data_5HMH # _model_server_result.job_id idYL8AcZTholVBsjwPOmRg _model_server_result.datetime_utc '2024-10-12 15:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4000}' # _entry.id 5HMH # _exptl.entry_id 5HMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 756.755 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[2-(4-{[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]carbonyl}piperazin-1-yl)phenoxy]butanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HMH _cell.length_a 39.64 _cell.length_b 39.127 _cell.length_c 132.337 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C35 H38 F6 N4 O6 S' _chem_comp.formula_weight 756.755 _chem_comp.id 62R _chem_comp.mon_nstd_flag . _chem_comp.name '4-[2-(4-{[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]carbonyl}piperazin-1-yl)phenoxy]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C21 62R doub 1 n y N3 C20 62R sing 2 n y C21 C22 62R sing 3 n y C20 C19 62R doub 4 n y C22 C23 62R doub 5 n y C27 C26 62R sing 6 n n C26 C25 62R sing 7 n n C19 C23 62R sing 8 n y C19 C18 62R sing 9 n n C23 C24 62R sing 10 n n C18 O4 62R doub 11 n n C18 N2 62R sing 12 n n C25 C14 62R sing 13 n n N2 C15 62R sing 14 n n N2 C14 62R sing 15 n n C24 F1 62R sing 16 n n C24 F 62R sing 17 n n C24 F2 62R sing 18 n n C15 C16 62R sing 19 n n C14 C13 62R sing 20 n n C16 C17 62R sing 21 n n C13 C17 62R sing 22 n n C13 O5 62R sing 23 n n C13 C12 62R sing 24 n n C33 N1 62R sing 25 n n C33 C34 62R sing 26 n n O5 C28 62R sing 27 n n C12 N1 62R sing 28 n n C12 O3 62R doub 29 n n N1 C11 62R sing 30 n n C34 N 62R sing 31 n n C11 C10 62R sing 32 n n C28 C31 62R sing 33 n y C28 C29 62R doub 34 n y C31 C30 62R doub 35 n y N C10 62R sing 36 n n N C 62R sing 37 n n C8 C7 62R sing 38 n n C8 C9 62R sing 39 n n C7 C6 62R sing 40 n n C29 S 62R sing 41 n y O C6 62R sing 42 n n O C1 62R sing 43 n n C C1 62R doub 44 n y C C5 62R sing 45 n y C30 C32 62R sing 46 n n C30 S 62R sing 47 n y F3 C32 62R sing 48 n n C9 O2 62R doub 49 n n C9 O1 62R sing 50 n n C1 C2 62R sing 51 n y C5 C4 62R doub 52 n y C32 F5 62R sing 53 n n C32 F4 62R sing 54 n n C2 C3 62R doub 55 n y C4 C3 62R sing 56 n y C2 H1 62R sing 57 n n C3 H2 62R sing 58 n n C4 H3 62R sing 59 n n C5 H4 62R sing 60 n n C6 H5 62R sing 61 n n C6 H6 62R sing 62 n n C10 H7 62R sing 63 n n C10 H8 62R sing 64 n n C11 H9 62R sing 65 n n C11 H10 62R sing 66 n n C15 H11 62R sing 67 n n C15 H12 62R sing 68 n n C22 H13 62R sing 69 n n C26 H14 62R sing 70 n n C26 H15 62R sing 71 n n C29 H16 62R sing 72 n n C31 H17 62R sing 73 n n C17 H18 62R sing 74 n n C17 H19 62R sing 75 n n C16 H20 62R sing 76 n n C16 H21 62R sing 77 n n C21 H22 62R sing 78 n n C20 H23 62R sing 79 n n C14 H24 62R sing 80 n n C25 H25 62R sing 81 n n C25 H26 62R sing 82 n n C27 H27 62R sing 83 n n C27 H28 62R sing 84 n n C27 H29 62R sing 85 n n C33 H30 62R sing 86 n n C33 H31 62R sing 87 n n C34 H32 62R sing 88 n n C34 H33 62R sing 89 n n C7 H34 62R sing 90 n n C7 H35 62R sing 91 n n C8 H36 62R sing 92 n n C8 H37 62R sing 93 n n O1 H38 62R sing 94 n n # _atom_sites.entry_id 5HMH _atom_sites.fract_transf_matrix[1][1] 0.025227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 62R A 1 201 4000 62R 113 . D 3 SO4 A 1 202 1 SO4 SO4 . E 2 62R B 1 4000 4000 62R 113 . F 4 HOH A 1 301 7 HOH HOH . F 4 HOH A 2 302 14 HOH HOH . F 4 HOH A 3 303 65 HOH HOH . F 4 HOH A 4 304 94 HOH HOH . F 4 HOH A 5 305 5 HOH HOH . F 4 HOH A 6 306 32 HOH HOH . F 4 HOH A 7 307 75 HOH HOH . F 4 HOH A 8 308 83 HOH HOH . F 4 HOH A 9 309 37 HOH HOH . F 4 HOH A 10 310 70 HOH HOH . F 4 HOH A 11 311 63 HOH HOH . F 4 HOH A 12 312 41 HOH HOH . F 4 HOH A 13 313 22 HOH HOH . F 4 HOH A 14 314 11 HOH HOH . F 4 HOH A 15 315 44 HOH HOH . F 4 HOH A 16 316 33 HOH HOH . F 4 HOH A 17 317 46 HOH HOH . F 4 HOH A 18 318 10 HOH HOH . F 4 HOH A 19 319 60 HOH HOH . F 4 HOH A 20 320 54 HOH HOH . F 4 HOH A 21 321 69 HOH HOH . F 4 HOH A 22 322 90 HOH HOH . F 4 HOH A 23 323 77 HOH HOH . F 4 HOH A 24 324 21 HOH HOH . F 4 HOH A 25 325 64 HOH HOH . F 4 HOH A 26 326 24 HOH HOH . F 4 HOH A 27 327 13 HOH HOH . F 4 HOH A 28 328 74 HOH HOH . F 4 HOH A 29 329 2 HOH HOH . F 4 HOH A 30 330 85 HOH HOH . F 4 HOH A 31 331 43 HOH HOH . F 4 HOH A 32 332 8 HOH HOH . F 4 HOH A 33 333 40 HOH HOH . F 4 HOH A 34 334 49 HOH HOH . F 4 HOH A 35 335 29 HOH HOH . F 4 HOH A 36 336 9 HOH HOH . F 4 HOH A 37 337 20 HOH HOH . F 4 HOH A 38 338 88 HOH HOH . F 4 HOH A 39 339 34 HOH HOH . F 4 HOH A 40 340 17 HOH HOH . F 4 HOH A 41 341 45 HOH HOH . F 4 HOH A 42 342 86 HOH HOH . F 4 HOH A 43 343 81 HOH HOH . F 4 HOH A 44 344 82 HOH HOH . F 4 HOH A 45 345 1 HOH HOH . F 4 HOH A 46 346 50 HOH HOH . F 4 HOH A 47 347 73 HOH HOH . F 4 HOH A 48 348 95 HOH HOH . F 4 HOH A 49 349 6 HOH HOH . F 4 HOH A 50 350 58 HOH HOH . F 4 HOH A 51 351 62 HOH HOH . F 4 HOH A 52 352 48 HOH HOH . F 4 HOH A 53 353 76 HOH HOH . F 4 HOH A 54 354 31 HOH HOH . F 4 HOH A 55 355 97 HOH HOH . F 4 HOH A 56 356 100 HOH HOH . F 4 HOH A 57 357 39 HOH HOH . F 4 HOH A 58 358 28 HOH HOH . F 4 HOH A 59 359 19 HOH HOH . F 4 HOH A 60 360 99 HOH HOH . F 4 HOH A 61 361 87 HOH HOH . F 4 HOH A 62 362 61 HOH HOH . F 4 HOH A 63 363 25 HOH HOH . F 4 HOH A 64 364 91 HOH HOH . F 4 HOH A 65 365 92 HOH HOH . G 4 HOH B 1 4101 36 HOH HOH . G 4 HOH B 2 4102 35 HOH HOH . G 4 HOH B 3 4103 68 HOH HOH . G 4 HOH B 4 4104 89 HOH HOH . G 4 HOH B 5 4105 59 HOH HOH . G 4 HOH B 6 4106 53 HOH HOH . G 4 HOH B 7 4107 93 HOH HOH . G 4 HOH B 8 4108 98 HOH HOH . G 4 HOH B 9 4109 27 HOH HOH . G 4 HOH B 10 4110 52 HOH HOH . G 4 HOH B 11 4111 55 HOH HOH . G 4 HOH B 12 4112 15 HOH HOH . G 4 HOH B 13 4113 84 HOH HOH . G 4 HOH B 14 4114 3 HOH HOH . G 4 HOH B 15 4115 71 HOH HOH . G 4 HOH B 16 4116 72 HOH HOH . G 4 HOH B 17 4117 18 HOH HOH . G 4 HOH B 18 4118 67 HOH HOH . G 4 HOH B 19 4119 96 HOH HOH . G 4 HOH B 20 4120 66 HOH HOH . G 4 HOH B 21 4121 57 HOH HOH . G 4 HOH B 22 4122 16 HOH HOH . G 4 HOH B 23 4123 4 HOH HOH . G 4 HOH B 24 4124 12 HOH HOH . G 4 HOH B 25 4125 78 HOH HOH . G 4 HOH B 26 4126 79 HOH HOH . G 4 HOH B 27 4127 23 HOH HOH . G 4 HOH B 28 4128 38 HOH HOH . G 4 HOH B 29 4129 30 HOH HOH . G 4 HOH B 30 4130 26 HOH HOH . G 4 HOH B 31 4131 56 HOH HOH . G 4 HOH B 32 4132 80 HOH HOH . G 4 HOH B 33 4133 42 HOH HOH . G 4 HOH B 34 4134 47 HOH HOH . G 4 HOH B 35 4135 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 62R . . . E 2 -13.712 8.312 12.251 1 49.91 ? C1 62R 4000 B 1 HETATM 2 C C2 62R . . . E 2 -14.047 8.854 10.966 1 49.61 ? C2 62R 4000 B 1 HETATM 3 C C3 62R . . . E 2 -13.046 9.413 10.161 1 50.3 ? C3 62R 4000 B 1 HETATM 4 C C4 62R . . . E 2 -11.718 9.44 10.618 1 48.84 ? C4 62R 4000 B 1 HETATM 5 C C5 62R . . . E 2 -11.379 8.889 11.882 1 49.02 ? C5 62R 4000 B 1 HETATM 6 C C6 62R . . . E 2 -15.919 7.349 12.625 1 55.14 ? C6 62R 4000 B 1 HETATM 7 C C9 62R . . . E 2 -17.75 4.381 14.127 1 73.16 ? C9 62R 4000 B 1 HETATM 8 C C10 62R . . . E 2 -12.26 6.13 13.92 1 45.86 ? C10 62R 4000 B 1 HETATM 9 C C11 62R . . . E 2 -12.215 5.484 15.322 1 45.12 ? C11 62R 4000 B 1 HETATM 10 C C12 62R . . . E 2 -9.906 4.792 16.089 1 44.47 ? C12 62R 4000 B 1 HETATM 11 C C13 62R . . . E 2 -8.486 5.082 16.641 1 43.4 ? C13 62R 4000 B 1 HETATM 12 C C15 62R . . . E 2 -6.197 4.75 18.446 1 46.2 ? C15 62R 4000 B 1 HETATM 13 C C18 62R . . . E 2 -6.905 7.151 19.141 1 49.79 ? C18 62R 4000 B 1 HETATM 14 C C22 62R . . . E 2 -3.362 8.318 20.25 1 52.42 ? C22 62R 4000 B 1 HETATM 15 C C26 62R . . . E 2 -9.515 5.17 20.549 1 42.65 ? C26 62R 4000 B 1 HETATM 16 F F5 62R . . . E 2 -7.615 9.224 11.297 1 53.27 ? F5 62R 4000 B 1 HETATM 17 C C32 62R . . . E 2 -6.647 8.435 11.737 1 52.06 ? C32 62R 4000 B 1 HETATM 18 F F3 62R . . . E 2 -5.789 9.294 12.278 1 53.93 ? F3 62R 4000 B 1 HETATM 19 F F4 62R . . . E 2 -6.02 7.991 10.661 1 53.74 ? F4 62R 4000 B 1 HETATM 20 C C30 62R . . . E 2 -7.147 7.335 12.633 1 47.44 ? C30 62R 4000 B 1 HETATM 21 S S 62R . . . E 2 -7.796 5.88 12.079 1 46.76 ? S 62R 4000 B 1 HETATM 22 C C29 62R . . . E 2 -8.103 5.369 13.67 1 45.34 ? C29 62R 4000 B 1 HETATM 23 C C31 62R . . . E 2 -7.135 7.455 13.983 1 47.15 ? C31 62R 4000 B 1 HETATM 24 C C28 62R . . . E 2 -7.704 6.306 14.599 1 45.2 ? C28 62R 4000 B 1 HETATM 25 O O5 62R . . . E 2 -7.878 6.207 15.946 1 48.01 ? O5 62R 4000 B 1 HETATM 26 C C17 62R . . . E 2 -7.578 3.808 16.569 1 43.82 ? C17 62R 4000 B 1 HETATM 27 C C16 62R . . . E 2 -6.171 4.116 17.057 1 42.55 ? C16 62R 4000 B 1 HETATM 28 N N2 62R . . . E 2 -7.187 5.872 18.587 1 47.27 ? N2 62R 4000 B 1 HETATM 29 C C19 62R . . . E 2 -5.58 7.342 19.857 1 49.5 ? C19 62R 4000 B 1 HETATM 30 C C23 62R . . . E 2 -4.493 8.137 19.409 1 51.16 ? C23 62R 4000 B 1 HETATM 31 C C24 62R . . . E 2 -4.535 8.82 18.057 1 51.72 ? C24 62R 4000 B 1 HETATM 32 F F2 62R . . . E 2 -5.01 8.051 17.079 1 47.87 ? F2 62R 4000 B 1 HETATM 33 F F1 62R . . . E 2 -5.29 9.917 18.087 1 55.38 ? F1 62R 4000 B 1 HETATM 34 F F 62R . . . E 2 -3.377 9.209 17.562 1 54.4 ? F 62R 4000 B 1 HETATM 35 C C21 62R . . . E 2 -3.365 7.671 21.51 1 51.58 ? C21 62R 4000 B 1 HETATM 36 N N3 62R . . . E 2 -4.396 6.885 21.941 1 52.02 ? N3 62R 4000 B 1 HETATM 37 C C20 62R . . . E 2 -5.46 6.728 21.137 1 52.83 ? C20 62R 4000 B 1 HETATM 38 O O4 62R . . . E 2 -7.694 8.096 19.047 1 50.51 ? O4 62R 4000 B 1 HETATM 39 C C14 62R . . . E 2 -8.586 5.589 18.129 1 44.48 ? C14 62R 4000 B 1 HETATM 40 C C25 62R . . . E 2 -9.395 4.646 19.104 1 42.12 ? C25 62R 4000 B 1 HETATM 41 C C27 62R . . . E 2 -10.479 4.269 21.318 1 42.87 ? C27 62R 4000 B 1 HETATM 42 O O3 62R . . . E 2 -10.148 3.634 15.777 1 46.58 ? O3 62R 4000 B 1 HETATM 43 N N1 62R . . . E 2 -10.88 5.84 15.938 1 45.54 ? N1 62R 4000 B 1 HETATM 44 C C33 62R . . . E 2 -10.692 7.333 16.093 1 44.19 ? C33 62R 4000 B 1 HETATM 45 C C34 62R . . . E 2 -10.847 8.054 14.731 1 43.62 ? C34 62R 4000 B 1 HETATM 46 N N 62R . . . E 2 -12.098 7.641 13.999 1 46.97 ? N 62R 4000 B 1 HETATM 47 C C 62R . . . E 2 -12.36 8.303 12.716 1 48.37 ? C 62R 4000 B 1 HETATM 48 O O 62R . . . E 2 -14.678 7.838 13.12 1 50.19 ? O 62R 4000 B 1 HETATM 49 C C7 62R . . . E 2 -16.531 6.546 13.781 1 58.95 ? C7 62R 4000 B 1 HETATM 50 C C8 62R . . . E 2 -17.65 5.641 13.286 1 67.52 ? C8 62R 4000 B 1 HETATM 51 O O1 62R . . . E 2 -16.948 3.994 14.964 1 74.63 ? O1 62R 4000 B 1 HETATM 52 O O2 62R . . . E 2 -18.827 3.576 13.976 1 77.77 ? O2 62R 4000 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #