data_5HLM
#
_model_server_result.job_id            DaFaUD_uE_boyea0bdRihg 
_model_server_result.datetime_utc      '2024-12-22 06:25:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":202}' 
#
_entry.id    5HLM 
#
_exptl.entry_id    5HLM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.17 
_cell.angle_gamma         90 
_cell.entry_id            5HLM 
_cell.length_a            43.2 
_cell.length_b            74.91 
_cell.length_c            76.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 C SG CYS 4 C CYS 4 1_555 C SG CYS 83 C CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf4 D SG CYS 4 D CYS 4 1_555 D SG CYS 83 D CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.231 ? 
covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 H C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale3 C ND2 ASN 17 C ASN 17 1_555 J C1 NAG . C NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale4 D ND2 ASN 17 D ASN 17 1_555 L C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 300 n n 
C1 O1 NAG sing 301 n n 
C1 O5 NAG sing 302 n n 
C1 H1 NAG sing 303 n n 
C2 C3 NAG sing 304 n n 
C2 N2 NAG sing 305 n n 
C2 H2 NAG sing 306 n n 
C3 C4 NAG sing 307 n n 
C3 O3 NAG sing 308 n n 
C3 H3 NAG sing 309 n n 
C4 C5 NAG sing 310 n n 
C4 O4 NAG sing 311 n n 
C4 H4 NAG sing 312 n n 
C5 C6 NAG sing 313 n n 
C5 O5 NAG sing 314 n n 
C5 H5 NAG sing 315 n n 
C6 O6 NAG sing 316 n n 
C6 H61 NAG sing 317 n n 
C6 H62 NAG sing 318 n n 
C7 C8 NAG sing 319 n n 
C7 N2 NAG sing 320 n n 
C7 O7 NAG doub 321 n n 
C8 H81 NAG sing 322 n n 
C8 H82 NAG sing 323 n n 
C8 H83 NAG sing 324 n n 
N2 HN2 NAG sing 325 n n 
O1 HO1 NAG sing 326 n n 
O3 HO3 NAG sing 327 n n 
O4 HO4 NAG sing 328 n n 
O6 HO6 NAG sing 329 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5HLM 
_atom_sites.fract_transf_matrix[1][1]    0.023148 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00671 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 B9F A 1 201 303 B9F B9F . 
F 3 NAG A 1 202 5 NAG NAG . 
G 2 B9F B 1 201 300 B9F B9F . 
H 3 NAG B 1 202 3 NAG NAG . 
I 2 B9F C 1 301 301 B9F B9F . 
J 3 NAG C 1 302 2 NAG NAG . 
K 2 B9F D 1 201 302 B9F B9F . 
L 3 NAG D 1 202 4 NAG NAG . 
M 4 HOH A 1 301 25 HOH HOH . 
M 4 HOH A 2 302 7 HOH HOH . 
M 4 HOH A 3 303 17 HOH HOH . 
M 4 HOH A 4 304 27 HOH HOH . 
M 4 HOH A 5 305 32 HOH HOH . 
M 4 HOH A 6 306 8 HOH HOH . 
M 4 HOH A 7 307 21 HOH HOH . 
M 4 HOH A 8 308 13 HOH HOH . 
M 4 HOH A 9 309 9 HOH HOH . 
M 4 HOH A 10 310 30 HOH HOH . 
M 4 HOH A 11 311 29 HOH HOH . 
M 4 HOH A 12 312 11 HOH HOH . 
M 4 HOH A 13 313 14 HOH HOH . 
M 4 HOH A 14 314 1 HOH HOH . 
N 4 HOH B 1 301 26 HOH HOH . 
N 4 HOH B 2 302 34 HOH HOH . 
N 4 HOH B 3 303 22 HOH HOH . 
N 4 HOH B 4 304 39 HOH HOH . 
N 4 HOH B 5 305 12 HOH HOH . 
O 4 HOH C 1 401 23 HOH HOH . 
O 4 HOH C 2 402 16 HOH HOH . 
O 4 HOH C 3 403 31 HOH HOH . 
O 4 HOH C 4 404 38 HOH HOH . 
O 4 HOH C 5 405 2 HOH HOH . 
O 4 HOH C 6 406 5 HOH HOH . 
O 4 HOH C 7 407 18 HOH HOH . 
O 4 HOH C 8 408 6 HOH HOH . 
O 4 HOH C 9 409 15 HOH HOH . 
O 4 HOH C 10 410 10 HOH HOH . 
P 4 HOH D 1 301 24 HOH HOH . 
P 4 HOH D 2 302 4 HOH HOH . 
P 4 HOH D 3 303 20 HOH HOH . 
P 4 HOH D 4 304 19 HOH HOH . 
P 4 HOH D 5 305 28 HOH HOH . 
P 4 HOH D 6 306 40 HOH HOH . 
P 4 HOH D 7 307 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 3 -7.767 11.109 19.062 1 71.54 ? C1 NAG 202 D 1 
HETATM 2 C C2 NAG . . . L 3 -9.246 11.276 18.744 1 77.23 ? C2 NAG 202 D 1 
HETATM 3 C C3 NAG . . . L 3 -10.082 10.416 19.709 1 80.55 ? C3 NAG 202 D 1 
HETATM 4 C C4 NAG . . . L 3 -9.614 8.965 19.689 1 83.68 ? C4 NAG 202 D 1 
HETATM 5 C C5 NAG . . . L 3 -8.118 8.9 20.002 1 83.14 ? C5 NAG 202 D 1 
HETATM 6 C C6 NAG . . . L 3 -7.581 7.461 20.047 1 82.65 ? C6 NAG 202 D 1 
HETATM 7 C C7 NAG . . . L 3 -10.589 13.178 17.966 1 72.75 ? C7 NAG 202 D 1 
HETATM 8 C C8 NAG . . . L 3 -11.175 14.529 18.345 1 66.91 ? C8 NAG 202 D 1 
HETATM 9 N N2 NAG . . . L 3 -9.709 12.648 18.835 1 73.29 ? N2 NAG 202 D 1 
HETATM 10 O O3 NAG . . . L 3 -11.488 10.49 19.385 1 76.75 ? O3 NAG 202 D 1 
HETATM 11 O O4 NAG . . . L 3 -10.39 8.206 20.619 1 93.44 ? O4 NAG 202 D 1 
HETATM 12 O O5 NAG . . . L 3 -7.381 9.696 19.046 1 88.55 ? O5 NAG 202 D 1 
HETATM 13 O O6 NAG . . . L 3 -6.342 7.279 19.326 1 74.35 ? O6 NAG 202 D 1 
HETATM 14 O O7 NAG . . . L 3 -10.926 12.58 16.947 1 67.67 ? O7 NAG 202 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#