data_5HK2
#
_model_server_result.job_id            4lJ0ByCpBS_DjYLDvZpLOA 
_model_server_result.datetime_utc      '2024-11-25 01:42:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":306}' 
#
_entry.id    5HK2 
#
_exptl.entry_id    5HK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HK2 
_cell.length_a            85.7 
_cell.length_b            126.8 
_cell.length_c            110.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 X N N 
? 4 Y N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 281 n n 
C10 C9 OLC doub 282 n n 
C10 C11 OLC sing 283 n n 
C9 C8 OLC sing 284 n n 
C17 C16 OLC sing 285 z n 
C11 C12 OLC sing 286 n n 
C8 C7 OLC sing 287 n n 
C24 C22 OLC sing 288 n n 
C24 O25 OLC sing 289 n n 
C16 C15 OLC sing 290 n n 
C12 C13 OLC sing 291 n n 
C7 C6 OLC sing 292 n n 
C15 C14 OLC sing 293 n n 
C13 C14 OLC sing 294 n n 
C6 C5 OLC sing 295 n n 
C5 C4 OLC sing 296 n n 
C4 C3 OLC sing 297 n n 
C3 C2 OLC sing 298 n n 
C2 C1 OLC sing 299 n n 
C21 C22 OLC sing 300 n n 
C21 O20 OLC sing 301 n n 
C1 O19 OLC doub 302 n n 
C1 O20 OLC sing 303 n n 
C22 O23 OLC sing 304 n n 
C18 H18 OLC sing 305 n n 
C18 H18A OLC sing 306 n n 
C18 H18B OLC sing 307 n n 
C10 H10 OLC sing 308 n n 
C9 H9 OLC sing 309 n n 
C17 H17 OLC sing 310 n n 
C17 H17A OLC sing 311 n n 
C11 H11 OLC sing 312 n n 
C11 H11A OLC sing 313 n n 
C8 H8 OLC sing 314 n n 
C8 H8A OLC sing 315 n n 
C24 H24 OLC sing 316 n n 
C24 H24A OLC sing 317 n n 
C16 H16 OLC sing 318 n n 
C16 H16A OLC sing 319 n n 
C12 H12 OLC sing 320 n n 
C12 H12A OLC sing 321 n n 
C7 H7 OLC sing 322 n n 
C7 H7A OLC sing 323 n n 
C15 H15 OLC sing 324 n n 
C15 H15A OLC sing 325 n n 
C13 H13 OLC sing 326 n n 
C13 H13A OLC sing 327 n n 
C6 H6 OLC sing 328 n n 
C6 H6A OLC sing 329 n n 
C14 H14 OLC sing 330 n n 
C14 H14A OLC sing 331 n n 
C5 H5 OLC sing 332 n n 
C5 H5A OLC sing 333 n n 
C4 H4 OLC sing 334 n n 
C4 H4A OLC sing 335 n n 
C3 H3 OLC sing 336 n n 
C3 H3A OLC sing 337 n n 
C2 H2 OLC sing 338 n n 
C2 H2A OLC sing 339 n n 
C21 H21 OLC sing 340 n n 
C21 H21A OLC sing 341 n n 
C22 H22 OLC sing 342 n n 
O25 HO25 OLC sing 343 n n 
O23 HO23 OLC sing 344 n n 
#
_atom_sites.entry_id                     5HK2 
_atom_sites.fract_transf_matrix[1][1]    0.011669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009025 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 61V A 1 301 1000 61V IBP . 
E 3 SO4 A 1 302 3 SO4 SO4 . 
F 3 SO4 A 1 303 7 SO4 SO4 . 
G 3 SO4 A 1 304 9 SO4 SO4 . 
H 2 61V B 1 301 1000 61V IBP . 
I 3 SO4 B 1 302 4 SO4 SO4 . 
J 3 SO4 B 1 303 5 SO4 SO4 . 
K 3 SO4 B 1 304 11 SO4 SO4 . 
L 3 SO4 B 1 305 12 SO4 SO4 . 
M 4 OLC B 1 306 2 OLC LIG . 
N 4 OLC B 1 307 3 OLC LIG . 
O 4 OLC B 1 308 4 OLC LIG . 
P 4 OLC B 1 309 5 OLC LIG . 
Q 4 OLC B 1 310 7 OLC LIG . 
R 2 61V C 1 301 1000 61V IBP . 
S 3 SO4 C 1 302 1 SO4 SO4 . 
T 3 SO4 C 1 303 2 SO4 SO4 . 
U 3 SO4 C 1 304 6 SO4 SO4 . 
V 3 SO4 C 1 305 8 SO4 SO4 . 
W 3 SO4 C 1 306 10 SO4 SO4 . 
X 4 OLC C 1 307 1 OLC LIG . 
Y 4 OLC C 1 308 6 OLC LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . M 4 -25.971 64.288 -33.768 1 88.85 ? C24 OLC 306 B 1 
HETATM 2 C C4 OLC . . . M 4 -20.043 64.071 -28.466 1 92.11 ? C4 OLC 306 B 1 
HETATM 3 C C3 OLC . . . M 4 -21.001 63.233 -29.264 1 96.56 ? C3 OLC 306 B 1 
HETATM 4 C C2 OLC . . . M 4 -20.798 63.396 -30.749 1 97.03 ? C2 OLC 306 B 1 
HETATM 5 C C21 OLC . . . M 4 -23.835 64.45 -32.51 1 90.83 ? C21 OLC 306 B 1 
HETATM 6 C C1 OLC . . . M 4 -21.837 64.325 -31.333 1 95.6 ? C1 OLC 306 B 1 
HETATM 7 C C22 OLC . . . M 4 -24.521 63.877 -33.723 1 92.82 ? C22 OLC 306 B 1 
HETATM 8 O O19 OLC . . . M 4 -22.144 65.334 -30.738 1 101.32 ? O19 OLC 306 B 1 
HETATM 9 O O25 OLC . . . M 4 -26.389 64.121 -35.103 1 91.11 ? O25 OLC 306 B 1 
HETATM 10 O O23 OLC . . . M 4 -23.877 64.371 -34.868 1 102.11 ? O23 OLC 306 B 1 
HETATM 11 O O20 OLC . . . M 4 -22.489 64.032 -32.537 1 90.92 ? O20 OLC 306 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
#