data_5HK7 # _model_server_result.job_id pYGkAwrefbFJHL_R52cBlQ _model_server_result.datetime_utc '2024-11-25 02:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 5HK7 # _exptl.entry_id 5HK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 437.551 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HK7 _cell.length_a 153.51 _cell.length_b 160.52 _cell.length_c 166.37 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 R N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id L _struct_conn.ptnr1_label_atom_id NA _struct_conn.ptnr1_label_comp_id NA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id NA _struct_conn.ptnr1_auth_seq_id 304 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id V _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.515 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H44 N O6 P' _chem_comp.formula_weight 437.551 _chem_comp.id VVA _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C37 C38 VVA sing 363 n n C37 C36 VVA sing 364 n n C38 C39 VVA sing 365 n n O31 C31 VVA doub 366 n n C35 C36 VVA sing 367 n n C35 C34 VVA sing 368 n n C33 C32 VVA sing 369 n n C33 C34 VVA sing 370 n n C31 C32 VVA sing 371 n n C31 O2 VVA sing 372 n n O2 C2 VVA sing 373 n n C2 C1 VVA sing 374 n n C1 O3P VVA sing 375 n n O3P P VVA sing 376 n n O1P P VVA doub 377 n n O2P P VVA sing 378 n n P O4P VVA sing 379 n n O4P C4 VVA sing 380 n n C4 C5 VVA sing 381 n n C5 N6 VVA sing 382 n n O2P H1 VVA sing 383 n n C4 H2 VVA sing 384 n n C4 H3 VVA sing 385 n n C5 H4 VVA sing 386 n n C5 H5 VVA sing 387 n n N6 H6 VVA sing 388 n n N6 H7 VVA sing 389 n n C1 H9 VVA sing 390 n n C1 H10 VVA sing 391 n n C2 H11 VVA sing 392 n n C2 H12 VVA sing 393 n n C32 H13 VVA sing 394 n n C32 H14 VVA sing 395 n n C33 H15 VVA sing 396 n n C33 H16 VVA sing 397 n n C34 H17 VVA sing 398 n n C34 H18 VVA sing 399 n n C35 H19 VVA sing 400 n n C35 H20 VVA sing 401 n n C36 H21 VVA sing 402 n n C36 H22 VVA sing 403 n n C37 H23 VVA sing 404 n n C37 H24 VVA sing 405 n n C38 H25 VVA sing 406 n n C38 H26 VVA sing 407 n n C39 H27 VVA sing 408 n n C39 H28 VVA sing 409 n n C39 C40 VVA sing 410 n n C40 C41 VVA sing 411 n n C41 C42 VVA sing 412 n n C42 C43 VVA sing 413 n n C43 C44 VVA sing 414 n n C44 C45 VVA sing 415 n n C45 C46 VVA sing 416 n n C46 C47 VVA sing 417 n n C40 H8 VVA sing 418 n n C40 H29 VVA sing 419 n n C41 H30 VVA sing 420 n n C41 H31 VVA sing 421 n n C42 H32 VVA sing 422 n n C42 H33 VVA sing 423 n n C43 H34 VVA sing 424 n n C43 H35 VVA sing 425 n n C44 H36 VVA sing 426 n n C44 H37 VVA sing 427 n n C45 H38 VVA sing 428 n n C45 H39 VVA sing 429 n n C46 H40 VVA sing 430 n n C46 H41 VVA sing 431 n n C47 H42 VVA sing 432 n n C47 H43 VVA sing 433 n n C47 H44 VVA sing 434 n n # _atom_sites.entry_id 5HK7 _atom_sites.fract_transf_matrix[1][1] 0.006514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CL A 1 301 1 CL CL . F 3 VVA A 1 302 6085 VVA VVA . G 3 VVA A 1 303 6085 VVA VVI . H 2 CL A 1 304 1 CL CL . I 3 VVA B 1 301 6085 VVA VVB . J 3 VVA B 1 302 6085 VVA VVC . K 3 VVA B 1 303 6085 VVA VVJ . L 4 NA B 1 304 1 NA NA . M 3 VVA C 1 301 6085 VVA VVD . N 3 VVA C 1 302 6085 VVA VVE . O 3 VVA C 1 303 6085 VVA VVF . P 3 VVA C 1 304 6085 VVA VVG . Q 4 NA C 1 305 1 NA NA . R 3 VVA D 1 301 6085 VVA VVH . S 5 HOH A 1 401 11 HOH HOH . T 5 HOH B 1 401 10 HOH HOH . U 5 HOH C 1 401 9 HOH HOH . V 5 HOH D 1 401 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1P VVA . . . I 3 2.882 19.533 58.109 1 127.16 ? O1P VVA 301 B 1 HETATM 2 P P VVA . . . I 3 1.373 19.359 57.961 1 167.68 ? P VVA 301 B 1 HETATM 3 O O2P VVA . . . I 3 0.495 20.073 58.965 1 197.82 ? O2P VVA 301 B 1 HETATM 4 O O4P VVA . . . I 3 0.976 17.785 58.173 1 133.44 ? O4P VVA 301 B 1 HETATM 5 C C4 VVA . . . I 3 1.06 17.1 59.428 1 82.98 ? C4 VVA 301 B 1 HETATM 6 C C5 VVA . . . I 3 0.199 15.872 59.262 1 73.98 ? C5 VVA 301 B 1 HETATM 7 N N6 VVA . . . I 3 -0.142 15.493 60.608 1 85.31 ? N6 VVA 301 B 1 HETATM 8 O O3P VVA . . . I 3 0.889 19.864 56.459 1 135.92 ? O3P VVA 301 B 1 HETATM 9 C C1 VVA . . . I 3 1.203 21.202 56.007 1 122.05 ? C1 VVA 301 B 1 HETATM 10 C C2 VVA . . . I 3 0.785 21.613 54.578 1 121.49 ? C2 VVA 301 B 1 HETATM 11 O O2 VVA . . . I 3 1.889 21.948 53.666 1 123.61 ? O2 VVA 301 B 1 HETATM 12 C C31 VVA . . . I 3 3.19 22.664 53.92 1 105.28 ? C31 VVA 301 B 1 HETATM 13 O O31 VVA . . . I 3 3.154 23.647 54.634 1 103.48 ? O31 VVA 301 B 1 HETATM 14 C C32 VVA . . . I 3 4.574 22.266 53.341 1 83.47 ? C32 VVA 301 B 1 HETATM 15 C C33 VVA . . . I 3 5.769 23.089 53.881 1 68.1 ? C33 VVA 301 B 1 HETATM 16 C C34 VVA . . . I 3 7.037 22.658 53.148 1 68.51 ? C34 VVA 301 B 1 HETATM 17 C C35 VVA . . . I 3 8.163 23.698 53.175 1 76.65 ? C35 VVA 301 B 1 HETATM 18 C C36 VVA . . . I 3 9.197 23.498 52.044 1 75.79 ? C36 VVA 301 B 1 HETATM 19 C C37 VVA . . . I 3 10.028 24.745 51.664 1 85.94 ? C37 VVA 301 B 1 HETATM 20 C C38 VVA . . . I 3 11.444 24.485 51.08 1 96.37 ? C38 VVA 301 B 1 HETATM 21 C C39 VVA . . . I 3 11.586 24.116 49.594 1 79.47 ? C39 VVA 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #