data_5HM7
#
_model_server_result.job_id            qdRua_AXWL1J4dnHnkyZWw 
_model_server_result.datetime_utc      '2024-10-20 20:51:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hm7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    5HM7 
#
_exptl.entry_id    5HM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.57 
_cell.angle_gamma         90 
_cell.entry_id            5HM7 
_cell.length_a            37.43 
_cell.length_b            145.84 
_cell.length_c            44.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,L 1 1 
B,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 118 A CYS 357 1_555 E S2 BME . A BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
covale ? covale2 A SG CYS 242 A CYS 481 1_555 D S2 BME . A BME 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
covale ? covale3 B SG CYS 118 B CYS 357 1_555 J S2 BME . B BME 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale4 B SG CYS 242 B CYS 481 1_555 I S2 BME . B BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc1 A O TRP 111 A TRP 350 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? 
metalc ? metalc2 C O3 GOL . A GOL 501 1_555 F MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc3 B O TRP 111 B TRP 350 1_555 K MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc4 G O1 GOL . B GOL 501 1_555 K MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5HM7 
_atom_sites.fract_transf_matrix[1][1]    0.026717 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023115 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 501 501 GOL GOL . 
D 3 BME A 1 502 502 BME BME . 
E 3 BME A 1 503 503 BME BME . 
F 4 MG A 1 504 504 MG MG . 
G 2 GOL B 1 501 501 GOL GOL . 
H 2 GOL B 1 502 502 GOL GOL . 
I 3 BME B 1 503 503 BME BME . 
J 3 BME B 1 504 504 BME BME . 
K 4 MG B 1 505 505 MG MG . 
L 5 HOH A 1 601 601 HOH HOH . 
L 5 HOH A 2 602 602 HOH HOH . 
L 5 HOH A 3 603 603 HOH HOH . 
L 5 HOH A 4 604 604 HOH HOH . 
L 5 HOH A 5 605 605 HOH HOH . 
L 5 HOH A 6 606 606 HOH HOH . 
L 5 HOH A 7 607 607 HOH HOH . 
L 5 HOH A 8 608 608 HOH HOH . 
L 5 HOH A 9 609 609 HOH HOH . 
L 5 HOH A 10 610 610 HOH HOH . 
L 5 HOH A 11 611 611 HOH HOH . 
L 5 HOH A 12 612 612 HOH HOH . 
L 5 HOH A 13 613 613 HOH HOH . 
L 5 HOH A 14 614 614 HOH HOH . 
L 5 HOH A 15 615 615 HOH HOH . 
L 5 HOH A 16 616 616 HOH HOH . 
L 5 HOH A 17 617 617 HOH HOH . 
L 5 HOH A 18 618 618 HOH HOH . 
L 5 HOH A 19 619 619 HOH HOH . 
L 5 HOH A 20 620 620 HOH HOH . 
L 5 HOH A 21 621 621 HOH HOH . 
L 5 HOH A 22 622 622 HOH HOH . 
L 5 HOH A 23 623 623 HOH HOH . 
L 5 HOH A 24 624 624 HOH HOH . 
L 5 HOH A 25 625 625 HOH HOH . 
L 5 HOH A 26 626 626 HOH HOH . 
L 5 HOH A 27 627 627 HOH HOH . 
L 5 HOH A 28 628 628 HOH HOH . 
L 5 HOH A 29 629 629 HOH HOH . 
L 5 HOH A 30 630 630 HOH HOH . 
L 5 HOH A 31 631 631 HOH HOH . 
L 5 HOH A 32 632 632 HOH HOH . 
L 5 HOH A 33 633 633 HOH HOH . 
L 5 HOH A 34 634 634 HOH HOH . 
L 5 HOH A 35 635 635 HOH HOH . 
L 5 HOH A 36 636 636 HOH HOH . 
L 5 HOH A 37 637 637 HOH HOH . 
L 5 HOH A 38 638 638 HOH HOH . 
L 5 HOH A 39 639 639 HOH HOH . 
L 5 HOH A 40 640 640 HOH HOH . 
L 5 HOH A 41 641 641 HOH HOH . 
L 5 HOH A 42 642 642 HOH HOH . 
L 5 HOH A 43 643 643 HOH HOH . 
L 5 HOH A 44 644 644 HOH HOH . 
L 5 HOH A 45 645 645 HOH HOH . 
L 5 HOH A 46 646 646 HOH HOH . 
L 5 HOH A 47 647 647 HOH HOH . 
L 5 HOH A 48 648 648 HOH HOH . 
L 5 HOH A 49 649 649 HOH HOH . 
L 5 HOH A 50 650 650 HOH HOH . 
L 5 HOH A 51 651 651 HOH HOH . 
L 5 HOH A 52 652 652 HOH HOH . 
L 5 HOH A 53 653 653 HOH HOH . 
L 5 HOH A 54 654 654 HOH HOH . 
L 5 HOH A 55 655 655 HOH HOH . 
L 5 HOH A 56 656 656 HOH HOH . 
L 5 HOH A 57 657 657 HOH HOH . 
L 5 HOH A 58 658 658 HOH HOH . 
L 5 HOH A 59 659 659 HOH HOH . 
L 5 HOH A 60 660 660 HOH HOH . 
L 5 HOH A 61 661 661 HOH HOH . 
L 5 HOH A 62 662 662 HOH HOH . 
L 5 HOH A 63 663 663 HOH HOH . 
L 5 HOH A 64 664 664 HOH HOH . 
L 5 HOH A 65 665 665 HOH HOH . 
L 5 HOH A 66 666 666 HOH HOH . 
L 5 HOH A 67 667 667 HOH HOH . 
L 5 HOH A 68 668 668 HOH HOH . 
L 5 HOH A 69 669 669 HOH HOH . 
L 5 HOH A 70 670 670 HOH HOH . 
L 5 HOH A 71 671 671 HOH HOH . 
L 5 HOH A 72 672 672 HOH HOH . 
L 5 HOH A 73 673 673 HOH HOH . 
L 5 HOH A 74 674 674 HOH HOH . 
L 5 HOH A 75 675 675 HOH HOH . 
L 5 HOH A 76 676 676 HOH HOH . 
L 5 HOH A 77 677 677 HOH HOH . 
L 5 HOH A 78 678 678 HOH HOH . 
L 5 HOH A 79 679 679 HOH HOH . 
M 5 HOH B 1 601 601 HOH HOH . 
M 5 HOH B 2 602 602 HOH HOH . 
M 5 HOH B 3 603 603 HOH HOH . 
M 5 HOH B 4 604 604 HOH HOH . 
M 5 HOH B 5 605 605 HOH HOH . 
M 5 HOH B 6 606 606 HOH HOH . 
M 5 HOH B 7 607 607 HOH HOH . 
M 5 HOH B 8 608 608 HOH HOH . 
M 5 HOH B 9 609 609 HOH HOH . 
M 5 HOH B 10 610 610 HOH HOH . 
M 5 HOH B 11 611 611 HOH HOH . 
M 5 HOH B 12 612 612 HOH HOH . 
M 5 HOH B 13 613 613 HOH HOH . 
M 5 HOH B 14 614 614 HOH HOH . 
M 5 HOH B 15 615 615 HOH HOH . 
M 5 HOH B 16 616 616 HOH HOH . 
M 5 HOH B 17 617 617 HOH HOH . 
M 5 HOH B 18 618 618 HOH HOH . 
M 5 HOH B 19 619 619 HOH HOH . 
M 5 HOH B 20 620 620 HOH HOH . 
M 5 HOH B 21 621 621 HOH HOH . 
M 5 HOH B 22 622 622 HOH HOH . 
M 5 HOH B 23 623 623 HOH HOH . 
M 5 HOH B 24 624 624 HOH HOH . 
M 5 HOH B 25 625 625 HOH HOH . 
M 5 HOH B 26 626 626 HOH HOH . 
M 5 HOH B 27 627 627 HOH HOH . 
M 5 HOH B 28 628 628 HOH HOH . 
M 5 HOH B 29 629 629 HOH HOH . 
M 5 HOH B 30 630 630 HOH HOH . 
M 5 HOH B 31 631 631 HOH HOH . 
M 5 HOH B 32 632 632 HOH HOH . 
M 5 HOH B 33 633 633 HOH HOH . 
M 5 HOH B 34 634 634 HOH HOH . 
M 5 HOH B 35 635 635 HOH HOH . 
M 5 HOH B 36 636 636 HOH HOH . 
M 5 HOH B 37 637 637 HOH HOH . 
M 5 HOH B 38 638 638 HOH HOH . 
M 5 HOH B 39 639 639 HOH HOH . 
M 5 HOH B 40 640 640 HOH HOH . 
M 5 HOH B 41 641 641 HOH HOH . 
M 5 HOH B 42 642 642 HOH HOH . 
M 5 HOH B 43 643 643 HOH HOH . 
M 5 HOH B 44 644 644 HOH HOH . 
M 5 HOH B 45 645 645 HOH HOH . 
M 5 HOH B 46 646 646 HOH HOH . 
M 5 HOH B 47 647 647 HOH HOH . 
M 5 HOH B 48 648 648 HOH HOH . 
M 5 HOH B 49 649 649 HOH HOH . 
M 5 HOH B 50 650 650 HOH HOH . 
M 5 HOH B 51 651 651 HOH HOH . 
M 5 HOH B 52 652 652 HOH HOH . 
M 5 HOH B 53 653 653 HOH HOH . 
M 5 HOH B 54 654 654 HOH HOH . 
M 5 HOH B 55 655 655 HOH HOH . 
M 5 HOH B 56 656 656 HOH HOH . 
M 5 HOH B 57 657 657 HOH HOH . 
M 5 HOH B 58 658 658 HOH HOH . 
M 5 HOH B 59 659 659 HOH HOH . 
M 5 HOH B 60 660 660 HOH HOH . 
M 5 HOH B 61 661 661 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 2 21.422 39.322 35.893 1 28.25 ? C1 GOL 501 B 1 
HETATM 2 O O1 GOL . . . G 2 21.289 40.448 36.773 1 21.32 ? O1 GOL 501 B 1 
HETATM 3 C C2 GOL . . . G 2 22.318 38.288 36.573 1 25.97 ? C2 GOL 501 B 1 
HETATM 4 O O2 GOL . . . G 2 22.83 37.367 35.589 1 31.98 ? O2 GOL 501 B 1 
HETATM 5 C C3 GOL . . . G 2 21.48 37.559 37.618 1 29.41 ? C3 GOL 501 B 1 
HETATM 6 O O3 GOL . . . G 2 22.258 36.958 38.675 1 22.09 ? O3 GOL 501 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#