data_5HMI # _model_server_result.job_id UgXmdmLgMwecAA276IMBEA _model_server_result.datetime_utc '2024-10-28 02:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hmi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 5HMI # _exptl.entry_id 5HMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 714.718 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]methanone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HMI _cell.length_a 39.473 _cell.length_b 38.915 _cell.length_c 132.505 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C33 H36 F6 N4 O5 S' _chem_comp.formula_weight 714.718 _chem_comp.id 62T _chem_comp.mon_nstd_flag . _chem_comp.name {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}-3-{[5-(trifluoromethyl)thiophen-3-yl]oxy}piperidin-3-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C29 62T doub 1 n y N3 C30 62T sing 2 n y C29 C28 62T sing 3 n y C30 C25 62T doub 4 n y C28 C26 62T doub 5 n y C23 C22 62T sing 6 n n C22 C21 62T sing 7 n n C25 C26 62T sing 8 n y C25 C24 62T sing 9 n n C26 C27 62T sing 10 n n C24 O4 62T doub 11 n n C24 N2 62T sing 12 n n C21 C20 62T sing 13 n n N2 C31 62T sing 14 n n N2 C20 62T sing 15 n n F3 C27 62T sing 16 n n C27 F5 62T sing 17 n n C27 F4 62T sing 18 n n C31 C32 62T sing 19 n n C20 C1 62T sing 20 n n C32 C 62T sing 21 n n C1 C 62T sing 22 n n C1 O3 62T sing 23 n n C1 C2 62T sing 24 n n C14 N 62T sing 25 n n C14 C13 62T sing 26 n n O3 C15 62T sing 27 n n C2 N 62T sing 28 n n C2 O 62T doub 29 n n N C3 62T sing 30 n n C3 C4 62T sing 31 n n C13 N1 62T sing 32 n n C15 C19 62T sing 33 n y C15 C16 62T doub 34 n y C19 C17 62T doub 35 n y N1 C4 62T sing 36 n n N1 C5 62T sing 37 n n C16 S 62T sing 38 n y C5 C6 62T doub 39 n y C5 C10 62T sing 40 n y C17 C18 62T sing 41 n n C17 S 62T sing 42 n y O1 C10 62T sing 43 n n O1 C11 62T sing 44 n n F C18 62T sing 45 n n C12 C11 62T sing 46 n n C12 O2 62T sing 47 n n C6 C7 62T sing 48 n y C10 C9 62T doub 49 n y C18 F1 62T sing 50 n n C18 F2 62T sing 51 n n C7 C8 62T doub 52 n y C9 C8 62T sing 53 n y C3 H1 62T sing 54 n n C3 H2 62T sing 55 n n C4 H3 62T sing 56 n n C4 H4 62T sing 57 n n C7 H5 62T sing 58 n n C8 H6 62T sing 59 n n C9 H7 62T sing 60 n n C11 H8 62T sing 61 n n C11 H9 62T sing 62 n n C12 H10 62T sing 63 n n C12 H11 62T sing 64 n n C13 H12 62T sing 65 n n C13 H13 62T sing 66 n n C14 H14 62T sing 67 n n C14 H15 62T sing 68 n n C16 H16 62T sing 69 n n C19 H17 62T sing 70 n n C20 H18 62T sing 71 n n C22 H19 62T sing 72 n n C22 H20 62T sing 73 n n C23 H21 62T sing 74 n n C23 H22 62T sing 75 n n C23 H23 62T sing 76 n n C29 H24 62T sing 77 n n C30 H25 62T sing 78 n n C32 H26 62T sing 79 n n C32 H27 62T sing 80 n n C28 H28 62T sing 81 n n C31 H29 62T sing 82 n n C31 H30 62T sing 83 n n C H31 62T sing 84 n n C H32 62T sing 85 n n C21 H33 62T sing 86 n n C21 H34 62T sing 87 n n O2 H35 62T sing 88 n n C6 H36 62T sing 89 n n # _atom_sites.entry_id 5HMI _atom_sites.fract_transf_matrix[1][1] 0.025334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 62T A 1 1001 1001 62T 034 . D 3 SO4 A 1 1002 1 SO4 SO4 . E 2 62T B 1 1001 1001 62T 034 . F 4 HOH A 1 1101 45 HOH HOH . F 4 HOH A 2 1102 46 HOH HOH . F 4 HOH A 3 1103 15 HOH HOH . F 4 HOH A 4 1104 102 HOH HOH . F 4 HOH A 5 1105 62 HOH HOH . F 4 HOH A 6 1106 11 HOH HOH . F 4 HOH A 7 1107 51 HOH HOH . F 4 HOH A 8 1108 34 HOH HOH . F 4 HOH A 9 1109 80 HOH HOH . F 4 HOH A 10 1110 82 HOH HOH . F 4 HOH A 11 1111 32 HOH HOH . F 4 HOH A 12 1112 44 HOH HOH . F 4 HOH A 13 1113 50 HOH HOH . F 4 HOH A 14 1114 60 HOH HOH . F 4 HOH A 15 1115 77 HOH HOH . F 4 HOH A 16 1116 3 HOH HOH . F 4 HOH A 17 1117 84 HOH HOH . F 4 HOH A 18 1118 30 HOH HOH . F 4 HOH A 19 1119 52 HOH HOH . F 4 HOH A 20 1120 74 HOH HOH . F 4 HOH A 21 1121 23 HOH HOH . F 4 HOH A 22 1122 85 HOH HOH . F 4 HOH A 23 1123 17 HOH HOH . F 4 HOH A 24 1124 6 HOH HOH . F 4 HOH A 25 1125 57 HOH HOH . F 4 HOH A 26 1126 70 HOH HOH . F 4 HOH A 27 1127 7 HOH HOH . F 4 HOH A 28 1128 38 HOH HOH . F 4 HOH A 29 1129 90 HOH HOH . F 4 HOH A 30 1130 36 HOH HOH . F 4 HOH A 31 1131 4 HOH HOH . F 4 HOH A 32 1132 5 HOH HOH . F 4 HOH A 33 1133 31 HOH HOH . F 4 HOH A 34 1134 53 HOH HOH . F 4 HOH A 35 1135 83 HOH HOH . F 4 HOH A 36 1136 35 HOH HOH . F 4 HOH A 37 1137 24 HOH HOH . F 4 HOH A 38 1138 1 HOH HOH . F 4 HOH A 39 1139 96 HOH HOH . F 4 HOH A 40 1140 68 HOH HOH . F 4 HOH A 41 1141 42 HOH HOH . F 4 HOH A 42 1142 25 HOH HOH . F 4 HOH A 43 1143 22 HOH HOH . F 4 HOH A 44 1144 55 HOH HOH . F 4 HOH A 45 1145 91 HOH HOH . F 4 HOH A 46 1146 9 HOH HOH . F 4 HOH A 47 1147 39 HOH HOH . F 4 HOH A 48 1148 87 HOH HOH . F 4 HOH A 49 1149 33 HOH HOH . F 4 HOH A 50 1150 29 HOH HOH . F 4 HOH A 51 1151 104 HOH HOH . F 4 HOH A 52 1152 54 HOH HOH . F 4 HOH A 53 1153 92 HOH HOH . F 4 HOH A 54 1154 58 HOH HOH . F 4 HOH A 55 1155 76 HOH HOH . F 4 HOH A 56 1156 14 HOH HOH . F 4 HOH A 57 1157 93 HOH HOH . F 4 HOH A 58 1158 101 HOH HOH . F 4 HOH A 59 1159 98 HOH HOH . F 4 HOH A 60 1160 37 HOH HOH . F 4 HOH A 61 1161 99 HOH HOH . F 4 HOH A 62 1162 26 HOH HOH . F 4 HOH A 63 1163 97 HOH HOH . F 4 HOH A 64 1164 108 HOH HOH . G 4 HOH B 1 1101 49 HOH HOH . G 4 HOH B 2 1102 28 HOH HOH . G 4 HOH B 3 1103 43 HOH HOH . G 4 HOH B 4 1104 12 HOH HOH . G 4 HOH B 5 1105 73 HOH HOH . G 4 HOH B 6 1106 41 HOH HOH . G 4 HOH B 7 1107 8 HOH HOH . G 4 HOH B 8 1108 48 HOH HOH . G 4 HOH B 9 1109 40 HOH HOH . G 4 HOH B 10 1110 65 HOH HOH . G 4 HOH B 11 1111 107 HOH HOH . G 4 HOH B 12 1112 95 HOH HOH . G 4 HOH B 13 1113 13 HOH HOH . G 4 HOH B 14 1114 16 HOH HOH . G 4 HOH B 15 1115 64 HOH HOH . G 4 HOH B 16 1116 106 HOH HOH . G 4 HOH B 17 1117 56 HOH HOH . G 4 HOH B 18 1118 79 HOH HOH . G 4 HOH B 19 1119 69 HOH HOH . G 4 HOH B 20 1120 47 HOH HOH . G 4 HOH B 21 1121 21 HOH HOH . G 4 HOH B 22 1122 10 HOH HOH . G 4 HOH B 23 1123 19 HOH HOH . G 4 HOH B 24 1124 66 HOH HOH . G 4 HOH B 25 1125 63 HOH HOH . G 4 HOH B 26 1126 100 HOH HOH . G 4 HOH B 27 1127 72 HOH HOH . G 4 HOH B 28 1128 103 HOH HOH . G 4 HOH B 29 1129 71 HOH HOH . G 4 HOH B 30 1130 18 HOH HOH . G 4 HOH B 31 1131 59 HOH HOH . G 4 HOH B 32 1132 81 HOH HOH . G 4 HOH B 33 1133 2 HOH HOH . G 4 HOH B 34 1134 27 HOH HOH . G 4 HOH B 35 1135 105 HOH HOH . G 4 HOH B 36 1136 75 HOH HOH . G 4 HOH B 37 1137 86 HOH HOH . G 4 HOH B 38 1138 89 HOH HOH . G 4 HOH B 39 1139 88 HOH HOH . G 4 HOH B 40 1140 94 HOH HOH . G 4 HOH B 41 1141 20 HOH HOH . G 4 HOH B 42 1142 78 HOH HOH . G 4 HOH B 43 1143 67 HOH HOH . G 4 HOH B 44 1144 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 62T . . . E 2 -8.352 5.256 16.688 1 44.51 ? C1 62T 1001 B 1 HETATM 2 C C2 62T . . . E 2 -9.775 4.968 16.147 1 46.54 ? C2 62T 1001 B 1 HETATM 3 C C3 62T . . . E 2 -12.081 5.564 15.41 1 46.61 ? C3 62T 1001 B 1 HETATM 4 C C4 62T . . . E 2 -12.187 6.23 14.027 1 46.83 ? C4 62T 1001 B 1 HETATM 5 C C7 62T . . . E 2 -11.723 9.475 10.646 1 48.44 ? C7 62T 1001 B 1 HETATM 6 C C8 62T . . . E 2 -13.075 9.467 10.272 1 50.64 ? C8 62T 1001 B 1 HETATM 7 C C9 62T . . . E 2 -14.049 8.942 11.13 1 51.97 ? C9 62T 1001 B 1 HETATM 8 C C11 62T . . . E 2 -15.886 7.392 12.686 1 59.43 ? C11 62T 1001 B 1 HETATM 9 C C12 62T . . . E 2 -16.702 6.901 13.903 1 63.15 ? C12 62T 1001 B 1 HETATM 10 C C13 62T . . . E 2 -10.628 8.145 14.659 1 45.43 ? C13 62T 1001 B 1 HETATM 11 C C14 62T . . . E 2 -10.582 7.478 16.062 1 46.76 ? C14 62T 1001 B 1 HETATM 12 C C15 62T . . . E 2 -7.517 6.438 14.625 1 46.81 ? C15 62T 1001 B 1 HETATM 13 C C16 62T . . . E 2 -7.975 5.469 13.748 1 44.02 ? C16 62T 1001 B 1 HETATM 14 C C17 62T . . . E 2 -6.965 7.313 12.596 1 46.39 ? C17 62T 1001 B 1 HETATM 15 C C18 62T . . . E 2 -6.484 8.376 11.647 1 50.51 ? C18 62T 1001 B 1 HETATM 16 C C19 62T . . . E 2 -6.907 7.521 13.942 1 46.9 ? C19 62T 1001 B 1 HETATM 17 C C20 62T . . . E 2 -8.494 5.804 18.143 1 44.49 ? C20 62T 1001 B 1 HETATM 18 C C22 62T . . . E 2 -9.496 5.43 20.556 1 43.78 ? C22 62T 1001 B 1 HETATM 19 C C23 62T . . . E 2 -10.376 4.474 21.349 1 46.47 ? C23 62T 1001 B 1 HETATM 20 C C24 62T . . . E 2 -6.839 7.352 19.21 1 50.01 ? C24 62T 1001 B 1 HETATM 21 C C25 62T . . . E 2 -5.515 7.529 19.961 1 48.12 ? C25 62T 1001 B 1 HETATM 22 C C26 62T . . . E 2 -4.42 8.312 19.492 1 50.64 ? C26 62T 1001 B 1 HETATM 23 C C29 62T . . . E 2 -3.25 7.864 21.598 1 51.48 ? C29 62T 1001 B 1 HETATM 24 C C30 62T . . . E 2 -5.431 6.917 21.231 1 52.97 ? C30 62T 1001 B 1 HETATM 25 C C32 62T . . . E 2 -5.999 4.319 17.179 1 46.71 ? C32 62T 1001 B 1 HETATM 26 F F5 62T . . . E 2 -3.331 9.38 17.619 1 54.23 ? F5 62T 1001 B 1 HETATM 27 C C27 62T . . . E 2 -4.485 8.973 18.091 1 51.82 ? C27 62T 1001 B 1 HETATM 28 F F3 62T . . . E 2 -5.275 10.038 18.126 1 56.92 ? F3 62T 1001 B 1 HETATM 29 F F4 62T . . . E 2 -4.951 8.175 17.133 1 45.91 ? F4 62T 1001 B 1 HETATM 30 C C28 62T . . . E 2 -3.282 8.482 20.331 1 50.42 ? C28 62T 1001 B 1 HETATM 31 N N3 62T . . . E 2 -4.321 7.1 22.009 1 50.52 1 N3 62T 1001 B 1 HETATM 32 O O4 62T . . . E 2 -7.57 8.325 19.159 1 50.65 ? O4 62T 1001 B 1 HETATM 33 N N2 62T . . . E 2 -7.1 6.074 18.656 1 47.34 ? N2 62T 1001 B 1 HETATM 34 C C31 62T . . . E 2 -6.106 4.933 18.58 1 48.87 ? C31 62T 1001 B 1 HETATM 35 C C 62T . . . E 2 -7.422 3.987 16.669 1 47.18 ? C 62T 1001 B 1 HETATM 36 C C21 62T . . . E 2 -9.296 4.868 19.113 1 44.04 ? C21 62T 1001 B 1 HETATM 37 O O3 62T . . . E 2 -7.682 6.357 15.98 1 48.12 ? O3 62T 1001 B 1 HETATM 38 F F2 62T . . . E 2 -5.889 7.878 10.567 1 53.85 ? F2 62T 1001 B 1 HETATM 39 F F1 62T . . . E 2 -7.48 9.101 11.165 1 52.63 ? F1 62T 1001 B 1 HETATM 40 F F 62T . . . E 2 -5.644 9.275 12.166 1 50.41 ? F 62T 1001 B 1 HETATM 41 S S 62T . . . E 2 -7.68 5.878 12.142 1 45.35 ? S 62T 1001 B 1 HETATM 42 O O 62T . . . E 2 -10.017 3.788 15.884 1 47.56 ? O 62T 1001 B 1 HETATM 43 N N 62T . . . E 2 -10.741 5.976 15.926 1 48.14 ? N 62T 1001 B 1 HETATM 44 N N1 62T . . . E 2 -11.964 7.729 14.053 1 46.47 ? N1 62T 1001 B 1 HETATM 45 C C5 62T . . . E 2 -12.286 8.377 12.794 1 47.63 ? C5 62T 1001 B 1 HETATM 46 C C10 62T . . . E 2 -13.679 8.398 12.399 1 51.85 ? C10 62T 1001 B 1 HETATM 47 O O1 62T . . . E 2 -14.658 7.9 13.258 1 55.91 ? O1 62T 1001 B 1 HETATM 48 O O2 62T . . . E 2 -16.016 5.859 14.539 1 64.91 ? O2 62T 1001 B 1 HETATM 49 C C6 62T . . . E 2 -11.325 8.938 11.89 1 47.33 ? C6 62T 1001 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #