data_5HKW # _model_server_result.job_id lHKGcaAUDblY-7XRLxekoA _model_server_result.datetime_utc '2024-12-26 21:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5HKW # _exptl.entry_id 5HKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.13 _cell.angle_gamma 90 _cell.entry_id 5HKW _cell.length_a 159.116 _cell.length_b 106.523 _cell.length_c 84.984 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 186 A ASP 229 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc2 A OG1 THR 188 A THR 231 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc3 A OD1 ASN 190 A ASN 233 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 A O TYR 192 A TYR 235 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A OE1 GLU 197 A GLU 240 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 A OE2 GLU 197 A GLU 240 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 D NA NA . A NA 401 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc8 B OD1 ASP 186 B ASP 229 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc9 B OG1 THR 188 B THR 231 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc10 B OD1 ASN 190 B ASN 233 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 B O TYR 192 B TYR 235 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc12 B OE1 GLU 197 B GLU 240 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc13 B OE2 GLU 197 B GLU 240 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc14 E NA NA . B NA 401 1_555 H O HOH . B HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc15 C OD1 ASP 186 C ASP 229 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc16 C OG1 THR 188 C THR 231 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc17 C OD1 ASN 190 C ASN 233 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc18 C O TYR 192 C TYR 235 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc19 C OE1 GLU 197 C GLU 240 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc20 C OE2 GLU 197 C GLU 240 1_555 F NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc21 F NA NA . C NA 401 1_555 I O HOH . C HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HKW _atom_sites.fract_transf_matrix[1][1] 0.006285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000234 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 401 2 NA NA . E 2 NA B 1 401 1 NA NA . F 2 NA C 1 401 3 NA NA . G 3 HOH A 1 501 138 HOH HOH . G 3 HOH A 2 502 95 HOH HOH . G 3 HOH A 3 503 50 HOH HOH . G 3 HOH A 4 504 40 HOH HOH . G 3 HOH A 5 505 190 HOH HOH . G 3 HOH A 6 506 73 HOH HOH . G 3 HOH A 7 507 224 HOH HOH . G 3 HOH A 8 508 25 HOH HOH . G 3 HOH A 9 509 94 HOH HOH . G 3 HOH A 10 510 89 HOH HOH . G 3 HOH A 11 511 1 HOH HOH . G 3 HOH A 12 512 76 HOH HOH . G 3 HOH A 13 513 70 HOH HOH . G 3 HOH A 14 514 140 HOH HOH . G 3 HOH A 15 515 132 HOH HOH . G 3 HOH A 16 516 166 HOH HOH . G 3 HOH A 17 517 20 HOH HOH . G 3 HOH A 18 518 178 HOH HOH . G 3 HOH A 19 519 168 HOH HOH . G 3 HOH A 20 520 151 HOH HOH . G 3 HOH A 21 521 3 HOH HOH . G 3 HOH A 22 522 102 HOH HOH . G 3 HOH A 23 523 37 HOH HOH . G 3 HOH A 24 524 206 HOH HOH . G 3 HOH A 25 525 41 HOH HOH . G 3 HOH A 26 526 14 HOH HOH . G 3 HOH A 27 527 7 HOH HOH . G 3 HOH A 28 528 188 HOH HOH . G 3 HOH A 29 529 12 HOH HOH . G 3 HOH A 30 530 169 HOH HOH . G 3 HOH A 31 531 162 HOH HOH . G 3 HOH A 32 532 33 HOH HOH . G 3 HOH A 33 533 229 HOH HOH . G 3 HOH A 34 534 203 HOH HOH . G 3 HOH A 35 535 175 HOH HOH . G 3 HOH A 36 536 193 HOH HOH . G 3 HOH A 37 537 167 HOH HOH . G 3 HOH A 38 538 226 HOH HOH . G 3 HOH A 39 539 195 HOH HOH . G 3 HOH A 40 540 117 HOH HOH . G 3 HOH A 41 541 11 HOH HOH . G 3 HOH A 42 542 42 HOH HOH . G 3 HOH A 43 543 164 HOH HOH . G 3 HOH A 44 544 239 HOH HOH . G 3 HOH A 45 545 235 HOH HOH . G 3 HOH A 46 546 199 HOH HOH . G 3 HOH A 47 547 145 HOH HOH . G 3 HOH A 48 548 131 HOH HOH . G 3 HOH A 49 549 233 HOH HOH . G 3 HOH A 50 550 174 HOH HOH . G 3 HOH A 51 551 57 HOH HOH . G 3 HOH A 52 552 165 HOH HOH . G 3 HOH A 53 553 114 HOH HOH . G 3 HOH A 54 554 152 HOH HOH . G 3 HOH A 55 555 127 HOH HOH . G 3 HOH A 56 556 142 HOH HOH . G 3 HOH A 57 557 44 HOH HOH . G 3 HOH A 58 558 113 HOH HOH . G 3 HOH A 59 559 156 HOH HOH . G 3 HOH A 60 560 215 HOH HOH . G 3 HOH A 61 561 155 HOH HOH . G 3 HOH A 62 562 38 HOH HOH . G 3 HOH A 63 563 75 HOH HOH . G 3 HOH A 64 564 31 HOH HOH . G 3 HOH A 65 565 110 HOH HOH . G 3 HOH A 66 566 68 HOH HOH . G 3 HOH A 67 567 209 HOH HOH . G 3 HOH A 68 568 121 HOH HOH . G 3 HOH A 69 569 196 HOH HOH . G 3 HOH A 70 570 128 HOH HOH . G 3 HOH A 71 571 170 HOH HOH . G 3 HOH A 72 572 99 HOH HOH . G 3 HOH A 73 573 85 HOH HOH . G 3 HOH A 74 574 86 HOH HOH . G 3 HOH A 75 575 78 HOH HOH . G 3 HOH A 76 576 48 HOH HOH . G 3 HOH A 77 577 150 HOH HOH . G 3 HOH A 78 578 186 HOH HOH . G 3 HOH A 79 579 93 HOH HOH . G 3 HOH A 80 580 143 HOH HOH . G 3 HOH A 81 581 148 HOH HOH . G 3 HOH A 82 582 52 HOH HOH . G 3 HOH A 83 583 8 HOH HOH . G 3 HOH A 84 584 210 HOH HOH . G 3 HOH A 85 585 15 HOH HOH . G 3 HOH A 86 586 201 HOH HOH . G 3 HOH A 87 587 119 HOH HOH . G 3 HOH A 88 588 126 HOH HOH . G 3 HOH A 89 589 58 HOH HOH . G 3 HOH A 90 590 245 HOH HOH . H 3 HOH B 1 501 176 HOH HOH . H 3 HOH B 2 502 158 HOH HOH . H 3 HOH B 3 503 106 HOH HOH . H 3 HOH B 4 504 53 HOH HOH . H 3 HOH B 5 505 218 HOH HOH . H 3 HOH B 6 506 23 HOH HOH . H 3 HOH B 7 507 139 HOH HOH . H 3 HOH B 8 508 64 HOH HOH . H 3 HOH B 9 509 144 HOH HOH . H 3 HOH B 10 510 88 HOH HOH . H 3 HOH B 11 511 81 HOH HOH . H 3 HOH B 12 512 183 HOH HOH . H 3 HOH B 13 513 220 HOH HOH . H 3 HOH B 14 514 225 HOH HOH . H 3 HOH B 15 515 214 HOH HOH . H 3 HOH B 16 516 65 HOH HOH . H 3 HOH B 17 517 130 HOH HOH . H 3 HOH B 18 518 51 HOH HOH . H 3 HOH B 19 519 43 HOH HOH . H 3 HOH B 20 520 6 HOH HOH . H 3 HOH B 21 521 222 HOH HOH . H 3 HOH B 22 522 77 HOH HOH . H 3 HOH B 23 523 2 HOH HOH . H 3 HOH B 24 524 179 HOH HOH . H 3 HOH B 25 525 202 HOH HOH . H 3 HOH B 26 526 17 HOH HOH . H 3 HOH B 27 527 92 HOH HOH . H 3 HOH B 28 528 146 HOH HOH . H 3 HOH B 29 529 172 HOH HOH . H 3 HOH B 30 530 137 HOH HOH . H 3 HOH B 31 531 207 HOH HOH . H 3 HOH B 32 532 107 HOH HOH . H 3 HOH B 33 533 29 HOH HOH . H 3 HOH B 34 534 187 HOH HOH . H 3 HOH B 35 535 108 HOH HOH . H 3 HOH B 36 536 211 HOH HOH . H 3 HOH B 37 537 4 HOH HOH . H 3 HOH B 38 538 157 HOH HOH . H 3 HOH B 39 539 118 HOH HOH . H 3 HOH B 40 540 60 HOH HOH . H 3 HOH B 41 541 30 HOH HOH . H 3 HOH B 42 542 240 HOH HOH . H 3 HOH B 43 543 185 HOH HOH . H 3 HOH B 44 544 84 HOH HOH . H 3 HOH B 45 545 124 HOH HOH . H 3 HOH B 46 546 236 HOH HOH . H 3 HOH B 47 547 18 HOH HOH . H 3 HOH B 48 548 105 HOH HOH . H 3 HOH B 49 549 47 HOH HOH . H 3 HOH B 50 550 36 HOH HOH . H 3 HOH B 51 551 120 HOH HOH . H 3 HOH B 52 552 34 HOH HOH . H 3 HOH B 53 553 104 HOH HOH . H 3 HOH B 54 554 103 HOH HOH . H 3 HOH B 55 555 82 HOH HOH . H 3 HOH B 56 556 231 HOH HOH . H 3 HOH B 57 557 182 HOH HOH . H 3 HOH B 58 558 149 HOH HOH . H 3 HOH B 59 559 39 HOH HOH . H 3 HOH B 60 560 28 HOH HOH . H 3 HOH B 61 561 115 HOH HOH . H 3 HOH B 62 562 22 HOH HOH . H 3 HOH B 63 563 35 HOH HOH . H 3 HOH B 64 564 228 HOH HOH . H 3 HOH B 65 565 87 HOH HOH . H 3 HOH B 66 566 79 HOH HOH . H 3 HOH B 67 567 59 HOH HOH . H 3 HOH B 68 568 204 HOH HOH . H 3 HOH B 69 569 116 HOH HOH . H 3 HOH B 70 570 9 HOH HOH . H 3 HOH B 71 571 161 HOH HOH . H 3 HOH B 72 572 217 HOH HOH . H 3 HOH B 73 573 66 HOH HOH . H 3 HOH B 74 574 189 HOH HOH . H 3 HOH B 75 575 55 HOH HOH . H 3 HOH B 76 576 125 HOH HOH . H 3 HOH B 77 577 32 HOH HOH . H 3 HOH B 78 578 83 HOH HOH . H 3 HOH B 79 579 19 HOH HOH . H 3 HOH B 80 580 208 HOH HOH . H 3 HOH B 81 581 97 HOH HOH . H 3 HOH B 82 582 96 HOH HOH . H 3 HOH B 83 583 216 HOH HOH . H 3 HOH B 84 584 141 HOH HOH . H 3 HOH B 85 585 212 HOH HOH . H 3 HOH B 86 586 232 HOH HOH . H 3 HOH B 87 587 242 HOH HOH . H 3 HOH B 88 588 49 HOH HOH . H 3 HOH B 89 589 243 HOH HOH . H 3 HOH B 90 590 192 HOH HOH . H 3 HOH B 91 591 244 HOH HOH . H 3 HOH B 92 592 181 HOH HOH . H 3 HOH B 93 593 241 HOH HOH . H 3 HOH B 94 594 194 HOH HOH . I 3 HOH C 1 501 230 HOH HOH . I 3 HOH C 2 502 154 HOH HOH . I 3 HOH C 3 503 153 HOH HOH . I 3 HOH C 4 504 10 HOH HOH . I 3 HOH C 5 505 238 HOH HOH . I 3 HOH C 6 506 246 HOH HOH . I 3 HOH C 7 507 213 HOH HOH . I 3 HOH C 8 508 111 HOH HOH . I 3 HOH C 9 509 56 HOH HOH . I 3 HOH C 10 510 234 HOH HOH . I 3 HOH C 11 511 135 HOH HOH . I 3 HOH C 12 512 219 HOH HOH . I 3 HOH C 13 513 54 HOH HOH . I 3 HOH C 14 514 63 HOH HOH . I 3 HOH C 15 515 69 HOH HOH . I 3 HOH C 16 516 27 HOH HOH . I 3 HOH C 17 517 205 HOH HOH . I 3 HOH C 18 518 129 HOH HOH . I 3 HOH C 19 519 171 HOH HOH . I 3 HOH C 20 520 16 HOH HOH . I 3 HOH C 21 521 147 HOH HOH . I 3 HOH C 22 522 80 HOH HOH . I 3 HOH C 23 523 61 HOH HOH . I 3 HOH C 24 524 13 HOH HOH . I 3 HOH C 25 525 160 HOH HOH . I 3 HOH C 26 526 198 HOH HOH . I 3 HOH C 27 527 200 HOH HOH . I 3 HOH C 28 528 177 HOH HOH . I 3 HOH C 29 529 184 HOH HOH . I 3 HOH C 30 530 133 HOH HOH . I 3 HOH C 31 531 159 HOH HOH . I 3 HOH C 32 532 180 HOH HOH . I 3 HOH C 33 533 74 HOH HOH . I 3 HOH C 34 534 26 HOH HOH . I 3 HOH C 35 535 223 HOH HOH . I 3 HOH C 36 536 21 HOH HOH . I 3 HOH C 37 537 62 HOH HOH . I 3 HOH C 38 538 136 HOH HOH . I 3 HOH C 39 539 163 HOH HOH . I 3 HOH C 40 540 112 HOH HOH . I 3 HOH C 41 541 173 HOH HOH . I 3 HOH C 42 542 109 HOH HOH . I 3 HOH C 43 543 90 HOH HOH . I 3 HOH C 44 544 134 HOH HOH . I 3 HOH C 45 545 98 HOH HOH . I 3 HOH C 46 546 5 HOH HOH . I 3 HOH C 47 547 191 HOH HOH . I 3 HOH C 48 548 72 HOH HOH . I 3 HOH C 49 549 101 HOH HOH . I 3 HOH C 50 550 221 HOH HOH . I 3 HOH C 51 551 100 HOH HOH . I 3 HOH C 52 552 45 HOH HOH . I 3 HOH C 53 553 123 HOH HOH . I 3 HOH C 54 554 46 HOH HOH . I 3 HOH C 55 555 67 HOH HOH . I 3 HOH C 56 556 122 HOH HOH . I 3 HOH C 57 557 71 HOH HOH . I 3 HOH C 58 558 24 HOH HOH . I 3 HOH C 59 559 237 HOH HOH . I 3 HOH C 60 560 227 HOH HOH . I 3 HOH C 61 561 91 HOH HOH . I 3 HOH C 62 562 197 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -15.982 _atom_site.Cartn_y -31.944 _atom_site.Cartn_z 28.19 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #