data_5HK2 # _model_server_result.job_id FRp-UFNB2v7EbjfXPXM_jA _model_server_result.datetime_utc '2024-11-02 18:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 5HK2 # _exptl.entry_id 5HK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 420.287 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(1-benzylpiperidin-4-yl)-4-iodobenzamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HK2 _cell.length_a 85.7 _cell.length_b 126.8 _cell.length_c 110.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 R N N # _chem_comp.formula 'C19 H21 I N2 O' _chem_comp.formula_weight 420.287 _chem_comp.id 61V _chem_comp.mon_nstd_flag . _chem_comp.name N-(1-benzylpiperidin-4-yl)-4-iodobenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAT CAS 61V doub 1 n y CAT CAU 61V sing 2 n y CAS CAR 61V sing 3 n y CAU CAV 61V doub 4 n y CAR CAQ 61V sing 5 n n CAR CAW 61V doub 6 n y CAQ NAC 61V sing 7 n n CAV CAW 61V sing 8 n y CAD NAC 61V sing 9 n n CAD CAE 61V sing 10 n n NAC CAB 61V sing 11 n n CAE CAF 61V sing 12 n n CAB CAA 61V sing 13 n n CAA CAF 61V sing 14 n n CAF NAG 61V sing 15 n n OAI CAH 61V doub 16 n n NAG CAH 61V sing 17 n n CAH CAJ 61V sing 18 n n CAJ CAK 61V doub 19 n y CAJ CAO 61V sing 20 n y CAK CAL 61V sing 21 n y CAO CAN 61V doub 22 n y CAL CAM 61V doub 23 n y CAN CAM 61V sing 24 n y CAM IAP 61V sing 25 n n CAA H1 61V sing 26 n n CAA H2 61V sing 27 n n CAB H3 61V sing 28 n n CAB H4 61V sing 29 n n CAD H5 61V sing 30 n n CAD H6 61V sing 31 n n CAE H7 61V sing 32 n n CAE H8 61V sing 33 n n CAF H9 61V sing 34 n n CAK H10 61V sing 35 n n CAL H11 61V sing 36 n n CAN H12 61V sing 37 n n CAO H13 61V sing 38 n n CAQ H14 61V sing 39 n n CAQ H15 61V sing 40 n n CAS H16 61V sing 41 n n CAT H17 61V sing 42 n n CAU H18 61V sing 43 n n CAV H19 61V sing 44 n n CAW H20 61V sing 45 n n NAG H22 61V sing 46 n n # _atom_sites.entry_id 5HK2 _atom_sites.fract_transf_matrix[1][1] 0.011669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 61V A 1 301 1000 61V IBP . E 3 SO4 A 1 302 3 SO4 SO4 . F 3 SO4 A 1 303 7 SO4 SO4 . G 3 SO4 A 1 304 9 SO4 SO4 . H 2 61V B 1 301 1000 61V IBP . I 3 SO4 B 1 302 4 SO4 SO4 . J 3 SO4 B 1 303 5 SO4 SO4 . K 3 SO4 B 1 304 11 SO4 SO4 . L 3 SO4 B 1 305 12 SO4 SO4 . M 4 OLC B 1 306 2 OLC LIG . N 4 OLC B 1 307 3 OLC LIG . O 4 OLC B 1 308 4 OLC LIG . P 4 OLC B 1 309 5 OLC LIG . Q 4 OLC B 1 310 7 OLC LIG . R 2 61V C 1 301 1000 61V IBP . S 3 SO4 C 1 302 1 SO4 SO4 . T 3 SO4 C 1 303 2 SO4 SO4 . U 3 SO4 C 1 304 6 SO4 SO4 . V 3 SO4 C 1 305 8 SO4 SO4 . W 3 SO4 C 1 306 10 SO4 SO4 . X 4 OLC C 1 307 1 OLC LIG . Y 4 OLC C 1 308 6 OLC LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 61V . . . H 2 -15.094 44.924 -36.605 1 79.53 ? CAA 61V 301 B 1 HETATM 2 C CAB 61V . . . H 2 -16.362 45.135 -37.414 1 79.95 ? CAB 61V 301 B 1 HETATM 3 C CAD 61V . . . H 2 -15.136 46.202 -39.184 1 78.04 ? CAD 61V 301 B 1 HETATM 4 C CAE 61V . . . H 2 -13.824 45.95 -38.472 1 79.78 ? CAE 61V 301 B 1 HETATM 5 C CAF 61V . . . H 2 -14.058 45.983 -36.965 1 79.31 ? CAF 61V 301 B 1 HETATM 6 C CAH 61V . . . H 2 -13.648 48.363 -36.629 1 78.06 ? CAH 61V 301 B 1 HETATM 7 C CAJ 61V . . . H 2 -14.141 49.595 -36.239 1 76.43 ? CAJ 61V 301 B 1 HETATM 8 C CAK 61V . . . H 2 -15.357 49.72 -35.578 1 75.29 ? CAK 61V 301 B 1 HETATM 9 C CAL 61V . . . H 2 -15.799 50.986 -35.207 1 76.9 ? CAL 61V 301 B 1 HETATM 10 C CAM 61V . . . H 2 -15.028 52.109 -35.498 1 77.74 ? CAM 61V 301 B 1 HETATM 11 C CAN 61V . . . H 2 -13.815 51.975 -36.158 1 78.02 ? CAN 61V 301 B 1 HETATM 12 C CAO 61V . . . H 2 -13.373 50.715 -36.526 1 77.01 ? CAO 61V 301 B 1 HETATM 13 C CAQ 61V . . . H 2 -15.555 43.843 -39.328 1 80.2 ? CAQ 61V 301 B 1 HETATM 14 C CAR 61V . . . H 2 -16.471 42.813 -39.172 1 81.54 ? CAR 61V 301 B 1 HETATM 15 C CAS 61V . . . H 2 -17.701 42.869 -39.818 1 83.12 ? CAS 61V 301 B 1 HETATM 16 C CAT 61V . . . H 2 -18.619 41.837 -39.662 1 81.46 ? CAT 61V 301 B 1 HETATM 17 C CAU 61V . . . H 2 -18.303 40.748 -38.86 1 81.9 ? CAU 61V 301 B 1 HETATM 18 C CAV 61V . . . H 2 -17.072 40.692 -38.217 1 84.34 ? CAV 61V 301 B 1 HETATM 19 C CAW 61V . . . H 2 -16.154 41.724 -38.373 1 82.56 ? CAW 61V 301 B 1 HETATM 20 N NAC 61V . . . H 2 -16.096 45.135 -38.865 1 80.32 ? NAC 61V 301 B 1 HETATM 21 N NAG 61V . . . H 2 -14.501 47.329 -36.568 1 76.27 ? NAG 61V 301 B 1 HETATM 22 O OAI 61V . . . H 2 -12.478 48.271 -36.997 1 81.36 ? OAI 61V 301 B 1 HETATM 23 I IAP 61V . . . H 2 -15.667 54.02 -34.952 1 221.63 ? IAP 61V 301 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #