data_5HMJ
#
_model_server_result.job_id            vSBECPFcn8VH2vBbgTufoQ 
_model_server_result.datetime_utc      '2024-11-16 11:31:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hmj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":217}' 
#
_entry.id    5HMJ 
#
_exptl.entry_id    5HMJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HMJ 
_cell.length_a            78.58 
_cell.length_b            78.58 
_cell.length_c            37.29 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HMJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 R N N 
? 6 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 K PT PT . A PT 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc2 A O SER 60 A SER 60 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A O CYS 64 A CYS 64 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc4 A OG SER 72 A SER 72 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 H NA NA . A NA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc6 H NA NA . A NA 207 1_555 U O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc7 H NA NA . A NA 207 1_555 U O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 89 n n 
S C1 DMS sing 90 n n 
S C2 DMS sing 91 n n 
C1 H11 DMS sing 92 n n 
C1 H12 DMS sing 93 n n 
C1 H13 DMS sing 94 n n 
C2 H21 DMS sing 95 n n 
C2 H22 DMS sing 96 n n 
C2 H23 DMS sing 97 n n 
#
_atom_sites.entry_id                     5HMJ 
_atom_sites.fract_transf_matrix[1][1]    0.012726 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012726 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BR A 1 201 202 BR BR . 
C 2 BR A 1 202 204 BR BR . 
D 2 BR A 1 203 206 BR BR . 
E 2 BR A 1 204 207 BR BR . 
F 2 BR A 1 205 208 BR BR . 
G 2 BR A 1 206 209 BR BR . 
H 3 NA A 1 207 210 NA NA . 
I 2 BR A 1 208 217 BR BR . 
J 2 BR A 1 209 218 BR BR . 
K 4 PT A 1 210 219 PT PT . 
L 2 BR A 1 211 1 BR BR . 
M 2 BR A 1 212 1 BR BR . 
N 2 BR A 1 213 1 BR BR . 
O 2 BR A 1 214 1 BR BR . 
P 2 BR A 1 215 1 BR BR . 
Q 5 ACT A 1 216 1 ACT ACT . 
R 6 DMS A 1 217 211 DMS DMS . 
S 6 DMS A 1 218 214 DMS DMS . 
T 2 BR A 1 219 1 BR BR . 
U 7 HOH A 1 301 389 HOH HOH . 
U 7 HOH A 2 302 374 HOH HOH . 
U 7 HOH A 3 303 2 HOH HOH . 
U 7 HOH A 4 304 379 HOH HOH . 
U 7 HOH A 5 305 343 HOH HOH . 
U 7 HOH A 6 306 1 HOH HOH . 
U 7 HOH A 7 307 3 HOH HOH . 
U 7 HOH A 8 308 8 HOH HOH . 
U 7 HOH A 9 309 378 HOH HOH . 
U 7 HOH A 10 310 12 HOH HOH . 
U 7 HOH A 11 311 308 HOH HOH . 
U 7 HOH A 12 312 354 HOH HOH . 
U 7 HOH A 13 313 365 HOH HOH . 
U 7 HOH A 14 314 304 HOH HOH . 
U 7 HOH A 15 315 387 HOH HOH . 
U 7 HOH A 16 316 310 HOH HOH . 
U 7 HOH A 17 317 306 HOH HOH . 
U 7 HOH A 18 318 376 HOH HOH . 
U 7 HOH A 19 319 377 HOH HOH . 
U 7 HOH A 20 320 316 HOH HOH . 
U 7 HOH A 21 321 324 HOH HOH . 
U 7 HOH A 22 322 303 HOH HOH . 
U 7 HOH A 23 323 312 HOH HOH . 
U 7 HOH A 24 324 364 HOH HOH . 
U 7 HOH A 25 325 358 HOH HOH . 
U 7 HOH A 26 326 314 HOH HOH . 
U 7 HOH A 27 327 362 HOH HOH . 
U 7 HOH A 28 328 315 HOH HOH . 
U 7 HOH A 29 329 309 HOH HOH . 
U 7 HOH A 30 330 355 HOH HOH . 
U 7 HOH A 31 331 305 HOH HOH . 
U 7 HOH A 32 332 15 HOH HOH . 
U 7 HOH A 33 333 328 HOH HOH . 
U 7 HOH A 34 334 317 HOH HOH . 
U 7 HOH A 35 335 356 HOH HOH . 
U 7 HOH A 36 336 390 HOH HOH . 
U 7 HOH A 37 337 320 HOH HOH . 
U 7 HOH A 38 338 352 HOH HOH . 
U 7 HOH A 39 339 353 HOH HOH . 
U 7 HOH A 40 340 325 HOH HOH . 
U 7 HOH A 41 341 367 HOH HOH . 
U 7 HOH A 42 342 363 HOH HOH . 
U 7 HOH A 43 343 323 HOH HOH . 
U 7 HOH A 44 344 319 HOH HOH . 
U 7 HOH A 45 345 361 HOH HOH . 
U 7 HOH A 46 346 4 HOH HOH . 
U 7 HOH A 47 347 336 HOH HOH . 
U 7 HOH A 48 348 359 HOH HOH . 
U 7 HOH A 49 349 329 HOH HOH . 
U 7 HOH A 50 350 380 HOH HOH . 
U 7 HOH A 51 351 327 HOH HOH . 
U 7 HOH A 52 352 334 HOH HOH . 
U 7 HOH A 53 353 360 HOH HOH . 
U 7 HOH A 54 354 357 HOH HOH . 
U 7 HOH A 55 355 330 HOH HOH . 
U 7 HOH A 56 356 326 HOH HOH . 
U 7 HOH A 57 357 331 HOH HOH . 
U 7 HOH A 58 358 19 HOH HOH . 
U 7 HOH A 59 359 338 HOH HOH . 
U 7 HOH A 60 360 340 HOH HOH . 
U 7 HOH A 61 361 31 HOH HOH . 
U 7 HOH A 62 362 18 HOH HOH . 
U 7 HOH A 63 363 332 HOH HOH . 
U 7 HOH A 64 364 375 HOH HOH . 
U 7 HOH A 65 365 345 HOH HOH . 
U 7 HOH A 66 366 344 HOH HOH . 
U 7 HOH A 67 367 307 HOH HOH . 
U 7 HOH A 68 368 22 HOH HOH . 
U 7 HOH A 69 369 370 HOH HOH . 
U 7 HOH A 70 370 6 HOH HOH . 
U 7 HOH A 71 371 346 HOH HOH . 
U 7 HOH A 72 372 24 HOH HOH . 
U 7 HOH A 73 373 7 HOH HOH . 
U 7 HOH A 74 374 30 HOH HOH . 
U 7 HOH A 75 375 347 HOH HOH . 
U 7 HOH A 76 376 25 HOH HOH . 
U 7 HOH A 77 377 388 HOH HOH . 
U 7 HOH A 78 378 26 HOH HOH . 
U 7 HOH A 79 379 350 HOH HOH . 
U 7 HOH A 80 380 349 HOH HOH . 
U 7 HOH A 81 381 29 HOH HOH . 
U 7 HOH A 82 382 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . R 6 -22.229 3.287 -3.48 1 31.37 ? S DMS 217 A 1 
HETATM 2 O O DMS . . . R 6 -21.141 3.553 -2.498 1 23.49 ? O DMS 217 A 1 
HETATM 3 C C1 DMS . . . R 6 -23.382 2.043 -2.875 1 32.83 ? C1 DMS 217 A 1 
HETATM 4 C C2 DMS . . . R 6 -23.302 4.734 -3.594 1 31.96 ? C2 DMS 217 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#