data_5HK1
#
_model_server_result.job_id            gmdCOSev5xi-tmp4Q433PA 
_model_server_result.datetime_utc      '2024-11-22 23:11:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hk1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":308}' 
#
_entry.id    5HK1 
#
_exptl.entry_id    5HK1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HK1 
_cell.length_a            85.556 
_cell.length_b            126.062 
_cell.length_c            109.702 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 M N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 282 n n 
C10 C9 OLC doub 283 n n 
C10 C11 OLC sing 284 n n 
C9 C8 OLC sing 285 n n 
C17 C16 OLC sing 286 z n 
C11 C12 OLC sing 287 n n 
C8 C7 OLC sing 288 n n 
C24 C22 OLC sing 289 n n 
C24 O25 OLC sing 290 n n 
C16 C15 OLC sing 291 n n 
C12 C13 OLC sing 292 n n 
C7 C6 OLC sing 293 n n 
C15 C14 OLC sing 294 n n 
C13 C14 OLC sing 295 n n 
C6 C5 OLC sing 296 n n 
C5 C4 OLC sing 297 n n 
C4 C3 OLC sing 298 n n 
C3 C2 OLC sing 299 n n 
C2 C1 OLC sing 300 n n 
C21 C22 OLC sing 301 n n 
C21 O20 OLC sing 302 n n 
C1 O19 OLC doub 303 n n 
C1 O20 OLC sing 304 n n 
C22 O23 OLC sing 305 n n 
C18 H18 OLC sing 306 n n 
C18 H18A OLC sing 307 n n 
C18 H18B OLC sing 308 n n 
C10 H10 OLC sing 309 n n 
C9 H9 OLC sing 310 n n 
C17 H17 OLC sing 311 n n 
C17 H17A OLC sing 312 n n 
C11 H11 OLC sing 313 n n 
C11 H11A OLC sing 314 n n 
C8 H8 OLC sing 315 n n 
C8 H8A OLC sing 316 n n 
C24 H24 OLC sing 317 n n 
C24 H24A OLC sing 318 n n 
C16 H16 OLC sing 319 n n 
C16 H16A OLC sing 320 n n 
C12 H12 OLC sing 321 n n 
C12 H12A OLC sing 322 n n 
C7 H7 OLC sing 323 n n 
C7 H7A OLC sing 324 n n 
C15 H15 OLC sing 325 n n 
C15 H15A OLC sing 326 n n 
C13 H13 OLC sing 327 n n 
C13 H13A OLC sing 328 n n 
C6 H6 OLC sing 329 n n 
C6 H6A OLC sing 330 n n 
C14 H14 OLC sing 331 n n 
C14 H14A OLC sing 332 n n 
C5 H5 OLC sing 333 n n 
C5 H5A OLC sing 334 n n 
C4 H4 OLC sing 335 n n 
C4 H4A OLC sing 336 n n 
C3 H3 OLC sing 337 n n 
C3 H3A OLC sing 338 n n 
C2 H2 OLC sing 339 n n 
C2 H2A OLC sing 340 n n 
C21 H21 OLC sing 341 n n 
C21 H21A OLC sing 342 n n 
C22 H22 OLC sing 343 n n 
O25 HO25 OLC sing 344 n n 
O23 HO23 OLC sing 345 n n 
#
_atom_sites.entry_id                     5HK1 
_atom_sites.fract_transf_matrix[1][1]    0.011688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 61W A 1 301 1000 61W PD1 . 
E 3 SO4 A 1 302 1 SO4 SO4 . 
F 3 SO4 A 1 303 2 SO4 SO4 . 
G 3 SO4 A 1 304 6 SO4 SO4 . 
H 3 SO4 A 1 305 9 SO4 SO4 . 
I 3 SO4 A 1 306 11 SO4 SO4 . 
J 3 SO4 A 1 307 12 SO4 SO4 . 
K 3 SO4 A 1 308 14 SO4 SO4 . 
L 4 OLC A 1 309 15 OLC LIG . 
M 4 OLC A 1 310 16 OLC LIG . 
N 2 61W B 1 301 1000 61W PD1 . 
O 3 SO4 B 1 302 3 SO4 SO4 . 
P 3 SO4 B 1 303 4 SO4 SO4 . 
Q 3 SO4 B 1 304 7 SO4 SO4 . 
R 3 SO4 B 1 305 8 SO4 SO4 . 
S 2 61W C 1 301 1000 61W PD1 . 
T 3 SO4 C 1 302 5 SO4 SO4 . 
U 3 SO4 C 1 303 10 SO4 SO4 . 
V 3 SO4 C 1 304 13 SO4 SO4 . 
W 4 OLC C 1 305 17 OLC LIG . 
X 4 OLC C 1 306 18 OLC LIG . 
Y 4 OLC C 1 307 19 OLC LIG . 
Z 4 OLC C 1 308 20 OLC LIG . 
AA 4 OLC C 1 309 21 OLC LIG . 
BA 5 HOH A 1 401 146 HOH HOH . 
BA 5 HOH A 2 402 131 HOH HOH . 
BA 5 HOH A 3 403 28 HOH HOH . 
BA 5 HOH A 4 404 59 HOH HOH . 
BA 5 HOH A 5 405 45 HOH HOH . 
BA 5 HOH A 6 406 41 HOH HOH . 
BA 5 HOH A 7 407 150 HOH HOH . 
BA 5 HOH A 8 408 47 HOH HOH . 
BA 5 HOH A 9 409 132 HOH HOH . 
BA 5 HOH A 10 410 119 HOH HOH . 
BA 5 HOH A 11 411 108 HOH HOH . 
BA 5 HOH A 12 412 94 HOH HOH . 
BA 5 HOH A 13 413 126 HOH HOH . 
BA 5 HOH A 14 414 66 HOH HOH . 
BA 5 HOH A 15 415 151 HOH HOH . 
BA 5 HOH A 16 416 23 HOH HOH . 
BA 5 HOH A 17 417 39 HOH HOH . 
BA 5 HOH A 18 418 36 HOH HOH . 
BA 5 HOH A 19 419 38 HOH HOH . 
BA 5 HOH A 20 420 49 HOH HOH . 
BA 5 HOH A 21 421 157 HOH HOH . 
BA 5 HOH A 22 422 107 HOH HOH . 
BA 5 HOH A 23 423 24 HOH HOH . 
BA 5 HOH A 24 424 106 HOH HOH . 
BA 5 HOH A 25 425 12 HOH HOH . 
BA 5 HOH A 26 426 3 HOH HOH . 
BA 5 HOH A 27 427 17 HOH HOH . 
BA 5 HOH A 28 428 6 HOH HOH . 
BA 5 HOH A 29 429 77 HOH HOH . 
BA 5 HOH A 30 430 116 HOH HOH . 
BA 5 HOH A 31 431 114 HOH HOH . 
BA 5 HOH A 32 432 82 HOH HOH . 
BA 5 HOH A 33 433 69 HOH HOH . 
BA 5 HOH A 34 434 15 HOH HOH . 
BA 5 HOH A 35 435 138 HOH HOH . 
BA 5 HOH A 36 436 10 HOH HOH . 
BA 5 HOH A 37 437 26 HOH HOH . 
BA 5 HOH A 38 438 85 HOH HOH . 
BA 5 HOH A 39 439 158 HOH HOH . 
BA 5 HOH A 40 440 95 HOH HOH . 
BA 5 HOH A 41 441 5 HOH HOH . 
BA 5 HOH A 42 442 145 HOH HOH . 
BA 5 HOH A 43 443 42 HOH HOH . 
BA 5 HOH A 44 444 18 HOH HOH . 
BA 5 HOH A 45 445 73 HOH HOH . 
BA 5 HOH A 46 446 89 HOH HOH . 
BA 5 HOH A 47 447 13 HOH HOH . 
BA 5 HOH A 48 448 57 HOH HOH . 
BA 5 HOH A 49 449 148 HOH HOH . 
BA 5 HOH A 50 450 80 HOH HOH . 
BA 5 HOH A 51 451 40 HOH HOH . 
BA 5 HOH A 52 452 78 HOH HOH . 
BA 5 HOH A 53 453 155 HOH HOH . 
BA 5 HOH A 54 454 79 HOH HOH . 
BA 5 HOH A 55 455 99 HOH HOH . 
BA 5 HOH A 56 456 153 HOH HOH . 
BA 5 HOH A 57 457 152 HOH HOH . 
BA 5 HOH A 58 458 61 HOH HOH . 
CA 5 HOH B 1 401 29 HOH HOH . 
CA 5 HOH B 2 402 91 HOH HOH . 
CA 5 HOH B 3 403 105 HOH HOH . 
CA 5 HOH B 4 404 102 HOH HOH . 
CA 5 HOH B 5 405 20 HOH HOH . 
CA 5 HOH B 6 406 112 HOH HOH . 
CA 5 HOH B 7 407 30 HOH HOH . 
CA 5 HOH B 8 408 125 HOH HOH . 
CA 5 HOH B 9 409 65 HOH HOH . 
CA 5 HOH B 10 410 33 HOH HOH . 
CA 5 HOH B 11 411 31 HOH HOH . 
CA 5 HOH B 12 412 135 HOH HOH . 
CA 5 HOH B 13 413 92 HOH HOH . 
CA 5 HOH B 14 414 56 HOH HOH . 
CA 5 HOH B 15 415 104 HOH HOH . 
CA 5 HOH B 16 416 133 HOH HOH . 
CA 5 HOH B 17 417 159 HOH HOH . 
CA 5 HOH B 18 418 120 HOH HOH . 
CA 5 HOH B 19 419 60 HOH HOH . 
CA 5 HOH B 20 420 130 HOH HOH . 
CA 5 HOH B 21 421 147 HOH HOH . 
CA 5 HOH B 22 422 149 HOH HOH . 
CA 5 HOH B 23 423 84 HOH HOH . 
CA 5 HOH B 24 424 16 HOH HOH . 
CA 5 HOH B 25 425 101 HOH HOH . 
CA 5 HOH B 26 426 160 HOH HOH . 
CA 5 HOH B 27 427 113 HOH HOH . 
CA 5 HOH B 28 428 110 HOH HOH . 
CA 5 HOH B 29 429 129 HOH HOH . 
CA 5 HOH B 30 430 70 HOH HOH . 
CA 5 HOH B 31 431 71 HOH HOH . 
CA 5 HOH B 32 432 2 HOH HOH . 
CA 5 HOH B 33 433 62 HOH HOH . 
CA 5 HOH B 34 434 58 HOH HOH . 
CA 5 HOH B 35 435 124 HOH HOH . 
DA 5 HOH C 1 401 134 HOH HOH . 
DA 5 HOH C 2 402 139 HOH HOH . 
DA 5 HOH C 3 403 127 HOH HOH . 
DA 5 HOH C 4 404 143 HOH HOH . 
DA 5 HOH C 5 405 8 HOH HOH . 
DA 5 HOH C 6 406 100 HOH HOH . 
DA 5 HOH C 7 407 35 HOH HOH . 
DA 5 HOH C 8 408 136 HOH HOH . 
DA 5 HOH C 9 409 34 HOH HOH . 
DA 5 HOH C 10 410 90 HOH HOH . 
DA 5 HOH C 11 411 75 HOH HOH . 
DA 5 HOH C 12 412 1 HOH HOH . 
DA 5 HOH C 13 413 122 HOH HOH . 
DA 5 HOH C 14 414 7 HOH HOH . 
DA 5 HOH C 15 415 22 HOH HOH . 
DA 5 HOH C 16 416 52 HOH HOH . 
DA 5 HOH C 17 417 53 HOH HOH . 
DA 5 HOH C 18 418 54 HOH HOH . 
DA 5 HOH C 19 419 50 HOH HOH . 
DA 5 HOH C 20 420 43 HOH HOH . 
DA 5 HOH C 21 421 72 HOH HOH . 
DA 5 HOH C 22 422 128 HOH HOH . 
DA 5 HOH C 23 423 86 HOH HOH . 
DA 5 HOH C 24 424 64 HOH HOH . 
DA 5 HOH C 25 425 9 HOH HOH . 
DA 5 HOH C 26 426 4 HOH HOH . 
DA 5 HOH C 27 427 83 HOH HOH . 
DA 5 HOH C 28 428 109 HOH HOH . 
DA 5 HOH C 29 429 93 HOH HOH . 
DA 5 HOH C 30 430 141 HOH HOH . 
DA 5 HOH C 31 431 19 HOH HOH . 
DA 5 HOH C 32 432 68 HOH HOH . 
DA 5 HOH C 33 433 32 HOH HOH . 
DA 5 HOH C 34 434 46 HOH HOH . 
DA 5 HOH C 35 435 55 HOH HOH . 
DA 5 HOH C 36 436 48 HOH HOH . 
DA 5 HOH C 37 437 51 HOH HOH . 
DA 5 HOH C 38 438 81 HOH HOH . 
DA 5 HOH C 39 439 21 HOH HOH . 
DA 5 HOH C 40 440 88 HOH HOH . 
DA 5 HOH C 41 441 37 HOH HOH . 
DA 5 HOH C 42 442 96 HOH HOH . 
DA 5 HOH C 43 443 63 HOH HOH . 
DA 5 HOH C 44 444 44 HOH HOH . 
DA 5 HOH C 45 445 103 HOH HOH . 
DA 5 HOH C 46 446 115 HOH HOH . 
DA 5 HOH C 47 447 74 HOH HOH . 
DA 5 HOH C 48 448 67 HOH HOH . 
DA 5 HOH C 49 449 97 HOH HOH . 
DA 5 HOH C 50 450 144 HOH HOH . 
DA 5 HOH C 51 451 142 HOH HOH . 
DA 5 HOH C 52 452 14 HOH HOH . 
DA 5 HOH C 53 453 117 HOH HOH . 
DA 5 HOH C 54 454 87 HOH HOH . 
DA 5 HOH C 55 455 25 HOH HOH . 
DA 5 HOH C 56 456 137 HOH HOH . 
DA 5 HOH C 57 457 140 HOH HOH . 
DA 5 HOH C 58 458 76 HOH HOH . 
DA 5 HOH C 59 459 11 HOH HOH . 
DA 5 HOH C 60 460 121 HOH HOH . 
DA 5 HOH C 61 461 27 HOH HOH . 
DA 5 HOH C 62 462 123 HOH HOH . 
DA 5 HOH C 63 463 111 HOH HOH . 
DA 5 HOH C 64 464 154 HOH HOH . 
DA 5 HOH C 65 465 156 HOH HOH . 
DA 5 HOH C 66 466 118 HOH HOH . 
DA 5 HOH C 67 467 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . Z 4 -30.231 46.687 -32.858 1 110.06 ? C24 OLC 308 C 1 
HETATM 2 C C5 OLC . . . Z 4 -28.324 47.744 -24.797 1 99.13 ? C5 OLC 308 C 1 
HETATM 3 C C4 OLC . . . Z 4 -27.242 47.358 -25.781 1 102.27 ? C4 OLC 308 C 1 
HETATM 4 C C3 OLC . . . Z 4 -27.708 46.313 -26.772 1 108.09 ? C3 OLC 308 C 1 
HETATM 5 C C2 OLC . . . Z 4 -28.925 46.758 -27.555 1 116.61 ? C2 OLC 308 C 1 
HETATM 6 C C21 OLC . . . Z 4 -29.414 47.109 -30.571 1 91.02 ? C21 OLC 308 C 1 
HETATM 7 C C1 OLC . . . Z 4 -28.634 47.907 -28.498 1 113.78 ? C1 OLC 308 C 1 
HETATM 8 C C22 OLC . . . Z 4 -29.243 47.474 -32.028 1 93.8 ? C22 OLC 308 C 1 
HETATM 9 O O19 OLC . . . Z 4 -28.669 49.054 -28.096 1 108.66 ? O19 OLC 308 C 1 
HETATM 10 O O25 OLC . . . Z 4 -31.167 47.589 -33.404 1 121.21 ? O25 OLC 308 C 1 
HETATM 11 O O23 OLC . . . Z 4 -29.48 48.852 -32.2 1 83.77 ? O23 OLC 308 C 1 
HETATM 12 O O20 OLC . . . Z 4 -28.334 47.648 -29.847 1 102.09 ? O20 OLC 308 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           12 
#