data_5HMK
#
_model_server_result.job_id            vZfxclWwv14-PpT2B7ihKA 
_model_server_result.datetime_utc      '2024-11-22 04:29:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    5HMK 
#
_exptl.entry_id    5HMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              708.69 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HMK 
_cell.length_a            39.16 
_cell.length_b            39.51 
_cell.length_c            133.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C35 H38 F6 N4 O5' 
_chem_comp.formula_weight    708.69 
_chem_comp.id                62Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              {4-[2-(2-hydroxyethoxy)phenyl]piperazin-1-yl}[(2R,3S)-2-propyl-3-[4-(trifluoromethyl)phenoxy]-1-{[4-(trifluoromethyl)pyridin-3-yl]carbonyl}piperidin-3-yl]methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C16 62Q doub 1 n y 
N3 C15 62Q sing 2 n y 
C16 C17 62Q sing 3 n y 
C39 C38 62Q sing 4 n n 
C15 C14 62Q doub 5 n y 
C38 C37 62Q sing 6 n n 
C17 C18 62Q doub 7 n y 
C14 C18 62Q sing 8 n y 
C14 C13 62Q sing 9 n n 
C18 C36 62Q sing 10 n n 
C13 O3 62Q doub 11 n n 
C13 N1 62Q sing 12 n n 
C37 C4 62Q sing 13 n n 
N1 C3 62Q sing 14 n n 
N1 C4 62Q sing 15 n n 
C3 C2 62Q sing 16 n n 
C4 C5 62Q sing 17 n n 
C36 F4 62Q sing 18 n n 
C36 F6 62Q sing 19 n n 
C36 F5 62Q sing 20 n n 
C2 C1 62Q sing 21 n n 
C5 C1 62Q sing 22 n n 
C5 C6 62Q sing 23 n n 
C5 O2 62Q sing 24 n n 
C22 N2 62Q sing 25 n n 
C22 C21 62Q sing 26 n n 
C6 N2 62Q sing 27 n n 
C6 O1 62Q doub 28 n n 
O5 C33 62Q sing 29 n n 
N2 C19 62Q sing 30 n n 
O2 C7 62Q sing 31 n n 
C19 C20 62Q sing 32 n n 
C21 N4 62Q sing 33 n n 
C33 C32 62Q sing 34 n n 
C7 C8 62Q doub 35 n y 
C7 C12 62Q sing 36 n y 
C8 C9 62Q sing 37 n y 
N4 C20 62Q sing 38 n n 
N4 C23 62Q sing 39 n n 
C32 O4 62Q sing 40 n n 
C12 C11 62Q doub 41 n y 
C9 C10 62Q doub 42 n y 
O4 C28 62Q sing 43 n n 
C23 C28 62Q doub 44 n y 
C23 C24 62Q sing 45 n y 
C11 C10 62Q sing 46 n y 
C28 C27 62Q sing 47 n y 
C24 C25 62Q doub 48 n y 
C10 C35 62Q sing 49 n n 
C27 C26 62Q doub 50 n y 
C25 C26 62Q sing 51 n y 
C35 F2 62Q sing 52 n n 
C35 F1 62Q sing 53 n n 
C35 F3 62Q sing 54 n n 
C1 H1 62Q sing 55 n n 
C1 H2 62Q sing 56 n n 
C2 H3 62Q sing 57 n n 
C2 H4 62Q sing 58 n n 
C3 H5 62Q sing 59 n n 
C3 H6 62Q sing 60 n n 
C4 H7 62Q sing 61 n n 
C8 H8 62Q sing 62 n n 
C9 H9 62Q sing 63 n n 
C11 H10 62Q sing 64 n n 
C12 H11 62Q sing 65 n n 
C15 H12 62Q sing 66 n n 
C16 H13 62Q sing 67 n n 
C17 H14 62Q sing 68 n n 
C19 H15 62Q sing 69 n n 
C19 H16 62Q sing 70 n n 
C20 H17 62Q sing 71 n n 
C20 H18 62Q sing 72 n n 
C21 H19 62Q sing 73 n n 
C21 H20 62Q sing 74 n n 
C22 H21 62Q sing 75 n n 
C22 H22 62Q sing 76 n n 
C24 H23 62Q sing 77 n n 
C25 H24 62Q sing 78 n n 
C26 H25 62Q sing 79 n n 
C27 H26 62Q sing 80 n n 
C32 H27 62Q sing 81 n n 
C32 H28 62Q sing 82 n n 
C33 H29 62Q sing 83 n n 
C33 H30 62Q sing 84 n n 
O5 H31 62Q sing 85 n n 
C37 H32 62Q sing 86 n n 
C37 H33 62Q sing 87 n n 
C38 H34 62Q sing 88 n n 
C38 H35 62Q sing 89 n n 
C39 H36 62Q sing 90 n n 
C39 H37 62Q sing 91 n n 
C39 H38 62Q sing 92 n n 
#
_atom_sites.entry_id                     5HMK 
_atom_sites.fract_transf_matrix[1][1]    0.025536 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007487 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 62Q A 1 1001 1001 62Q SCH . 
D 2 62Q B 1 1001 1001 62Q SCH . 
E 3 HOH A 1 1101 3105 HOH HOH . 
E 3 HOH A 2 1102 4 HOH HOH . 
E 3 HOH A 3 1103 3101 HOH HOH . 
E 3 HOH A 4 1104 20 HOH HOH . 
E 3 HOH A 5 1105 3103 HOH HOH . 
E 3 HOH A 6 1106 3115 HOH HOH . 
E 3 HOH A 7 1107 8 HOH HOH . 
E 3 HOH A 8 1108 3108 HOH HOH . 
E 3 HOH A 9 1109 3104 HOH HOH . 
E 3 HOH A 10 1110 18 HOH HOH . 
E 3 HOH A 11 1111 15 HOH HOH . 
E 3 HOH A 12 1112 13 HOH HOH . 
E 3 HOH A 13 1113 12 HOH HOH . 
E 3 HOH A 14 1114 19 HOH HOH . 
E 3 HOH A 15 1115 28 HOH HOH . 
E 3 HOH A 16 1116 32 HOH HOH . 
E 3 HOH A 17 1117 39 HOH HOH . 
E 3 HOH A 18 1118 30 HOH HOH . 
F 3 HOH B 1 1101 3106 HOH HOH . 
F 3 HOH B 2 1102 3114 HOH HOH . 
F 3 HOH B 3 1103 3119 HOH HOH . 
F 3 HOH B 4 1104 23 HOH HOH . 
F 3 HOH B 5 1105 29 HOH HOH . 
F 3 HOH B 6 1106 3112 HOH HOH . 
F 3 HOH B 7 1107 25 HOH HOH . 
F 3 HOH B 8 1108 3121 HOH HOH . 
F 3 HOH B 9 1109 33 HOH HOH . 
F 3 HOH B 10 1110 3118 HOH HOH . 
F 3 HOH B 11 1111 3111 HOH HOH . 
F 3 HOH B 12 1112 22 HOH HOH . 
F 3 HOH B 13 1113 3107 HOH HOH . 
F 3 HOH B 14 1114 3122 HOH HOH . 
F 3 HOH B 15 1115 3120 HOH HOH . 
F 3 HOH B 16 1116 17 HOH HOH . 
F 3 HOH B 17 1117 2 HOH HOH . 
F 3 HOH B 18 1118 16 HOH HOH . 
F 3 HOH B 19 1119 3125 HOH HOH . 
F 3 HOH B 20 1120 11 HOH HOH . 
F 3 HOH B 21 1121 3110 HOH HOH . 
F 3 HOH B 22 1122 5 HOH HOH . 
F 3 HOH B 23 1123 3113 HOH HOH . 
F 3 HOH B 24 1124 21 HOH HOH . 
F 3 HOH B 25 1125 3 HOH HOH . 
F 3 HOH B 26 1126 1 HOH HOH . 
F 3 HOH B 27 1127 3116 HOH HOH . 
F 3 HOH B 28 1128 3124 HOH HOH . 
F 3 HOH B 29 1129 3123 HOH HOH . 
F 3 HOH B 30 1130 9 HOH HOH . 
F 3 HOH B 31 1131 26 HOH HOH . 
F 3 HOH B 32 1132 6 HOH HOH . 
F 3 HOH B 33 1133 31 HOH HOH . 
F 3 HOH B 34 1134 36 HOH HOH . 
F 3 HOH B 35 1135 24 HOH HOH . 
F 3 HOH B 36 1136 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F1 62Q . . . D 2 7.815 -6.362 10.171 1 44.03 ? F1 62Q 1001 B 1 
HETATM 2 F F2 62Q . . . D 2 9.38 -7.779 10.626 1 45.06 ? F2 62Q 1001 B 1 
HETATM 3 F F3 62Q . . . D 2 9.811 -5.968 9.598 1 44.01 ? F3 62Q 1001 B 1 
HETATM 4 F F4 62Q . . . D 2 7.913 -6.984 18.134 1 52 ? F4 62Q 1001 B 1 
HETATM 5 F F5 62Q . . . D 2 7.02 -5.381 17.204 1 48.22 ? F5 62Q 1001 B 1 
HETATM 6 F F6 62Q . . . D 2 5.677 -6.768 18.067 1 52 ? F6 62Q 1001 B 1 
HETATM 7 C C1 62Q . . . D 2 9.592 -1.98 15.773 1 47.64 ? C1 62Q 1001 B 1 
HETATM 8 C C2 62Q . . . D 2 8.3 -2.017 16.598 1 48.02 ? C2 62Q 1001 B 1 
HETATM 9 C C3 62Q . . . D 2 8.571 -2.288 18.09 1 47.81 ? C3 62Q 1001 B 1 
HETATM 10 N N1 62Q . . . D 2 9.589 -3.371 18.331 1 44.97 ? N1 62Q 1001 B 1 
HETATM 11 C C4 62Q . . . D 2 10.897 -3.146 17.701 1 44.54 ? C4 62Q 1001 B 1 
HETATM 12 C C5 62Q . . . D 2 10.687 -3.041 16.135 1 47.45 ? C5 62Q 1001 B 1 
HETATM 13 C C6 62Q . . . D 2 12.037 -2.733 15.445 1 47.4 ? C6 62Q 1001 B 1 
HETATM 14 N N2 62Q . . . D 2 13.027 -3.683 15.413 1 47.18 ? N2 62Q 1001 B 1 
HETATM 15 O O1 62Q . . . D 2 12.205 -1.624 14.933 1 48.72 ? O1 62Q 1001 B 1 
HETATM 16 O O2 62Q . . . D 2 10.053 -4.258 15.731 1 47.96 ? O2 62Q 1001 B 1 
HETATM 17 C C7 62Q . . . D 2 9.874 -4.701 14.468 1 44.21 ? C7 62Q 1001 B 1 
HETATM 18 C C8 62Q . . . D 2 9.247 -5.949 14.415 1 42.77 ? C8 62Q 1001 B 1 
HETATM 19 C C9 62Q . . . D 2 8.987 -6.493 13.15 1 41.29 ? C9 62Q 1001 B 1 
HETATM 20 C C10 62Q . . . D 2 9.343 -5.8 11.957 1 42.49 ? C10 62Q 1001 B 1 
HETATM 21 C C11 62Q . . . D 2 9.973 -4.512 12.016 1 37.6 ? C11 62Q 1001 B 1 
HETATM 22 C C12 62Q . . . D 2 10.196 -3.983 13.264 1 40.31 ? C12 62Q 1001 B 1 
HETATM 23 C C13 62Q . . . D 2 9.315 -4.475 19.085 1 48.63 ? C13 62Q 1001 B 1 
HETATM 24 O O3 62Q . . . D 2 10.021 -5.492 19.186 1 52.94 ? O3 62Q 1001 B 1 
HETATM 25 C C14 62Q . . . D 2 8.068 -4.525 19.903 1 49.38 ? C14 62Q 1001 B 1 
HETATM 26 C C15 62Q . . . D 2 8.041 -3.785 21.116 1 49.09 ? C15 62Q 1001 B 1 
HETATM 27 N N3 62Q . . . D 2 6.971 -3.814 21.963 1 50.93 ? N3 62Q 1001 B 1 
HETATM 28 C C16 62Q . . . D 2 5.868 -4.554 21.65 1 50.29 ? C16 62Q 1001 B 1 
HETATM 29 C C17 62Q . . . D 2 5.8 -5.301 20.459 1 49.03 ? C17 62Q 1001 B 1 
HETATM 30 C C18 62Q . . . D 2 6.919 -5.323 19.569 1 49.44 ? C18 62Q 1001 B 1 
HETATM 31 C C19 62Q . . . D 2 14.3 -3.351 14.713 1 44.68 ? C19 62Q 1001 B 1 
HETATM 32 C C20 62Q . . . D 2 14.191 -4.202 13.437 1 42.85 ? C20 62Q 1001 B 1 
HETATM 33 N N4 62Q . . . D 2 14.31 -5.659 13.804 1 42.87 ? N4 62Q 1001 B 1 
HETATM 34 C C21 62Q . . . D 2 13.162 -6.049 14.661 1 43.61 ? C21 62Q 1001 B 1 
HETATM 35 C C22 62Q . . . D 2 13.017 -5.106 15.946 1 45.86 ? C22 62Q 1001 B 1 
HETATM 36 C C23 62Q . . . D 2 14.814 -6.412 12.644 1 43.61 ? C23 62Q 1001 B 1 
HETATM 37 C C24 62Q . . . D 2 13.949 -7.215 11.889 1 40.17 ? C24 62Q 1001 B 1 
HETATM 38 C C25 62Q . . . D 2 14.354 -7.903 10.746 1 39.88 ? C25 62Q 1001 B 1 
HETATM 39 C C26 62Q . . . D 2 15.653 -7.759 10.318 1 43.51 ? C26 62Q 1001 B 1 
HETATM 40 C C27 62Q . . . D 2 16.594 -6.958 11.025 1 46.06 ? C27 62Q 1001 B 1 
HETATM 41 C C28 62Q . . . D 2 16.184 -6.248 12.204 1 46.21 ? C28 62Q 1001 B 1 
HETATM 42 O O4 62Q . . . D 2 17.089 -5.466 12.898 1 48.41 ? O4 62Q 1001 B 1 
HETATM 43 C C32 62Q . . . D 2 17.408 -4.106 12.48 1 58.51 ? C32 62Q 1001 B 1 
HETATM 44 C C33 62Q . . . D 2 18.357 -3.294 13.42 1 66.9 ? C33 62Q 1001 B 1 
HETATM 45 O O5 62Q . . . D 2 18.171 -1.837 13.475 1 71.81 ? O5 62Q 1001 B 1 
HETATM 46 C C35 62Q . . . D 2 9.069 -6.476 10.587 1 43.84 ? C35 62Q 1001 B 1 
HETATM 47 C C36 62Q . . . D 2 6.867 -6.137 18.278 1 50.1 ? C36 62Q 1001 B 1 
HETATM 48 C C37 62Q . . . D 2 11.649 -1.95 18.385 1 45.04 ? C37 62Q 1001 B 1 
HETATM 49 C C38 62Q . . . D 2 12.032 -2.24 19.88 1 48.08 ? C38 62Q 1001 B 1 
HETATM 50 C C39 62Q . . . D 2 12.917 -3.482 20.128 1 46.02 ? C39 62Q 1001 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           50 
#