data_5HK2 # _model_server_result.job_id ObtRIDg3EXn2U6cea8CuBQ _model_server_result.datetime_utc '2024-11-02 18:18:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":306}' # _entry.id 5HK2 # _exptl.entry_id 5HK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HK2 _cell.length_a 85.7 _cell.length_b 126.8 _cell.length_c 110.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 X N N ? 4 Y N N # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 281 n n C10 C9 OLC doub 282 n n C10 C11 OLC sing 283 n n C9 C8 OLC sing 284 n n C17 C16 OLC sing 285 z n C11 C12 OLC sing 286 n n C8 C7 OLC sing 287 n n C24 C22 OLC sing 288 n n C24 O25 OLC sing 289 n n C16 C15 OLC sing 290 n n C12 C13 OLC sing 291 n n C7 C6 OLC sing 292 n n C15 C14 OLC sing 293 n n C13 C14 OLC sing 294 n n C6 C5 OLC sing 295 n n C5 C4 OLC sing 296 n n C4 C3 OLC sing 297 n n C3 C2 OLC sing 298 n n C2 C1 OLC sing 299 n n C21 C22 OLC sing 300 n n C21 O20 OLC sing 301 n n C1 O19 OLC doub 302 n n C1 O20 OLC sing 303 n n C22 O23 OLC sing 304 n n C18 H18 OLC sing 305 n n C18 H18A OLC sing 306 n n C18 H18B OLC sing 307 n n C10 H10 OLC sing 308 n n C9 H9 OLC sing 309 n n C17 H17 OLC sing 310 n n C17 H17A OLC sing 311 n n C11 H11 OLC sing 312 n n C11 H11A OLC sing 313 n n C8 H8 OLC sing 314 n n C8 H8A OLC sing 315 n n C24 H24 OLC sing 316 n n C24 H24A OLC sing 317 n n C16 H16 OLC sing 318 n n C16 H16A OLC sing 319 n n C12 H12 OLC sing 320 n n C12 H12A OLC sing 321 n n C7 H7 OLC sing 322 n n C7 H7A OLC sing 323 n n C15 H15 OLC sing 324 n n C15 H15A OLC sing 325 n n C13 H13 OLC sing 326 n n C13 H13A OLC sing 327 n n C6 H6 OLC sing 328 n n C6 H6A OLC sing 329 n n C14 H14 OLC sing 330 n n C14 H14A OLC sing 331 n n C5 H5 OLC sing 332 n n C5 H5A OLC sing 333 n n C4 H4 OLC sing 334 n n C4 H4A OLC sing 335 n n C3 H3 OLC sing 336 n n C3 H3A OLC sing 337 n n C2 H2 OLC sing 338 n n C2 H2A OLC sing 339 n n C21 H21 OLC sing 340 n n C21 H21A OLC sing 341 n n C22 H22 OLC sing 342 n n O25 HO25 OLC sing 343 n n O23 HO23 OLC sing 344 n n # _atom_sites.entry_id 5HK2 _atom_sites.fract_transf_matrix[1][1] 0.011669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 61V A 1 301 1000 61V IBP . E 3 SO4 A 1 302 3 SO4 SO4 . F 3 SO4 A 1 303 7 SO4 SO4 . G 3 SO4 A 1 304 9 SO4 SO4 . H 2 61V B 1 301 1000 61V IBP . I 3 SO4 B 1 302 4 SO4 SO4 . J 3 SO4 B 1 303 5 SO4 SO4 . K 3 SO4 B 1 304 11 SO4 SO4 . L 3 SO4 B 1 305 12 SO4 SO4 . M 4 OLC B 1 306 2 OLC LIG . N 4 OLC B 1 307 3 OLC LIG . O 4 OLC B 1 308 4 OLC LIG . P 4 OLC B 1 309 5 OLC LIG . Q 4 OLC B 1 310 7 OLC LIG . R 2 61V C 1 301 1000 61V IBP . S 3 SO4 C 1 302 1 SO4 SO4 . T 3 SO4 C 1 303 2 SO4 SO4 . U 3 SO4 C 1 304 6 SO4 SO4 . V 3 SO4 C 1 305 8 SO4 SO4 . W 3 SO4 C 1 306 10 SO4 SO4 . X 4 OLC C 1 307 1 OLC LIG . Y 4 OLC C 1 308 6 OLC LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . M 4 -25.971 64.288 -33.768 1 88.85 ? C24 OLC 306 B 1 HETATM 2 C C4 OLC . . . M 4 -20.043 64.071 -28.466 1 92.11 ? C4 OLC 306 B 1 HETATM 3 C C3 OLC . . . M 4 -21.001 63.233 -29.264 1 96.56 ? C3 OLC 306 B 1 HETATM 4 C C2 OLC . . . M 4 -20.798 63.396 -30.749 1 97.03 ? C2 OLC 306 B 1 HETATM 5 C C21 OLC . . . M 4 -23.835 64.45 -32.51 1 90.83 ? C21 OLC 306 B 1 HETATM 6 C C1 OLC . . . M 4 -21.837 64.325 -31.333 1 95.6 ? C1 OLC 306 B 1 HETATM 7 C C22 OLC . . . M 4 -24.521 63.877 -33.723 1 92.82 ? C22 OLC 306 B 1 HETATM 8 O O19 OLC . . . M 4 -22.144 65.334 -30.738 1 101.32 ? O19 OLC 306 B 1 HETATM 9 O O25 OLC . . . M 4 -26.389 64.121 -35.103 1 91.11 ? O25 OLC 306 B 1 HETATM 10 O O23 OLC . . . M 4 -23.877 64.371 -34.868 1 102.11 ? O23 OLC 306 B 1 HETATM 11 O O20 OLC . . . M 4 -22.489 64.032 -32.537 1 90.92 ? O20 OLC 306 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #