data_5HMI # _model_server_result.job_id QPwnjftdF8RXoPl8EFHM-A _model_server_result.datetime_utc '2025-07-02 22:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5HMI # _exptl.entry_id 5HMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 714.718 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HMI _cell.length_a 39.473 _cell.length_b 38.915 _cell.length_c 132.505 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C33 H36 F6 N4 O5 S' _chem_comp.formula_weight 714.718 _chem_comp.id 62T _chem_comp.mon_nstd_flag . _chem_comp.name {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C29 62T doub 1 n y N3 C30 62T sing 2 n y C29 C28 62T sing 3 n y C30 C25 62T doub 4 n y C28 C26 62T doub 5 n y C23 C22 62T sing 6 n n C22 C21 62T sing 7 n n C25 C26 62T sing 8 n y C25 C24 62T sing 9 n n C26 C27 62T sing 10 n n C24 O4 62T doub 11 n n C24 N2 62T sing 12 n n C21 C20 62T sing 13 n n N2 C31 62T sing 14 n n N2 C20 62T sing 15 n n F3 C27 62T sing 16 n n C27 F5 62T sing 17 n n C27 F4 62T sing 18 n n C31 C32 62T sing 19 n n C20 C1 62T sing 20 n n C32 C 62T sing 21 n n C1 C 62T sing 22 n n C1 O3 62T sing 23 n n C1 C2 62T sing 24 n n C14 N 62T sing 25 n n C14 C13 62T sing 26 n n O3 C15 62T sing 27 n n C2 N 62T sing 28 n n C2 O 62T doub 29 n n N C3 62T sing 30 n n C3 C4 62T sing 31 n n C13 N1 62T sing 32 n n C15 C19 62T sing 33 n y C15 C16 62T doub 34 n y C19 C17 62T doub 35 n y N1 C4 62T sing 36 n n N1 C5 62T sing 37 n n C16 S 62T sing 38 n y C5 C6 62T doub 39 n y C5 C10 62T sing 40 n y C17 C18 62T sing 41 n n C17 S 62T sing 42 n y O1 C10 62T sing 43 n n O1 C11 62T sing 44 n n F C18 62T sing 45 n n C12 C11 62T sing 46 n n C12 O2 62T sing 47 n n C6 C7 62T sing 48 n y C10 C9 62T doub 49 n y C18 F1 62T sing 50 n n C18 F2 62T sing 51 n n C7 C8 62T doub 52 n y C9 C8 62T sing 53 n y C3 H1 62T sing 54 n n C3 H2 62T sing 55 n n C4 H3 62T sing 56 n n C4 H4 62T sing 57 n n C7 H5 62T sing 58 n n C8 H6 62T sing 59 n n C9 H7 62T sing 60 n n C11 H8 62T sing 61 n n C11 H9 62T sing 62 n n C12 H10 62T sing 63 n n C12 H11 62T sing 64 n n C13 H12 62T sing 65 n n C13 H13 62T sing 66 n n C14 H14 62T sing 67 n n C14 H15 62T sing 68 n n C16 H16 62T sing 69 n n C19 H17 62T sing 70 n n C20 H18 62T sing 71 n n C22 H19 62T sing 72 n n C22 H20 62T sing 73 n n C23 H21 62T sing 74 n n C23 H22 62T sing 75 n n C23 H23 62T sing 76 n n C29 H24 62T sing 77 n n C30 H25 62T sing 78 n n C32 H26 62T sing 79 n n C32 H27 62T sing 80 n n C28 H28 62T sing 81 n n C31 H29 62T sing 82 n n C31 H30 62T sing 83 n n C H31 62T sing 84 n n C H32 62T sing 85 n n C21 H33 62T sing 86 n n C21 H34 62T sing 87 n n O2 H35 62T sing 88 n n C6 H36 62T sing 89 n n # _atom_sites.entry_id 5HMI _atom_sites.fract_transf_matrix[1][1] 0.025334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 62T A 1 1001 1001 62T 034 . D 3 SO4 A 1 1002 1 SO4 SO4 . E 2 62T B 1 1001 1001 62T 034 . F 4 HOH A 1 1101 45 HOH HOH . F 4 HOH A 2 1102 46 HOH HOH . F 4 HOH A 3 1103 15 HOH HOH . F 4 HOH A 4 1104 102 HOH HOH . F 4 HOH A 5 1105 62 HOH HOH . F 4 HOH A 6 1106 11 HOH HOH . F 4 HOH A 7 1107 51 HOH HOH . F 4 HOH A 8 1108 34 HOH HOH . F 4 HOH A 9 1109 80 HOH HOH . F 4 HOH A 10 1110 82 HOH HOH . F 4 HOH A 11 1111 32 HOH HOH . F 4 HOH A 12 1112 44 HOH HOH . F 4 HOH A 13 1113 50 HOH HOH . F 4 HOH A 14 1114 60 HOH HOH . F 4 HOH A 15 1115 77 HOH HOH . F 4 HOH A 16 1116 3 HOH HOH . F 4 HOH A 17 1117 84 HOH HOH . F 4 HOH A 18 1118 30 HOH HOH . F 4 HOH A 19 1119 52 HOH HOH . F 4 HOH A 20 1120 74 HOH HOH . F 4 HOH A 21 1121 23 HOH HOH . F 4 HOH A 22 1122 85 HOH HOH . F 4 HOH A 23 1123 17 HOH HOH . F 4 HOH A 24 1124 6 HOH HOH . F 4 HOH A 25 1125 57 HOH HOH . F 4 HOH A 26 1126 70 HOH HOH . F 4 HOH A 27 1127 7 HOH HOH . F 4 HOH A 28 1128 38 HOH HOH . F 4 HOH A 29 1129 90 HOH HOH . F 4 HOH A 30 1130 36 HOH HOH . F 4 HOH A 31 1131 4 HOH HOH . F 4 HOH A 32 1132 5 HOH HOH . F 4 HOH A 33 1133 31 HOH HOH . F 4 HOH A 34 1134 53 HOH HOH . F 4 HOH A 35 1135 83 HOH HOH . F 4 HOH A 36 1136 35 HOH HOH . F 4 HOH A 37 1137 24 HOH HOH . F 4 HOH A 38 1138 1 HOH HOH . F 4 HOH A 39 1139 96 HOH HOH . F 4 HOH A 40 1140 68 HOH HOH . F 4 HOH A 41 1141 42 HOH HOH . F 4 HOH A 42 1142 25 HOH HOH . F 4 HOH A 43 1143 22 HOH HOH . F 4 HOH A 44 1144 55 HOH HOH . F 4 HOH A 45 1145 91 HOH HOH . F 4 HOH A 46 1146 9 HOH HOH . F 4 HOH A 47 1147 39 HOH HOH . F 4 HOH A 48 1148 87 HOH HOH . F 4 HOH A 49 1149 33 HOH HOH . F 4 HOH A 50 1150 29 HOH HOH . F 4 HOH A 51 1151 104 HOH HOH . F 4 HOH A 52 1152 54 HOH HOH . F 4 HOH A 53 1153 92 HOH HOH . F 4 HOH A 54 1154 58 HOH HOH . F 4 HOH A 55 1155 76 HOH HOH . F 4 HOH A 56 1156 14 HOH HOH . F 4 HOH A 57 1157 93 HOH HOH . F 4 HOH A 58 1158 101 HOH HOH . F 4 HOH A 59 1159 98 HOH HOH . F 4 HOH A 60 1160 37 HOH HOH . F 4 HOH A 61 1161 99 HOH HOH . F 4 HOH A 62 1162 26 HOH HOH . F 4 HOH A 63 1163 97 HOH HOH . F 4 HOH A 64 1164 108 HOH HOH . G 4 HOH B 1 1101 49 HOH HOH . G 4 HOH B 2 1102 28 HOH HOH . G 4 HOH B 3 1103 43 HOH HOH . G 4 HOH B 4 1104 12 HOH HOH . G 4 HOH B 5 1105 73 HOH HOH . G 4 HOH B 6 1106 41 HOH HOH . G 4 HOH B 7 1107 8 HOH HOH . G 4 HOH B 8 1108 48 HOH HOH . G 4 HOH B 9 1109 40 HOH HOH . G 4 HOH B 10 1110 65 HOH HOH . G 4 HOH B 11 1111 107 HOH HOH . G 4 HOH B 12 1112 95 HOH HOH . G 4 HOH B 13 1113 13 HOH HOH . G 4 HOH B 14 1114 16 HOH HOH . G 4 HOH B 15 1115 64 HOH HOH . G 4 HOH B 16 1116 106 HOH HOH . G 4 HOH B 17 1117 56 HOH HOH . G 4 HOH B 18 1118 79 HOH HOH . G 4 HOH B 19 1119 69 HOH HOH . G 4 HOH B 20 1120 47 HOH HOH . G 4 HOH B 21 1121 21 HOH HOH . G 4 HOH B 22 1122 10 HOH HOH . G 4 HOH B 23 1123 19 HOH HOH . G 4 HOH B 24 1124 66 HOH HOH . G 4 HOH B 25 1125 63 HOH HOH . G 4 HOH B 26 1126 100 HOH HOH . G 4 HOH B 27 1127 72 HOH HOH . G 4 HOH B 28 1128 103 HOH HOH . G 4 HOH B 29 1129 71 HOH HOH . G 4 HOH B 30 1130 18 HOH HOH . G 4 HOH B 31 1131 59 HOH HOH . G 4 HOH B 32 1132 81 HOH HOH . G 4 HOH B 33 1133 2 HOH HOH . G 4 HOH B 34 1134 27 HOH HOH . G 4 HOH B 35 1135 105 HOH HOH . G 4 HOH B 36 1136 75 HOH HOH . G 4 HOH B 37 1137 86 HOH HOH . G 4 HOH B 38 1138 89 HOH HOH . G 4 HOH B 39 1139 88 HOH HOH . G 4 HOH B 40 1140 94 HOH HOH . G 4 HOH B 41 1141 20 HOH HOH . G 4 HOH B 42 1142 78 HOH HOH . G 4 HOH B 43 1143 67 HOH HOH . G 4 HOH B 44 1144 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 62T . . . C 2 -12.86 0.454 17.171 1 36.76 ? C1 62T 1001 A 1 HETATM 2 C C2 62T . . . C 2 -12.6 1.829 17.855 1 37.59 ? C2 62T 1001 A 1 HETATM 3 C C3 62T . . . C 2 -13.163 4.056 18.767 1 42.55 ? C3 62T 1001 A 1 HETATM 4 C C4 62T . . . C 2 -14.11 4.148 19.997 1 39.52 ? C4 62T 1001 A 1 HETATM 5 C C7 62T . . . C 2 -18.177 3.5 22.366 1 37.26 ? C7 62T 1001 A 1 HETATM 6 C C8 62T . . . C 2 -18.173 4.753 22.998 1 39.04 ? C8 62T 1001 A 1 HETATM 7 C C9 62T . . . C 2 -17.362 5.788 22.521 1 39.73 ? C9 62T 1001 A 1 HETATM 8 C C11 62T . . . C 2 -15.886 7.915 21.401 1 54.24 ? C11 62T 1001 A 1 HETATM 9 C C12 62T . . . C 2 -14.463 8.501 21.196 1 57.87 ? C12 62T 1001 A 1 HETATM 10 C C13 62T . . . C 2 -15.934 2.902 18.773 1 34.87 ? C13 62T 1001 A 1 HETATM 11 C C14 62T . . . C 2 -15.001 2.854 17.524 1 39.15 ? C14 62T 1001 A 1 HETATM 12 C C15 62T . . . C 2 -14.448 -0.321 18.95 1 36.96 ? C15 62T 1001 A 1 HETATM 13 C C16 62T . . . C 2 -13.576 -0.032 20.021 1 35.23 ? C16 62T 1001 A 1 HETATM 14 C C17 62T . . . C 2 -15.686 -0.854 20.767 1 32.79 ? C17 62T 1001 A 1 HETATM 15 C C18 62T . . . C 2 -16.901 -1.345 21.504 1 36.08 ? C18 62T 1001 A 1 HETATM 16 C C19 62T . . . C 2 -15.705 -0.808 19.407 1 36.46 ? C19 62T 1001 A 1 HETATM 17 C C20 62T . . . C 2 -13.1 0.672 15.623 1 38.92 ? C20 62T 1001 A 1 HETATM 18 C C22 62T . . . C 2 -12.299 1.921 13.409 1 44.73 ? C22 62T 1001 A 1 HETATM 19 C C23 62T . . . C 2 -13.653 2.643 13.323 1 44.89 ? C23 62T 1001 A 1 HETATM 20 C C24 62T . . . C 2 -14.534 -0.826 14.28 1 43.16 ? C24 62T 1001 A 1 HETATM 21 C C25 62T . . . C 2 -14.644 -2.103 13.461 1 44.48 ? C25 62T 1001 A 1 HETATM 22 C C26 62T . . . C 2 -15.513 -3.174 13.779 1 44.16 ? C26 62T 1001 A 1 HETATM 23 C C29 62T . . . C 2 -14.824 -4.282 11.709 1 46.74 ? C29 62T 1001 A 1 HETATM 24 C C30 62T . . . C 2 -13.861 -2.15 12.265 1 46.52 ? C30 62T 1001 A 1 HETATM 25 C C32 62T . . . C 2 -11.946 -1.914 16.677 1 37.92 ? C32 62T 1001 A 1 HETATM 26 F F5 62T . . . C 2 -16.892 -4.286 15.419 1 45.15 ? F5 62T 1001 A 1 HETATM 27 C C27 62T . . . C 2 -16.388 -3.116 15.067 1 44.92 ? C27 62T 1001 A 1 HETATM 28 F F3 62T . . . C 2 -17.429 -2.293 14.962 1 47.98 ? F3 62T 1001 A 1 HETATM 29 F F4 62T . . . C 2 -15.697 -2.698 16.111 1 41.52 ? F4 62T 1001 A 1 HETATM 30 C C28 62T . . . C 2 -15.605 -4.275 12.893 1 45.23 ? C28 62T 1001 A 1 HETATM 31 N N3 62T . . . C 2 -13.97 -3.231 11.42 1 47.02 1 N3 62T 1001 A 1 HETATM 32 O O4 62T . . . C 2 -15.496 -0.07 14.303 1 44.95 ? O4 62T 1001 A 1 HETATM 33 N N2 62T . . . C 2 -13.308 -0.632 14.931 1 41.11 ? N2 62T 1001 A 1 HETATM 34 C C31 62T . . . C 2 -12.327 -1.756 15.188 1 41.28 ? C31 62T 1001 A 1 HETATM 35 C C 62T . . . C 2 -11.661 -0.548 17.319 1 38.5 ? C 62T 1001 A 1 HETATM 36 C C21 62T . . . C 2 -11.969 1.468 14.861 1 42.51 ? C21 62T 1001 A 1 HETATM 37 O O3 62T . . . C 2 -14.11 -0.159 17.633 1 37.73 ? O3 62T 1001 A 1 HETATM 38 F F2 62T . . . C 2 -16.579 -1.961 22.604 1 38.12 ? F2 62T 1001 A 1 HETATM 39 F F1 62T . . . C 2 -17.727 -0.394 21.85 1 37.4 ? F1 62T 1001 A 1 HETATM 40 F F 62T . . . C 2 -17.65 -2.201 20.854 1 36.86 ? F 62T 1001 A 1 HETATM 41 S S 62T . . . C 2 -14.263 -0.357 21.519 1 34.19 ? S 62T 1001 A 1 HETATM 42 O O 62T . . . C 2 -11.457 2.037 18.31 1 38.33 ? O 62T 1001 A 1 HETATM 43 N N 62T . . . C 2 -13.567 2.836 18.001 1 38.61 ? N 62T 1001 A 1 HETATM 44 N N1 62T . . . C 2 -15.598 4.109 19.596 1 36.31 ? N1 62T 1001 A 1 HETATM 45 C C5 62T . . . C 2 -16.504 4.296 20.724 1 37.95 ? C5 62T 1001 A 1 HETATM 46 C C10 62T . . . C 2 -16.532 5.573 21.368 1 42 ? C10 62T 1001 A 1 HETATM 47 O O1 62T . . . C 2 -15.788 6.609 20.834 1 48.88 ? O1 62T 1001 A 1 HETATM 48 O O2 62T . . . C 2 -13.525 7.688 21.857 1 58.39 ? O2 62T 1001 A 1 HETATM 49 C C6 62T . . . C 2 -17.35 3.28 21.248 1 36.26 ? C6 62T 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #