id DsFwCxnNDyVmrXKvz2plvQ _model_server_result.datetime_utc '2024-12-02 21:01:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5HJA # _exptl.entry_id 5HJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HJA _cell.length_a 88.934 _cell.length_b 88.934 _cell.length_c 113.867 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 115 A HIS 114 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 A OD2 ASP 138 A ASP 137 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A OD1 ASP 138 A ASP 137 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 A ND1 HIS 140 A HIS 139 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 A OD2 ASP 142 A ASP 141 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc6 A OD2 ASP 244 A ASP 243 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc7 A OD2 ASP 244 A ASP 243 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc8 A OD1 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc9 A OD2 ASP 246 A ASP 245 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 B MN MN . A MN 401 1_555 D O01 XA2 . A XA2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc11 B MN MN . A MN 401 1_555 D O03 XA2 . A XA2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc12 C MN MN . A MN 402 1_555 D O03 XA2 . A XA2 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HJA _atom_sites.fract_transf_matrix[1][1] 0.011244 _atom_sites.fract_transf_matrix[1][2] 0.006492 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 401 400 MN MN . C 2 MN A 1 402 401 MN MN . D 3 XA2 A 1 403 500 XA2 C2E . E 4 GOL A 1 404 501 GOL GOL . F 5 HOH A 1 501 141 HOH HOH . F 5 HOH A 2 502 171 HOH HOH . F 5 HOH A 3 503 8 HOH HOH . F 5 HOH A 4 504 35 HOH HOH . F 5 HOH A 5 505 118 HOH HOH . F 5 HOH A 6 506 76 HOH HOH . F 5 HOH A 7 507 157 HOH HOH . F 5 HOH A 8 508 108 HOH HOH . F 5 HOH A 9 509 43 HOH HOH . F 5 HOH A 10 510 44 HOH HOH . F 5 HOH A 11 511 4 HOH HOH . F 5 HOH A 12 512 146 HOH HOH . F 5 HOH A 13 513 68 HOH HOH . F 5 HOH A 14 514 48 HOH HOH . F 5 HOH A 15 515 14 HOH HOH . F 5 HOH A 16 516 25 HOH HOH . F 5 HOH A 17 517 34 HOH HOH . F 5 HOH A 18 518 50 HOH HOH . F 5 HOH A 19 519 16 HOH HOH . F 5 HOH A 20 520 178 HOH HOH . F 5 HOH A 21 521 168 HOH HOH . F 5 HOH A 22 522 69 HOH HOH . F 5 HOH A 23 523 79 HOH HOH . F 5 HOH A 24 524 13 HOH HOH . F 5 HOH A 25 525 165 HOH HOH . F 5 HOH A 26 526 11 HOH HOH . F 5 HOH A 27 527 54 HOH HOH . F 5 HOH A 28 528 58 HOH HOH . F 5 HOH A 29 529 38 HOH HOH . F 5 HOH A 30 530 51 HOH HOH . F 5 HOH A 31 531 81 HOH HOH . F 5 HOH A 32 532 156 HOH HOH . F 5 HOH A 33 533 99 HOH HOH . F 5 HOH A 34 534 26 HOH HOH . F 5 HOH A 35 535 120 HOH HOH . F 5 HOH A 36 536 53 HOH HOH . F 5 HOH A 37 537 21 HOH HOH . F 5 HOH A 38 538 52 HOH HOH . F 5 HOH A 39 539 2 HOH HOH . F 5 HOH A 40 540 6 HOH HOH . F 5 HOH A 41 541 1 HOH HOH . F 5 HOH A 42 542 33 HOH HOH . F 5 HOH A 43 543 23 HOH HOH . F 5 HOH A 44 544 126 HOH HOH . F 5 HOH A 45 545 61 HOH HOH . F 5 HOH A 46 546 83 HOH HOH . F 5 HOH A 47 547 42 HOH HOH . F 5 HOH A 48 548 7 HOH HOH . F 5 HOH A 49 549 73 HOH HOH . F 5 HOH A 50 550 3 HOH HOH . F 5 HOH A 51 551 72 HOH HOH . F 5 HOH A 52 552 155 HOH HOH . F 5 HOH A 53 553 17 HOH HOH . F 5 HOH A 54 554 46 HOH HOH . F 5 HOH A 55 555 5 HOH HOH . F 5 HOH A 56 556 60 HOH HOH . F 5 HOH A 57 557 121 HOH HOH . F 5 HOH A 58 558 180 HOH HOH . F 5 HOH A 59 559 28 HOH HOH . F 5 HOH A 60 560 59 HOH HOH . F 5 HOH A 61 561 85 HOH HOH . F 5 HOH A 62 562 24 HOH HOH . F 5 HOH A 63 563 86 HOH HOH . F 5 HOH A 64 564 22 HOH HOH . F 5 HOH A 65 565 170 HOH HOH . F 5 HOH A 66 566 140 HOH HOH . F 5 HOH A 67 567 94 HOH HOH . F 5 HOH A 68 568 75 HOH HOH . F 5 HOH A 69 569 74 HOH HOH . F 5 HOH A 70 570 55 HOH HOH . F 5 HOH A 71 571 90 HOH HOH . F 5 HOH A 72 572 78 HOH HOH . F 5 HOH A 73 573 40 HOH HOH . F 5 HOH A 74 574 133 HOH HOH . F 5 HOH A 75 575 36 HOH HOH . F 5 HOH A 76 576 27 HOH HOH . F 5 HOH A 77 577 95 HOH HOH . F 5 HOH A 78 578 103 HOH HOH . F 5 HOH A 79 579 163 HOH HOH . F 5 HOH A 80 580 45 HOH HOH . F 5 HOH A 81 581 181 HOH HOH . F 5 HOH A 82 582 65 HOH HOH . F 5 HOH A 83 583 20 HOH HOH . F 5 HOH A 84 584 80 HOH HOH . F 5 HOH A 85 585 18 HOH HOH . F 5 HOH A 86 586 84 HOH HOH . F 5 HOH A 87 587 82 HOH HOH . F 5 HOH A 88 588 30 HOH HOH . F 5 HOH A 89 589 49 HOH HOH . F 5 HOH A 90 590 96 HOH HOH . F 5 HOH A 91 591 144 HOH HOH . F 5 HOH A 92 592 134 HOH HOH . F 5 HOH A 93 593 9 HOH HOH . F 5 HOH A 94 594 152 HOH HOH . F 5 HOH A 95 595 93 HOH HOH . F 5 HOH A 96 596 10 HOH HOH . F 5 HOH A 97 597 113 HOH HOH . F 5 HOH A 98 598 32 HOH HOH . F 5 HOH A 99 599 15 HOH HOH . F 5 HOH A 100 600 12 HOH HOH . F 5 HOH A 101 601 77 HOH HOH . F 5 HOH A 102 602 57 HOH HOH . F 5 HOH A 103 603 31 HOH HOH . F 5 HOH A 104 604 124 HOH HOH . F 5 HOH A 105 605 109 HOH HOH . F 5 HOH A 106 606 37 HOH HOH . F 5 HOH A 107 607 153 HOH HOH . F 5 HOH A 108 608 145 HOH HOH . F 5 HOH A 109 609 164 HOH HOH . F 5 HOH A 110 610 122 HOH HOH . F 5 HOH A 111 611 125 HOH HOH . F 5 HOH A 112 612 137 HOH HOH . F 5 HOH A 113 613 151 HOH HOH . F 5 HOH A 114 614 89 HOH HOH . F 5 HOH A 115 615 143 HOH HOH . F 5 HOH A 116 616 104 HOH HOH . F 5 HOH A 117 617 148 HOH HOH . F 5 HOH A 118 618 92 HOH HOH . F 5 HOH A 119 619 174 HOH HOH . F 5 HOH A 120 620 160 HOH HOH . F 5 HOH A 121 621 177 HOH HOH . F 5 HOH A 122 622 142 HOH HOH . F 5 HOH A 123 623 110 HOH HOH . F 5 HOH A 124 624 147 HOH HOH . F 5 HOH A 125 625 158 HOH HOH . F 5 HOH A 126 626 159 HOH HOH . F 5 HOH A 127 627 172 HOH HOH . F 5 HOH A 128 628 173 HOH HOH . F 5 HOH A 129 629 154 HOH HOH . F 5 HOH A 130 630 116 HOH HOH . F 5 HOH A 131 631 62 HOH HOH . F 5 HOH A 132 632 176 HOH HOH . F 5 HOH A 133 633 39 HOH HOH . F 5 HOH A 134 634 161 HOH HOH . F 5 HOH A 135 635 179 HOH HOH . F 5 HOH A 136 636 19 HOH HOH . F 5 HOH A 137 637 162 HOH HOH . F 5 HOH A 138 638 114 HOH HOH . F 5 HOH A 139 639 98 HOH HOH . F 5 HOH A 140 640 97 HOH HOH . F 5 HOH A 141 641 175 HOH HOH . F 5 HOH A 142 642 88 HOH HOH . F 5 HOH A 143 643 29 HOH HOH . F 5 HOH A 144 644 166 HOH HOH . F 5 HOH A 145 645 150 HOH HOH . F 5 HOH A 146 646 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -19.594 _atom_site.Cartn_y -4.617 _atom_site.Cartn_z 33.446 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #