data_5HLM # _model_server_result.job_id CPKzBqUZp8699_hHgwMkwQ _model_server_result.datetime_utc '2024-12-22 06:17:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hlm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5HLM # _exptl.entry_id 5HLM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1,2,3,4,5-eta)-cyclopentadienyl]{(1,2,3,4,5-eta)-1-[1-hydroxy-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentyl]cyclopentadienyl}iron' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.17 _cell.angle_gamma 90 _cell.entry_id 5HLM _cell.length_a 43.2 _cell.length_b 74.91 _cell.length_c 76.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HLM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.231 ? covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 J C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 L C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? # _chem_comp.formula 'C20 H26 Fe N2 O2 S' _chem_comp.formula_weight 414.343 _chem_comp.id B9F _chem_comp.mon_nstd_flag . _chem_comp.name '[(1,2,3,4,5-eta)-cyclopentadienyl]{(1,2,3,4,5-eta)-1-[1-hydroxy-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentyl]cyclopentadienyl}iron' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C11 B9F sing 70 n n C11 C17 B9F sing 71 n n C11 C10 B9F sing 72 n n C17 C16 B9F sing 73 n n C17 C18 B9F sing 74 n n C17 FE1 B9F sing 75 n n C16 C15 B9F sing 76 n n C16 FE1 B9F sing 77 n n C15 C14 B9F sing 78 n n C15 FE1 B9F sing 79 n n C14 C18 B9F sing 80 n n C14 FE1 B9F sing 81 n n C18 FE1 B9F sing 82 n n C10 C9 B9F sing 83 n n C9 C8 B9F sing 84 n n C8 C7 B9F sing 85 n n C7 C2 B9F sing 86 n n C2 C4 B9F sing 87 n n C2 S1 B9F sing 88 n n C4 N2 B9F sing 89 n n C4 C5 B9F sing 90 n n N2 C3 B9F sing 91 n n C3 O3 B9F doub 92 n n C3 N1 B9F sing 93 n n S1 C6 B9F sing 94 n n C6 C5 B9F sing 95 n n C5 N1 B9F sing 96 n n C19 C20 B9F sing 97 n n C19 C23 B9F sing 98 n n C19 FE1 B9F sing 99 n n C20 C21 B9F sing 100 n n C20 FE1 B9F sing 101 n n C21 C22 B9F sing 102 n n C21 FE1 B9F sing 103 n n C22 C23 B9F sing 104 n n C22 FE1 B9F sing 105 n n C23 FE1 B9F sing 106 n n O12 H1 B9F sing 107 n n C11 H2 B9F sing 108 n n C16 H3 B9F sing 109 n n C15 H4 B9F sing 110 n n C14 H5 B9F sing 111 n n C18 H6 B9F sing 112 n n C10 H7 B9F sing 113 n n C10 H8 B9F sing 114 n n C9 H9 B9F sing 115 n n C9 H10 B9F sing 116 n n C8 H11 B9F sing 117 n n C8 H12 B9F sing 118 n n C7 H13 B9F sing 119 n n C7 H14 B9F sing 120 n n C2 H15 B9F sing 121 n n C4 H16 B9F sing 122 n n N2 H17 B9F sing 123 n n C6 H18 B9F sing 124 n n C6 H19 B9F sing 125 n n C5 H20 B9F sing 126 n n N1 H21 B9F sing 127 n n C19 H22 B9F sing 128 n n C20 H23 B9F sing 129 n n C21 H24 B9F sing 130 n n C22 H25 B9F sing 131 n n C23 H26 B9F sing 132 n n # _atom_sites.entry_id 5HLM _atom_sites.fract_transf_matrix[1][1] 0.023148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00671 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 B9F A 1 201 303 B9F B9F . F 3 NAG A 1 202 5 NAG NAG . G 2 B9F B 1 201 300 B9F B9F . H 3 NAG B 1 202 3 NAG NAG . I 2 B9F C 1 301 301 B9F B9F . J 3 NAG C 1 302 2 NAG NAG . K 2 B9F D 1 201 302 B9F B9F . L 3 NAG D 1 202 4 NAG NAG . M 4 HOH A 1 301 25 HOH HOH . M 4 HOH A 2 302 7 HOH HOH . M 4 HOH A 3 303 17 HOH HOH . M 4 HOH A 4 304 27 HOH HOH . M 4 HOH A 5 305 32 HOH HOH . M 4 HOH A 6 306 8 HOH HOH . M 4 HOH A 7 307 21 HOH HOH . M 4 HOH A 8 308 13 HOH HOH . M 4 HOH A 9 309 9 HOH HOH . M 4 HOH A 10 310 30 HOH HOH . M 4 HOH A 11 311 29 HOH HOH . M 4 HOH A 12 312 11 HOH HOH . M 4 HOH A 13 313 14 HOH HOH . M 4 HOH A 14 314 1 HOH HOH . N 4 HOH B 1 301 26 HOH HOH . N 4 HOH B 2 302 34 HOH HOH . N 4 HOH B 3 303 22 HOH HOH . N 4 HOH B 4 304 39 HOH HOH . N 4 HOH B 5 305 12 HOH HOH . O 4 HOH C 1 401 23 HOH HOH . O 4 HOH C 2 402 16 HOH HOH . O 4 HOH C 3 403 31 HOH HOH . O 4 HOH C 4 404 38 HOH HOH . O 4 HOH C 5 405 2 HOH HOH . O 4 HOH C 6 406 5 HOH HOH . O 4 HOH C 7 407 18 HOH HOH . O 4 HOH C 8 408 6 HOH HOH . O 4 HOH C 9 409 15 HOH HOH . O 4 HOH C 10 410 10 HOH HOH . P 4 HOH D 1 301 24 HOH HOH . P 4 HOH D 2 302 4 HOH HOH . P 4 HOH D 3 303 20 HOH HOH . P 4 HOH D 4 304 19 HOH HOH . P 4 HOH D 5 305 28 HOH HOH . P 4 HOH D 6 306 40 HOH HOH . P 4 HOH D 7 307 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 B9F . . . E 2 12.379 42.499 32.47 1 69.18 ? O12 B9F 201 A 1 HETATM 2 C C11 B9F . . . E 2 11.636 41.311 32.535 1 60.32 ? C11 B9F 201 A 1 HETATM 3 C C17 B9F . . . E 2 12.221 40.299 31.598 1 69.36 ? C17 B9F 201 A 1 HETATM 4 C C16 B9F . . . E 2 11.508 39.463 30.676 1 74.34 ? C16 B9F 201 A 1 HETATM 5 C C15 B9F . . . E 2 12.453 38.718 29.928 1 70.11 ? C15 B9F 201 A 1 HETATM 6 C C14 B9F . . . E 2 13.736 39.07 30.377 1 72.41 ? C14 B9F 201 A 1 HETATM 7 C C18 B9F . . . E 2 13.606 40.039 31.394 1 72.8 ? C18 B9F 201 A 1 HETATM 8 C C10 B9F . . . E 2 10.201 41.741 32.216 1 56.89 ? C10 B9F 201 A 1 HETATM 9 C C9 B9F . . . E 2 9.282 40.998 33.192 1 56.04 ? C9 B9F 201 A 1 HETATM 10 C C8 B9F . . . E 2 7.858 40.89 32.722 1 52.19 ? C8 B9F 201 A 1 HETATM 11 C C7 B9F . . . E 2 7.197 39.646 33.29 1 54.66 ? C7 B9F 201 A 1 HETATM 12 C C2 B9F . . . E 2 6.214 39.001 32.335 1 51.41 ? C2 B9F 201 A 1 HETATM 13 C C4 B9F . . . E 2 5.675 37.639 32.733 1 51.88 ? C4 B9F 201 A 1 HETATM 14 N N2 B9F . . . E 2 5.235 37.574 34.095 1 51.33 ? N2 B9F 201 A 1 HETATM 15 C C3 B9F . . . E 2 3.939 37.223 34.235 1 53.79 ? C3 B9F 201 A 1 HETATM 16 O O3 B9F . . . E 2 3.349 37.075 35.298 1 57.19 ? O3 B9F 201 A 1 HETATM 17 S S1 B9F . . . E 2 4.717 40.009 32.122 1 51.45 ? S1 B9F 201 A 1 HETATM 18 C C6 B9F . . . E 2 3.971 38.647 31.197 1 48.26 ? C6 B9F 201 A 1 HETATM 19 C C5 B9F . . . E 2 4.351 37.381 31.951 1 51.4 ? C5 B9F 201 A 1 HETATM 20 N N1 B9F . . . E 2 3.415 37.047 33.005 1 53.56 ? N1 B9F 201 A 1 HETATM 21 C C19 B9F . . . E 2 11.575 42.276 28.901 1 63.26 ? C19 B9F 201 A 1 HETATM 22 C C20 B9F . . . E 2 12.823 42.795 29.334 1 68.24 ? C20 B9F 201 A 1 HETATM 23 C C21 B9F . . . E 2 13.873 42.141 28.64 1 67.52 ? C21 B9F 201 A 1 HETATM 24 C C22 B9F . . . E 2 13.263 41.218 27.75 1 69.33 ? C22 B9F 201 A 1 HETATM 25 C C23 B9F . . . E 2 11.85 41.293 27.919 1 65.55 ? C23 B9F 201 A 1 HETATM 26 FE FE1 B9F . . . E 2 12.728 40.763 29.671 1 72.3 ? FE1 B9F 201 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 665 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #