data_5HL9 # _model_server_result.job_id EjlAxl8NjRPibjylcHWfXA _model_server_result.datetime_utc '2024-11-14 16:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5HL9 # _exptl.entry_id 5HL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HL9 _cell.length_a 62.44 _cell.length_b 63.8 _cell.length_c 299.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 453 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 510 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id AIX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AIX _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.421 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O4 S' _chem_comp.formula_weight 351.421 _chem_comp.id AIX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 AIX doub 1 n y C8 C7 AIX sing 2 n y C8 H8 AIX sing 3 n n C7 C5 AIX doub 4 n y C11 C5 AIX sing 5 n y C5 C4 AIX sing 6 n n C1 C6 AIX sing 7 n n C16 C6 AIX sing 8 n n C6 C12 AIX sing 9 n n C6 S1 AIX sing 10 n n C14 N1 AIX sing 11 n n N1 C3 AIX sing 12 n n N1 HN1 AIX sing 13 n n O2 C2 AIX doub 14 n n O1 C2 AIX sing 15 n n C2 C12 AIX sing 16 n n C12 N3 AIX sing 17 n n N3 C13 AIX sing 18 n n N3 HN3 AIX sing 19 n n C3 C4 AIX sing 20 n n C4 N2 AIX sing 21 n n C4 H4 AIX sing 22 n n C1 H1 AIX sing 23 n n C1 H1A AIX sing 24 n n C1 H1B AIX sing 25 n n C3 O3 AIX doub 26 n n C7 H7 AIX sing 27 n n C9 C10 AIX sing 28 n y C9 H9 AIX sing 29 n n C10 C11 AIX doub 30 n y C10 H10 AIX sing 31 n n C11 H11 AIX sing 32 n n C12 H12 AIX sing 33 n n S1 C13 AIX sing 34 n n C13 C14 AIX sing 35 n n C13 H13 AIX sing 36 n n C15 C14 AIX sing 37 n n C14 H14 AIX sing 38 n n O4 C15 AIX doub 39 n n C15 H15 AIX sing 40 n n C16 H16 AIX sing 41 n n C16 H16A AIX sing 42 n n C16 H16B AIX sing 43 n n N2 HN2 AIX sing 44 n n N2 HN2A AIX sing 45 n n O1 HO1 AIX sing 46 n n # _atom_sites.entry_id 5HL9 _atom_sites.fract_transf_matrix[1][1] 0.016015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AIX A 1 901 1 AIX AIX . C 3 M0E A 1 902 901 M0E M0E . D 4 HOH A 1 1001 82 HOH HOH . D 4 HOH A 2 1002 80 HOH HOH . D 4 HOH A 3 1003 77 HOH HOH . D 4 HOH A 4 1004 101 HOH HOH . D 4 HOH A 5 1005 61 HOH HOH . D 4 HOH A 6 1006 129 HOH HOH . D 4 HOH A 7 1007 28 HOH HOH . D 4 HOH A 8 1008 69 HOH HOH . D 4 HOH A 9 1009 41 HOH HOH . D 4 HOH A 10 1010 32 HOH HOH . D 4 HOH A 11 1011 113 HOH HOH . D 4 HOH A 12 1012 56 HOH HOH . D 4 HOH A 13 1013 111 HOH HOH . D 4 HOH A 14 1014 25 HOH HOH . D 4 HOH A 15 1015 62 HOH HOH . D 4 HOH A 16 1016 47 HOH HOH . D 4 HOH A 17 1017 44 HOH HOH . D 4 HOH A 18 1018 68 HOH HOH . D 4 HOH A 19 1019 37 HOH HOH . D 4 HOH A 20 1020 6 HOH HOH . D 4 HOH A 21 1021 81 HOH HOH . D 4 HOH A 22 1022 50 HOH HOH . D 4 HOH A 23 1023 54 HOH HOH . D 4 HOH A 24 1024 66 HOH HOH . D 4 HOH A 25 1025 35 HOH HOH . D 4 HOH A 26 1026 84 HOH HOH . D 4 HOH A 27 1027 109 HOH HOH . D 4 HOH A 28 1028 43 HOH HOH . D 4 HOH A 29 1029 97 HOH HOH . D 4 HOH A 30 1030 59 HOH HOH . D 4 HOH A 31 1031 51 HOH HOH . D 4 HOH A 32 1032 87 HOH HOH . D 4 HOH A 33 1033 83 HOH HOH . D 4 HOH A 34 1034 48 HOH HOH . D 4 HOH A 35 1035 42 HOH HOH . D 4 HOH A 36 1036 112 HOH HOH . D 4 HOH A 37 1037 88 HOH HOH . D 4 HOH A 38 1038 105 HOH HOH . D 4 HOH A 39 1039 94 HOH HOH . D 4 HOH A 40 1040 49 HOH HOH . D 4 HOH A 41 1041 145 HOH HOH . D 4 HOH A 42 1042 85 HOH HOH . D 4 HOH A 43 1043 16 HOH HOH . D 4 HOH A 44 1044 100 HOH HOH . D 4 HOH A 45 1045 114 HOH HOH . D 4 HOH A 46 1046 45 HOH HOH . D 4 HOH A 47 1047 131 HOH HOH . D 4 HOH A 48 1048 30 HOH HOH . D 4 HOH A 49 1049 106 HOH HOH . D 4 HOH A 50 1050 148 HOH HOH . D 4 HOH A 51 1051 33 HOH HOH . D 4 HOH A 52 1052 116 HOH HOH . D 4 HOH A 53 1053 127 HOH HOH . D 4 HOH A 54 1054 140 HOH HOH . D 4 HOH A 55 1055 141 HOH HOH . D 4 HOH A 56 1056 143 HOH HOH . D 4 HOH A 57 1057 120 HOH HOH . D 4 HOH A 58 1058 79 HOH HOH . D 4 HOH A 59 1059 11 HOH HOH . D 4 HOH A 60 1060 95 HOH HOH . D 4 HOH A 61 1061 123 HOH HOH . D 4 HOH A 62 1062 124 HOH HOH . D 4 HOH A 63 1063 14 HOH HOH . D 4 HOH A 64 1064 138 HOH HOH . D 4 HOH A 65 1065 36 HOH HOH . D 4 HOH A 66 1066 144 HOH HOH . D 4 HOH A 67 1067 15 HOH HOH . D 4 HOH A 68 1068 142 HOH HOH . D 4 HOH A 69 1069 12 HOH HOH . D 4 HOH A 70 1070 130 HOH HOH . D 4 HOH A 71 1071 13 HOH HOH . D 4 HOH A 72 1072 78 HOH HOH . D 4 HOH A 73 1073 10 HOH HOH . D 4 HOH A 74 1074 134 HOH HOH . D 4 HOH A 75 1075 53 HOH HOH . D 4 HOH A 76 1076 75 HOH HOH . D 4 HOH A 77 1077 149 HOH HOH . D 4 HOH A 78 1078 147 HOH HOH . D 4 HOH A 79 1079 107 HOH HOH . D 4 HOH A 80 1080 17 HOH HOH . D 4 HOH A 81 1081 29 HOH HOH . D 4 HOH A 82 1082 89 HOH HOH . D 4 HOH A 83 1083 7 HOH HOH . D 4 HOH A 84 1084 20 HOH HOH . D 4 HOH A 85 1085 125 HOH HOH . D 4 HOH A 86 1086 146 HOH HOH . D 4 HOH A 87 1087 137 HOH HOH . D 4 HOH A 88 1088 128 HOH HOH . D 4 HOH A 89 1089 91 HOH HOH . D 4 HOH A 90 1090 38 HOH HOH . D 4 HOH A 91 1091 70 HOH HOH . D 4 HOH A 92 1092 5 HOH HOH . D 4 HOH A 93 1093 46 HOH HOH . D 4 HOH A 94 1094 119 HOH HOH . D 4 HOH A 95 1095 99 HOH HOH . D 4 HOH A 96 1096 8 HOH HOH . D 4 HOH A 97 1097 115 HOH HOH . D 4 HOH A 98 1098 110 HOH HOH . D 4 HOH A 99 1099 136 HOH HOH . D 4 HOH A 100 1100 135 HOH HOH . D 4 HOH A 101 1101 139 HOH HOH . D 4 HOH A 102 1102 67 HOH HOH . D 4 HOH A 103 1103 121 HOH HOH . D 4 HOH A 104 1104 133 HOH HOH . D 4 HOH A 105 1105 118 HOH HOH . D 4 HOH A 106 1106 117 HOH HOH . D 4 HOH A 107 1107 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 AIX . . . B 2 10.624 16.783 -60.626 1 20 ? C8 AIX 901 A 1 HETATM 2 C C5 AIX . . . B 2 9.173 18.322 -59.612 1 20 ? C5 AIX 901 A 1 HETATM 3 C C6 AIX . . . B 2 6.107 16.41 -62.815 1 20 ? C6 AIX 901 A 1 HETATM 4 N N1 AIX . . . B 2 6.677 19.482 -61.079 1 20 ? N1 AIX 901 A 1 HETATM 5 C C2 AIX . . . B 2 3.651 16.169 -62.254 1 20 ? C2 AIX 901 A 1 HETATM 6 N N3 AIX . . . B 2 4.688 18.023 -63.283 1 20 ? N3 AIX 901 A 1 HETATM 7 C C4 AIX . . . B 2 8.572 19.631 -59.629 1 20 ? C4 AIX 901 A 1 HETATM 8 C C1 AIX . . . B 2 5.831 15.563 -64.015 1 20 ? C1 AIX 901 A 1 HETATM 9 C C3 AIX . . . B 2 7.906 19.881 -60.909 1 20 ? C3 AIX 901 A 1 HETATM 10 C C7 AIX . . . B 2 10.045 18.014 -60.604 1 20 ? C7 AIX 901 A 1 HETATM 11 C C9 AIX . . . B 2 10.334 15.879 -59.646 1 20 ? C9 AIX 901 A 1 HETATM 12 C C10 AIX . . . B 2 9.462 16.208 -58.644 1 20 ? C10 AIX 901 A 1 HETATM 13 C C11 AIX . . . B 2 8.877 17.437 -58.628 1 20 ? C11 AIX 901 A 1 HETATM 14 C C12 AIX . . . B 2 4.831 17.021 -62.315 1 20 ? C12 AIX 901 A 1 HETATM 15 C C13 AIX . . . B 2 5.823 18.89 -63.338 1 20 ? C13 AIX 901 A 1 HETATM 16 C C14 AIX . . . B 2 5.881 19.892 -62.189 1 20 ? C14 AIX 901 A 1 HETATM 17 C C15 AIX . . . B 2 4.513 20.211 -61.682 1 20 ? C15 AIX 901 A 1 HETATM 18 C C16 AIX . . . B 2 6.83 15.597 -61.78 1 20 ? C16 AIX 901 A 1 HETATM 19 N N2 AIX . . . B 2 9.638 20.566 -59.621 1 20 ? N2 AIX 901 A 1 HETATM 20 O O1 AIX . . . B 2 3.403 15.598 -61.201 1 20 ? O1 AIX 901 A 1 HETATM 21 O O2 AIX . . . B 2 2.979 16.115 -63.253 1 20 ? O2 AIX 901 A 1 HETATM 22 O O3 AIX . . . B 2 8.525 20.491 -61.708 1 20 ? O3 AIX 901 A 1 HETATM 23 O O4 AIX . . . B 2 4.025 19.874 -60.615 1 20 ? O4 AIX 901 A 1 HETATM 24 S S1 AIX . . . B 2 7.115 17.74 -63.285 1 20 ? S1 AIX 901 A 1 HETATM 25 H H8 AIX . . . B 2 11.316 16.527 -61.414 1 20 ? H8 AIX 901 A 1 HETATM 26 H HN1 AIX . . . B 2 6.228 18.953 -60.353 1 20 ? HN1 AIX 901 A 1 HETATM 27 H HN3 AIX . . . B 2 3.881 18.118 -63.877 1 20 ? HN3 AIX 901 A 1 HETATM 28 H H4 AIX . . . B 2 7.887 19.776 -58.788 1 20 ? H4 AIX 901 A 1 HETATM 29 H H1 AIX . . . B 2 4.908 15.844 -64.445 1 20 ? H1 AIX 901 A 1 HETATM 30 H H1A AIX . . . B 2 5.798 14.548 -63.721 1 20 ? H1A AIX 901 A 1 HETATM 31 H H1B AIX . . . B 2 6.608 15.708 -64.715 1 20 ? H1B AIX 901 A 1 HETATM 32 H H7 AIX . . . B 2 10.259 18.74 -61.376 1 20 ? H7 AIX 901 A 1 HETATM 33 H H9 AIX . . . B 2 10.799 14.903 -59.657 1 20 ? H9 AIX 901 A 1 HETATM 34 H H10 AIX . . . B 2 9.231 15.493 -57.869 1 20 ? H10 AIX 901 A 1 HETATM 35 H H11 AIX . . . B 2 8.186 17.703 -57.844 1 20 ? H11 AIX 901 A 1 HETATM 36 H H12 AIX . . . B 2 5.009 17.484 -61.34 1 20 ? H12 AIX 901 A 1 HETATM 37 H H13 AIX . . . B 2 5.838 19.427 -64.292 1 20 ? H13 AIX 901 A 1 HETATM 38 H H14 AIX . . . B 2 6.314 20.819 -62.574 1 20 ? H14 AIX 901 A 1 HETATM 39 H H16 AIX . . . B 2 6.351 14.661 -61.67 1 20 ? H16 AIX 901 A 1 HETATM 40 H H16A AIX . . . B 2 6.822 16.117 -60.862 1 20 ? H16A AIX 901 A 1 HETATM 41 H H16B AIX . . . B 2 7.827 15.451 -62.094 1 20 ? H16B AIX 901 A 1 HETATM 42 H HN2 AIX . . . B 2 10.349 20.512 -60.332 1 20 ? HN2 AIX 901 A 1 HETATM 43 H HN2A AIX . . . B 2 9.681 21.279 -58.911 1 20 ? HN2A AIX 901 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #