data_5HLM
#
_model_server_result.job_id            YKvBGBT17ZUPhgFPjlxi8w 
_model_server_result.datetime_utc      '2024-12-22 06:31:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
#
_entry.id    5HLM 
#
_exptl.entry_id    5HLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              414.343 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1,2,3,4,5-eta)-cyclopentadienyl]{(1,2,3,4,5-eta)-1-[1-hydroxy-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentyl]cyclopentadienyl}iron' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.17 
_cell.angle_gamma         90 
_cell.entry_id            5HLM 
_cell.length_a            43.2 
_cell.length_b            74.91 
_cell.length_c            76.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.231 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 J C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 L C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
#
_chem_comp.formula           'C20 H26 Fe N2 O2 S' 
_chem_comp.formula_weight    414.343 
_chem_comp.id                B9F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1,2,3,4,5-eta)-cyclopentadienyl]{(1,2,3,4,5-eta)-1-[1-hydroxy-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentyl]cyclopentadienyl}iron' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C11 B9F sing 70 n n 
C11 C17 B9F sing 71 n n 
C11 C10 B9F sing 72 n n 
C17 C16 B9F sing 73 n n 
C17 C18 B9F sing 74 n n 
C17 FE1 B9F sing 75 n n 
C16 C15 B9F sing 76 n n 
C16 FE1 B9F sing 77 n n 
C15 C14 B9F sing 78 n n 
C15 FE1 B9F sing 79 n n 
C14 C18 B9F sing 80 n n 
C14 FE1 B9F sing 81 n n 
C18 FE1 B9F sing 82 n n 
C10 C9 B9F sing 83 n n 
C9 C8 B9F sing 84 n n 
C8 C7 B9F sing 85 n n 
C7 C2 B9F sing 86 n n 
C2 C4 B9F sing 87 n n 
C2 S1 B9F sing 88 n n 
C4 N2 B9F sing 89 n n 
C4 C5 B9F sing 90 n n 
N2 C3 B9F sing 91 n n 
C3 O3 B9F doub 92 n n 
C3 N1 B9F sing 93 n n 
S1 C6 B9F sing 94 n n 
C6 C5 B9F sing 95 n n 
C5 N1 B9F sing 96 n n 
C19 C20 B9F sing 97 n n 
C19 C23 B9F sing 98 n n 
C19 FE1 B9F sing 99 n n 
C20 C21 B9F sing 100 n n 
C20 FE1 B9F sing 101 n n 
C21 C22 B9F sing 102 n n 
C21 FE1 B9F sing 103 n n 
C22 C23 B9F sing 104 n n 
C22 FE1 B9F sing 105 n n 
C23 FE1 B9F sing 106 n n 
O12 H1 B9F sing 107 n n 
C11 H2 B9F sing 108 n n 
C16 H3 B9F sing 109 n n 
C15 H4 B9F sing 110 n n 
C14 H5 B9F sing 111 n n 
C18 H6 B9F sing 112 n n 
C10 H7 B9F sing 113 n n 
C10 H8 B9F sing 114 n n 
C9 H9 B9F sing 115 n n 
C9 H10 B9F sing 116 n n 
C8 H11 B9F sing 117 n n 
C8 H12 B9F sing 118 n n 
C7 H13 B9F sing 119 n n 
C7 H14 B9F sing 120 n n 
C2 H15 B9F sing 121 n n 
C4 H16 B9F sing 122 n n 
N2 H17 B9F sing 123 n n 
C6 H18 B9F sing 124 n n 
C6 H19 B9F sing 125 n n 
C5 H20 B9F sing 126 n n 
N1 H21 B9F sing 127 n n 
C19 H22 B9F sing 128 n n 
C20 H23 B9F sing 129 n n 
C21 H24 B9F sing 130 n n 
C22 H25 B9F sing 131 n n 
C23 H26 B9F sing 132 n n 
#
_atom_sites.entry_id                     5HLM 
_atom_sites.fract_transf_matrix[1][1]    0.023148 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00671 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 B9F A 1 201 303 B9F B9F . 
F 3 NAG A 1 202 5 NAG NAG . 
G 2 B9F B 1 201 300 B9F B9F . 
H 3 NAG B 1 202 3 NAG NAG . 
I 2 B9F C 1 301 301 B9F B9F . 
J 3 NAG C 1 302 2 NAG NAG . 
K 2 B9F D 1 201 302 B9F B9F . 
L 3 NAG D 1 202 4 NAG NAG . 
M 4 HOH A 1 301 25 HOH HOH . 
M 4 HOH A 2 302 7 HOH HOH . 
M 4 HOH A 3 303 17 HOH HOH . 
M 4 HOH A 4 304 27 HOH HOH . 
M 4 HOH A 5 305 32 HOH HOH . 
M 4 HOH A 6 306 8 HOH HOH . 
M 4 HOH A 7 307 21 HOH HOH . 
M 4 HOH A 8 308 13 HOH HOH . 
M 4 HOH A 9 309 9 HOH HOH . 
M 4 HOH A 10 310 30 HOH HOH . 
M 4 HOH A 11 311 29 HOH HOH . 
M 4 HOH A 12 312 11 HOH HOH . 
M 4 HOH A 13 313 14 HOH HOH . 
M 4 HOH A 14 314 1 HOH HOH . 
N 4 HOH B 1 301 26 HOH HOH . 
N 4 HOH B 2 302 34 HOH HOH . 
N 4 HOH B 3 303 22 HOH HOH . 
N 4 HOH B 4 304 39 HOH HOH . 
N 4 HOH B 5 305 12 HOH HOH . 
O 4 HOH C 1 401 23 HOH HOH . 
O 4 HOH C 2 402 16 HOH HOH . 
O 4 HOH C 3 403 31 HOH HOH . 
O 4 HOH C 4 404 38 HOH HOH . 
O 4 HOH C 5 405 2 HOH HOH . 
O 4 HOH C 6 406 5 HOH HOH . 
O 4 HOH C 7 407 18 HOH HOH . 
O 4 HOH C 8 408 6 HOH HOH . 
O 4 HOH C 9 409 15 HOH HOH . 
O 4 HOH C 10 410 10 HOH HOH . 
P 4 HOH D 1 301 24 HOH HOH . 
P 4 HOH D 2 302 4 HOH HOH . 
P 4 HOH D 3 303 20 HOH HOH . 
P 4 HOH D 4 304 19 HOH HOH . 
P 4 HOH D 5 305 28 HOH HOH . 
P 4 HOH D 6 306 40 HOH HOH . 
P 4 HOH D 7 307 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 B9F . . . G 2 -14.897 44.452 18.291 1 60.53 ? O12 B9F 201 B 1 
HETATM 2 C C11 B9F . . . G 2 -15.542 45.575 17.678 1 59.39 ? C11 B9F 201 B 1 
HETATM 3 C C17 B9F . . . G 2 -15.931 45.25 16.265 1 64.55 ? C17 B9F 201 B 1 
HETATM 4 C C16 B9F . . . G 2 -17.225 44.835 15.817 1 68.49 ? C16 B9F 201 B 1 
HETATM 5 C C15 B9F . . . G 2 -17.155 44.585 14.422 1 75.59 ? C15 B9F 201 B 1 
HETATM 6 C C14 B9F . . . G 2 -15.848 44.853 13.999 1 76.66 ? C14 B9F 201 B 1 
HETATM 7 C C18 B9F . . . G 2 -15.089 45.252 15.114 1 70.18 ? C18 B9F 201 B 1 
HETATM 8 C C10 B9F . . . G 2 -14.696 46.831 17.867 1 51.94 ? C10 B9F 201 B 1 
HETATM 9 C C9 B9F . . . G 2 -13.43 46.865 17.047 1 57.28 ? C9 B9F 201 B 1 
HETATM 10 C C8 B9F . . . G 2 -12.406 47.843 17.554 1 60.01 ? C8 B9F 201 B 1 
HETATM 11 C C7 B9F . . . G 2 -11.51 48.352 16.422 1 60.07 ? C7 B9F 201 B 1 
HETATM 12 C C2 B9F . . . G 2 -10.219 47.577 16.266 1 53 ? C2 B9F 201 B 1 
HETATM 13 C C4 B9F . . . G 2 -9.432 47.978 15.021 1 49.83 ? C4 B9F 201 B 1 
HETATM 14 N N2 B9F . . . G 2 -9.459 49.404 14.77 1 45.06 ? N2 B9F 201 B 1 
HETATM 15 C C3 B9F . . . G 2 -8.263 50 14.954 1 42.09 ? C3 B9F 201 B 1 
HETATM 16 O O3 B9F . . . G 2 -8.049 51.187 14.91 1 45.55 ? O3 B9F 201 B 1 
HETATM 17 S S1 B9F . . . G 2 -9.06 47.903 17.628 1 50.94 ? S1 B9F 201 B 1 
HETATM 18 C C6 B9F . . . G 2 -7.768 47.115 16.642 1 53.98 ? C6 B9F 201 B 1 
HETATM 19 C C5 B9F . . . G 2 -7.912 47.731 15.287 1 49.7 ? C5 B9F 201 B 1 
HETATM 20 N N1 B9F . . . G 2 -7.342 49.057 15.217 1 45.59 ? N1 B9F 201 B 1 
HETATM 21 C C19 B9F . . . G 2 -14.49 42.057 16.323 1 64.65 ? C19 B9F 201 B 1 
HETATM 22 C C20 B9F . . . G 2 -14.619 41.782 14.935 1 75.81 ? C20 B9F 201 B 1 
HETATM 23 C C21 B9F . . . G 2 -15.976 41.464 14.652 1 72.07 ? C21 B9F 201 B 1 
HETATM 24 C C22 B9F . . . G 2 -16.691 41.528 15.874 1 65.51 ? C22 B9F 201 B 1 
HETATM 25 C C23 B9F . . . G 2 -15.773 41.882 16.898 1 67.9 ? C23 B9F 201 B 1 
HETATM 26 FE FE1 B9F . . . G 2 -15.833 43.352 15.443 1 70.76 ? FE1 B9F 201 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           26 
#