data_5HJD # _model_server_result.job_id Jd6xA9GYQmEfkNI3O7DA2w _model_server_result.datetime_utc '2024-11-22 17:11:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":201}' # _entry.id 5HJD # _exptl.entry_id 5HJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.06 _cell.angle_gamma 90 _cell.entry_id 5HJD _cell.length_a 91.264 _cell.length_b 101.573 _cell.length_c 102.076 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? octameric 8 author_defined_assembly 1 ? octameric 8 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,K,L,M,Q,R,S,T,U,V,W,X,Y,Z,AA,IA,JA,KA,LA,QA 1 1 E,F,G,H,J,N,O,P,BA,CA,DA,EA,FA,GA,HA,MA,NA,OA,PA,RA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 R N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 5 1_555 B SG CYS 7 C CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 121 A CYS 119 1_555 D SG CYS 121 G CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 121 C CYS 119 1_555 C SG CYS 121 E CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 7 E CYS 5 1_555 D SG CYS 7 G CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 E SG CYS 7 K CYS 5 1_555 F SG CYS 7 N CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 E SG CYS 121 K CYS 119 1_555 H SG CYS 121 T CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 F SG CYS 121 N CYS 119 1_555 G SG CYS 121 Q CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 G SG CYS 7 Q CYS 5 1_555 H SG CYS 7 T CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 I C ARG 4 L ARG 17 1_555 I N KCR 5 L KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 I C KCR 5 L KCR 18 1_555 I N GLN 6 L GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 J C ARG 4 M ARG 17 1_555 J N KCR 5 M KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 J C KCR 5 M KCR 18 1_555 J N GLN 6 M GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 K C ARG 4 B ARG 17 1_555 K N KCR 5 B KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 K C KCR 5 B KCR 18 1_555 K N GLN 6 B GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 L C ARG 4 D ARG 17 1_555 L N KCR 5 D KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 L C KCR 5 D KCR 18 1_555 L N GLN 6 D GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 M C ARG 4 F ARG 17 1_555 M N KCR 5 F KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 M C KCR 5 F KCR 18 1_555 M N GLN 6 F GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 N C ARG 4 H ARG 17 1_555 N N KCR 5 H KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 N C KCR 5 H KCR 18 1_555 N N GLN 6 H GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 O C ARG 4 I ARG 17 1_555 O N KCR 5 I KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 O C KCR 5 I KCR 18 1_555 O N GLN 6 I GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 P C ARG 4 J ARG 17 1_555 P N KCR 5 J KCR 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 P C KCR 5 J KCR 18 1_555 P N GLN 6 J GLN 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A NE2 HIS 109 A HIS 107 1_555 Q CU CU . A CU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 322 n n S O2 SO4 doub 323 n n S O3 SO4 sing 324 n n S O4 SO4 sing 325 n n # _atom_sites.entry_id 5HJD _atom_sites.fract_transf_matrix[1][1] 0.010957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002542 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010057 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 CU A 1 201 9 CU CU . R 4 SO4 A 1 202 18 SO4 SO4 . S 3 CU C 1 201 5 CU CU . T 3 CU C 1 202 6 CU CU . U 4 SO4 C 1 203 19 SO4 SO4 . V 4 SO4 E 1 201 11 SO4 SO4 . W 4 SO4 G 1 201 1 SO4 SO4 . X 4 SO4 G 1 202 8 SO4 SO4 . Y 4 SO4 G 1 203 10 SO4 SO4 . Z 4 SO4 G 1 204 17 SO4 SO4 . AA 4 SO4 G 1 205 20 SO4 SO4 . BA 3 CU K 1 201 10 CU CU . CA 4 SO4 K 1 202 6 SO4 SO4 . DA 4 SO4 N 1 201 7 SO4 SO4 . EA 4 SO4 N 1 202 9 SO4 SO4 . FA 4 SO4 Q 1 201 12 SO4 SO4 . GA 4 SO4 T 1 201 2 SO4 SO4 . HA 4 SO4 T 1 202 3 SO4 SO4 . IA 5 HOH A 1 301 40 HOH HOH . IA 5 HOH A 2 302 9 HOH HOH . IA 5 HOH A 3 303 11 HOH HOH . IA 5 HOH A 4 304 10 HOH HOH . JA 5 HOH C 1 301 15 HOH HOH . KA 5 HOH E 1 301 17 HOH HOH . KA 5 HOH E 2 302 23 HOH HOH . KA 5 HOH E 3 303 21 HOH HOH . KA 5 HOH E 4 304 12 HOH HOH . KA 5 HOH E 5 305 14 HOH HOH . KA 5 HOH E 6 306 36 HOH HOH . KA 5 HOH E 7 307 6 HOH HOH . LA 5 HOH G 1 301 22 HOH HOH . LA 5 HOH G 2 302 7 HOH HOH . LA 5 HOH G 3 303 24 HOH HOH . LA 5 HOH G 4 304 3 HOH HOH . LA 5 HOH G 5 305 25 HOH HOH . LA 5 HOH G 6 306 16 HOH HOH . LA 5 HOH G 7 307 31 HOH HOH . LA 5 HOH G 8 308 18 HOH HOH . MA 5 HOH K 1 301 39 HOH HOH . MA 5 HOH K 2 302 5 HOH HOH . MA 5 HOH K 3 303 19 HOH HOH . MA 5 HOH K 4 304 1 HOH HOH . NA 5 HOH N 1 301 35 HOH HOH . NA 5 HOH N 2 302 32 HOH HOH . OA 5 HOH Q 1 301 13 HOH HOH . OA 5 HOH Q 2 302 30 HOH HOH . OA 5 HOH Q 3 303 37 HOH HOH . OA 5 HOH Q 4 304 41 HOH HOH . PA 5 HOH T 1 301 27 HOH HOH . PA 5 HOH T 2 302 20 HOH HOH . PA 5 HOH T 3 303 8 HOH HOH . PA 5 HOH T 4 304 38 HOH HOH . PA 5 HOH T 5 305 28 HOH HOH . PA 5 HOH T 6 306 4 HOH HOH . PA 5 HOH T 7 307 33 HOH HOH . PA 5 HOH T 8 308 34 HOH HOH . PA 5 HOH T 9 309 2 HOH HOH . QA 5 HOH L 1 101 29 HOH HOH . RA 5 HOH M 1 101 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . W 4 2.477 22.366 46.228 1 97.21 ? S SO4 201 G 1 HETATM 2 O O1 SO4 . . . W 4 3.025 21.289 45.378 1 71.19 ? O1 SO4 201 G 1 HETATM 3 O O2 SO4 . . . W 4 1.019 22.213 46.305 1 74.97 ? O2 SO4 201 G 1 HETATM 4 O O3 SO4 . . . W 4 3.001 22.299 47.602 1 85.29 ? O3 SO4 201 G 1 HETATM 5 O O4 SO4 . . . W 4 2.812 23.684 45.651 1 74.92 ? O4 SO4 201 G 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #