data_5HK7
#
_model_server_result.job_id            2U2Vx56viRHn7DRkwJKjZQ 
_model_server_result.datetime_utc      '2024-11-25 02:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hk7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    5HK7 
#
_exptl.entry_id    5HK7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              437.551 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HK7 
_cell.length_a            153.51 
_cell.length_b            160.52 
_cell.length_c            166.37 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HK7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            L 
_struct_conn.ptnr1_label_atom_id            NA 
_struct_conn.ptnr1_label_comp_id            NA 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             NA 
_struct_conn.ptnr1_auth_seq_id              304 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            V 
_struct_conn.ptnr2_label_atom_id            O 
_struct_conn.ptnr2_label_comp_id            HOH 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             D 
_struct_conn.ptnr2_auth_comp_id             HOH 
_struct_conn.ptnr2_auth_seq_id              401 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.515 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C21 H44 N O6 P' 
_chem_comp.formula_weight    437.551 
_chem_comp.id                VVA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C37 C38 VVA sing 363 n n 
C37 C36 VVA sing 364 n n 
C38 C39 VVA sing 365 n n 
O31 C31 VVA doub 366 n n 
C35 C36 VVA sing 367 n n 
C35 C34 VVA sing 368 n n 
C33 C32 VVA sing 369 n n 
C33 C34 VVA sing 370 n n 
C31 C32 VVA sing 371 n n 
C31 O2 VVA sing 372 n n 
O2 C2 VVA sing 373 n n 
C2 C1 VVA sing 374 n n 
C1 O3P VVA sing 375 n n 
O3P P VVA sing 376 n n 
O1P P VVA doub 377 n n 
O2P P VVA sing 378 n n 
P O4P VVA sing 379 n n 
O4P C4 VVA sing 380 n n 
C4 C5 VVA sing 381 n n 
C5 N6 VVA sing 382 n n 
O2P H1 VVA sing 383 n n 
C4 H2 VVA sing 384 n n 
C4 H3 VVA sing 385 n n 
C5 H4 VVA sing 386 n n 
C5 H5 VVA sing 387 n n 
N6 H6 VVA sing 388 n n 
N6 H7 VVA sing 389 n n 
C1 H9 VVA sing 390 n n 
C1 H10 VVA sing 391 n n 
C2 H11 VVA sing 392 n n 
C2 H12 VVA sing 393 n n 
C32 H13 VVA sing 394 n n 
C32 H14 VVA sing 395 n n 
C33 H15 VVA sing 396 n n 
C33 H16 VVA sing 397 n n 
C34 H17 VVA sing 398 n n 
C34 H18 VVA sing 399 n n 
C35 H19 VVA sing 400 n n 
C35 H20 VVA sing 401 n n 
C36 H21 VVA sing 402 n n 
C36 H22 VVA sing 403 n n 
C37 H23 VVA sing 404 n n 
C37 H24 VVA sing 405 n n 
C38 H25 VVA sing 406 n n 
C38 H26 VVA sing 407 n n 
C39 H27 VVA sing 408 n n 
C39 H28 VVA sing 409 n n 
C39 C40 VVA sing 410 n n 
C40 C41 VVA sing 411 n n 
C41 C42 VVA sing 412 n n 
C42 C43 VVA sing 413 n n 
C43 C44 VVA sing 414 n n 
C44 C45 VVA sing 415 n n 
C45 C46 VVA sing 416 n n 
C46 C47 VVA sing 417 n n 
C40 H8 VVA sing 418 n n 
C40 H29 VVA sing 419 n n 
C41 H30 VVA sing 420 n n 
C41 H31 VVA sing 421 n n 
C42 H32 VVA sing 422 n n 
C42 H33 VVA sing 423 n n 
C43 H34 VVA sing 424 n n 
C43 H35 VVA sing 425 n n 
C44 H36 VVA sing 426 n n 
C44 H37 VVA sing 427 n n 
C45 H38 VVA sing 428 n n 
C45 H39 VVA sing 429 n n 
C46 H40 VVA sing 430 n n 
C46 H41 VVA sing 431 n n 
C47 H42 VVA sing 432 n n 
C47 H43 VVA sing 433 n n 
C47 H44 VVA sing 434 n n 
#
_atom_sites.entry_id                     5HK7 
_atom_sites.fract_transf_matrix[1][1]    0.006514 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00623 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006011 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CL A 1 301 1 CL CL . 
F 3 VVA A 1 302 6085 VVA VVA . 
G 3 VVA A 1 303 6085 VVA VVI . 
H 2 CL A 1 304 1 CL CL . 
I 3 VVA B 1 301 6085 VVA VVB . 
J 3 VVA B 1 302 6085 VVA VVC . 
K 3 VVA B 1 303 6085 VVA VVJ . 
L 4 NA B 1 304 1 NA NA . 
M 3 VVA C 1 301 6085 VVA VVD . 
N 3 VVA C 1 302 6085 VVA VVE . 
O 3 VVA C 1 303 6085 VVA VVF . 
P 3 VVA C 1 304 6085 VVA VVG . 
Q 4 NA C 1 305 1 NA NA . 
R 3 VVA D 1 301 6085 VVA VVH . 
S 5 HOH A 1 401 11 HOH HOH . 
T 5 HOH B 1 401 10 HOH HOH . 
U 5 HOH C 1 401 9 HOH HOH . 
V 5 HOH D 1 401 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1P VVA . . . J 3 16.01 27.977 79.126 1 131.12 ? O1P VVA 302 B 1 
HETATM 2 P P VVA . . . J 3 15.158 28.395 80.322 1 168.64 ? P VVA 302 B 1 
HETATM 3 O O2P VVA . . . J 3 15.628 28.047 81.718 1 187.29 ? O2P VVA 302 B 1 
HETATM 4 O O4P VVA . . . J 3 13.712 27.641 80.145 1 139.24 ? O4P VVA 302 B 1 
HETATM 5 C C4 VVA . . . J 3 13.56 26.226 79.914 1 95.56 ? C4 VVA 302 B 1 
HETATM 6 C C5 VVA . . . J 3 12.178 25.751 80.349 1 84.52 ? C5 VVA 302 B 1 
HETATM 7 N N6 VVA . . . J 3 12.124 25.44 81.761 1 69.02 ? N6 VVA 302 B 1 
HETATM 8 O O3P VVA . . . J 3 14.936 30.037 80.324 1 161.02 ? O3P VVA 302 B 1 
HETATM 9 C C1 VVA . . . J 3 15.688 31.052 81.062 1 143.36 ? C1 VVA 302 B 1 
HETATM 10 C C2 VVA . . . J 3 16.148 32.3 80.254 1 124.89 ? C2 VVA 302 B 1 
HETATM 11 O O2 VVA . . . J 3 16.317 32.027 78.832 1 130.88 ? O2 VVA 302 B 1 
HETATM 12 C C31 VVA . . . J 3 17.325 32.564 77.869 1 118.54 ? C31 VVA 302 B 1 
HETATM 13 O O31 VVA . . . J 3 18.095 33.409 78.282 1 141.55 ? O31 VVA 302 B 1 
HETATM 14 C C32 VVA . . . J 3 17.443 32.126 76.389 1 90.71 ? C32 VVA 302 B 1 
HETATM 15 C C33 VVA . . . J 3 18.802 32.468 75.734 1 73.08 ? C33 VVA 302 B 1 
HETATM 16 C C34 VVA . . . J 3 18.891 32.194 74.219 1 71.82 ? C34 VVA 302 B 1 
HETATM 17 C C35 VVA . . . J 3 20.231 32.484 73.501 1 68.99 ? C35 VVA 302 B 1 
HETATM 18 C C36 VVA . . . J 3 20.146 32.469 71.958 1 69.23 ? C36 VVA 302 B 1 
HETATM 19 C C37 VVA . . . J 3 20.73 33.714 71.244 1 75.96 ? C37 VVA 302 B 1 
HETATM 20 C C38 VVA . . . J 3 21.322 33.517 69.817 1 79.84 ? C38 VVA 302 B 1 
HETATM 21 C C39 VVA . . . J 3 20.901 34.49 68.687 1 67.94 ? C39 VVA 302 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#