data_5HMC # _model_server_result.job_id fNUpPE85Dt7oeNQuLznq3g _model_server_result.datetime_utc '2024-10-10 10:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 5HMC # _exptl.entry_id 5HMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.207 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-methylnaphthalene-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HMC _cell.length_a 67.771 _cell.length_b 67.771 _cell.length_c 140.278 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 67.771 -67.771 0 4 'crystal symmetry operation' 15_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 67.771 -67.771 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 O2' _chem_comp.formula_weight 186.207 _chem_comp.id 5NE _chem_comp.mon_nstd_flag . _chem_comp.name '5-methylnaphthalene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C1A 5NE doub 1 n y C1B C1C 5NE sing 2 n y C1A C1F 5NE sing 3 n y C1O C1C 5NE sing 4 n n C1C C1D 5NE doub 5 n y C1F C1E 5NE doub 6 n y C1D C1E 5NE sing 7 n y C1D C1G 5NE sing 8 n y C1E C1J 5NE sing 9 n y C1G C1H 5NE doub 10 n y C1J C1L 5NE sing 11 n n C1J C1I 5NE doub 12 n y O1N C1L 5NE doub 13 n n C1L O1M 5NE sing 14 n n C1H C1I 5NE sing 15 n y O1M H1 5NE sing 16 n n C1F H2 5NE sing 17 n n C1A H3 5NE sing 18 n n C1I H4 5NE sing 19 n n C1H H5 5NE sing 20 n n C1G H6 5NE sing 21 n n C1O H7 5NE sing 22 n n C1O H8 5NE sing 23 n n C1O H9 5NE sing 24 n n C1B H10 5NE sing 25 n n # _atom_sites.entry_id 5HMC _atom_sites.fract_transf_matrix[1][1] 0.014756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5NE A 1 300 300 5NE 5NE . C 3 SO4 A 1 301 301 SO4 SO4 . D 3 SO4 A 1 302 302 SO4 SO4 . E 4 HOH A 1 401 16 HOH HOH . E 4 HOH A 2 402 10 HOH HOH . E 4 HOH A 3 403 19 HOH HOH . E 4 HOH A 4 404 2 HOH HOH . E 4 HOH A 5 405 1 HOH HOH . E 4 HOH A 6 406 20 HOH HOH . E 4 HOH A 7 407 18 HOH HOH . E 4 HOH A 8 408 29 HOH HOH . E 4 HOH A 9 409 12 HOH HOH . E 4 HOH A 10 410 30 HOH HOH . E 4 HOH A 11 411 7 HOH HOH . E 4 HOH A 12 412 6 HOH HOH . E 4 HOH A 13 413 9 HOH HOH . E 4 HOH A 14 414 8 HOH HOH . E 4 HOH A 15 415 5 HOH HOH . E 4 HOH A 16 416 4 HOH HOH . E 4 HOH A 17 417 15 HOH HOH . E 4 HOH A 18 418 22 HOH HOH . E 4 HOH A 19 419 3 HOH HOH . E 4 HOH A 20 420 13 HOH HOH . E 4 HOH A 21 421 17 HOH HOH . E 4 HOH A 22 422 11 HOH HOH . E 4 HOH A 23 423 28 HOH HOH . E 4 HOH A 24 424 27 HOH HOH . E 4 HOH A 25 425 24 HOH HOH . E 4 HOH A 26 426 26 HOH HOH . E 4 HOH A 27 427 21 HOH HOH . E 4 HOH A 28 428 25 HOH HOH . E 4 HOH A 29 429 23 HOH HOH . E 4 HOH A 30 430 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1N 5NE . . . B 2 27.001 -22.806 -9.772 1 53.69 ? O1N 5NE 300 A 1 HETATM 2 C C1L 5NE . . . B 2 25.975 -22.099 -9.661 1 48.64 ? C1L 5NE 300 A 1 HETATM 3 O O1M 5NE . . . B 2 24.878 -22.56 -9.3 1 45.18 ? O1M 5NE 300 A 1 HETATM 4 C C1J 5NE . . . B 2 26.14 -20.641 -9.942 1 50.19 ? C1J 5NE 300 A 1 HETATM 5 C C1E 5NE . . . B 2 26.642 -20.175 -11.252 1 45.16 ? C1E 5NE 300 A 1 HETATM 6 C C1F 5NE . . . B 2 26.963 -21.03 -12.304 1 49.35 ? C1F 5NE 300 A 1 HETATM 7 C C1A 5NE . . . B 2 27.427 -20.505 -13.514 1 47.44 ? C1A 5NE 300 A 1 HETATM 8 C C1I 5NE . . . B 2 25.864 -19.699 -8.952 1 51.44 ? C1I 5NE 300 A 1 HETATM 9 C C1H 5NE . . . B 2 26.042 -18.33 -9.172 1 50.45 ? C1H 5NE 300 A 1 HETATM 10 C C1G 5NE . . . B 2 26.504 -17.836 -10.388 1 51.02 ? C1G 5NE 300 A 1 HETATM 11 C C1D 5NE . . . B 2 26.805 -18.718 -11.413 1 47.86 ? C1D 5NE 300 A 1 HETATM 12 C C1C 5NE . . . B 2 27.303 -18.211 -12.692 1 53.13 ? C1C 5NE 300 A 1 HETATM 13 C C1O 5NE . . . B 2 27.457 -16.719 -12.826 1 57.15 ? C1O 5NE 300 A 1 HETATM 14 C C1B 5NE . . . B 2 27.594 -19.127 -13.709 1 52.29 ? C1B 5NE 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #