data_5HMR # _model_server_result.job_id bMiEG59GbqH5Wdecnt-FRw _model_server_result.datetime_utc '2025-03-20 06:16:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5HMR # _exptl.entry_id 5HMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.248 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1,2,3-thiadiazol-5-yl)-3-[3-(trifluoromethoxy)phenyl]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HMR _cell.length_a 79.72 _cell.length_b 79.72 _cell.length_c 203.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND1 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 100 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8M _struct_conn.ptnr2_label_comp_id FAD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FAD _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.438 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H7 F3 N4 O2 S' _chem_comp.formula_weight 304.248 _chem_comp.id FDZ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1,2,3-thiadiazol-5-yl)-3-[3-(trifluoromethoxy)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 FDZ doub 174 n y C01 C06 FDZ sing 175 n y C02 C03 FDZ sing 176 n y C03 C04 FDZ doub 177 n y C03 N12 FDZ sing 178 n n C04 C05 FDZ sing 179 n y C05 C06 FDZ doub 180 n y C05 O07 FDZ sing 181 n n O07 C08 FDZ sing 182 n n C08 F09 FDZ sing 183 n n C08 F10 FDZ sing 184 n n C08 F11 FDZ sing 185 n n N12 C13 FDZ sing 186 n n C13 O14 FDZ doub 187 n n C13 N15 FDZ sing 188 n n N15 C16 FDZ sing 189 n n C16 C17 FDZ doub 190 n y C16 S20 FDZ sing 191 n y C17 N18 FDZ sing 192 n y N18 N19 FDZ doub 193 n y N19 S20 FDZ sing 194 n y C01 H1 FDZ sing 195 n n C02 H2 FDZ sing 196 n n C04 H3 FDZ sing 197 n n C06 H4 FDZ sing 198 n n N12 H5 FDZ sing 199 n n C17 H6 FDZ sing 200 n n N15 H10 FDZ sing 201 n n # _atom_sites.entry_id 5HMR _atom_sites.fract_transf_matrix[1][1] 0.012544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 FDZ A 1 602 1 FDZ FDZ . D 4 HOH A 1 701 77 HOH HOH . D 4 HOH A 2 702 93 HOH HOH . D 4 HOH A 3 703 36 HOH HOH . D 4 HOH A 4 704 53 HOH HOH . D 4 HOH A 5 705 91 HOH HOH . D 4 HOH A 6 706 59 HOH HOH . D 4 HOH A 7 707 90 HOH HOH . D 4 HOH A 8 708 76 HOH HOH . D 4 HOH A 9 709 73 HOH HOH . D 4 HOH A 10 710 32 HOH HOH . D 4 HOH A 11 711 139 HOH HOH . D 4 HOH A 12 712 135 HOH HOH . D 4 HOH A 13 713 123 HOH HOH . D 4 HOH A 14 714 18 HOH HOH . D 4 HOH A 15 715 130 HOH HOH . D 4 HOH A 16 716 28 HOH HOH . D 4 HOH A 17 717 117 HOH HOH . D 4 HOH A 18 718 26 HOH HOH . D 4 HOH A 19 719 167 HOH HOH . D 4 HOH A 20 720 50 HOH HOH . D 4 HOH A 21 721 68 HOH HOH . D 4 HOH A 22 722 57 HOH HOH . D 4 HOH A 23 723 21 HOH HOH . D 4 HOH A 24 724 95 HOH HOH . D 4 HOH A 25 725 110 HOH HOH . D 4 HOH A 26 726 148 HOH HOH . D 4 HOH A 27 727 78 HOH HOH . D 4 HOH A 28 728 204 HOH HOH . D 4 HOH A 29 729 74 HOH HOH . D 4 HOH A 30 730 4 HOH HOH . D 4 HOH A 31 731 94 HOH HOH . D 4 HOH A 32 732 17 HOH HOH . D 4 HOH A 33 733 163 HOH HOH . D 4 HOH A 34 734 100 HOH HOH . D 4 HOH A 35 735 39 HOH HOH . D 4 HOH A 36 736 115 HOH HOH . D 4 HOH A 37 737 44 HOH HOH . D 4 HOH A 38 738 56 HOH HOH . D 4 HOH A 39 739 51 HOH HOH . D 4 HOH A 40 740 105 HOH HOH . D 4 HOH A 41 741 55 HOH HOH . D 4 HOH A 42 742 67 HOH HOH . D 4 HOH A 43 743 172 HOH HOH . D 4 HOH A 44 744 129 HOH HOH . D 4 HOH A 45 745 30 HOH HOH . D 4 HOH A 46 746 113 HOH HOH . D 4 HOH A 47 747 82 HOH HOH . D 4 HOH A 48 748 203 HOH HOH . D 4 HOH A 49 749 48 HOH HOH . D 4 HOH A 50 750 182 HOH HOH . D 4 HOH A 51 751 70 HOH HOH . D 4 HOH A 52 752 42 HOH HOH . D 4 HOH A 53 753 19 HOH HOH . D 4 HOH A 54 754 10 HOH HOH . D 4 HOH A 55 755 66 HOH HOH . D 4 HOH A 56 756 199 HOH HOH . D 4 HOH A 57 757 171 HOH HOH . D 4 HOH A 58 758 75 HOH HOH . D 4 HOH A 59 759 14 HOH HOH . D 4 HOH A 60 760 173 HOH HOH . D 4 HOH A 61 761 46 HOH HOH . D 4 HOH A 62 762 200 HOH HOH . D 4 HOH A 63 763 31 HOH HOH . D 4 HOH A 64 764 201 HOH HOH . D 4 HOH A 65 765 23 HOH HOH . D 4 HOH A 66 766 16 HOH HOH . D 4 HOH A 67 767 22 HOH HOH . D 4 HOH A 68 768 81 HOH HOH . D 4 HOH A 69 769 184 HOH HOH . D 4 HOH A 70 770 25 HOH HOH . D 4 HOH A 71 771 45 HOH HOH . D 4 HOH A 72 772 80 HOH HOH . D 4 HOH A 73 773 13 HOH HOH . D 4 HOH A 74 774 58 HOH HOH . D 4 HOH A 75 775 109 HOH HOH . D 4 HOH A 76 776 158 HOH HOH . D 4 HOH A 77 777 38 HOH HOH . D 4 HOH A 78 778 88 HOH HOH . D 4 HOH A 79 779 120 HOH HOH . D 4 HOH A 80 780 85 HOH HOH . D 4 HOH A 81 781 140 HOH HOH . D 4 HOH A 82 782 54 HOH HOH . D 4 HOH A 83 783 34 HOH HOH . D 4 HOH A 84 784 49 HOH HOH . D 4 HOH A 85 785 197 HOH HOH . D 4 HOH A 86 786 132 HOH HOH . D 4 HOH A 87 787 8 HOH HOH . D 4 HOH A 88 788 194 HOH HOH . D 4 HOH A 89 789 72 HOH HOH . D 4 HOH A 90 790 64 HOH HOH . D 4 HOH A 91 791 83 HOH HOH . D 4 HOH A 92 792 20 HOH HOH . D 4 HOH A 93 793 69 HOH HOH . D 4 HOH A 94 794 52 HOH HOH . D 4 HOH A 95 795 92 HOH HOH . D 4 HOH A 96 796 150 HOH HOH . D 4 HOH A 97 797 60 HOH HOH . D 4 HOH A 98 798 9 HOH HOH . D 4 HOH A 99 799 15 HOH HOH . D 4 HOH A 100 800 40 HOH HOH . D 4 HOH A 101 801 134 HOH HOH . D 4 HOH A 102 802 131 HOH HOH . D 4 HOH A 103 803 146 HOH HOH . D 4 HOH A 104 804 35 HOH HOH . D 4 HOH A 105 805 155 HOH HOH . D 4 HOH A 106 806 43 HOH HOH . D 4 HOH A 107 807 71 HOH HOH . D 4 HOH A 108 808 63 HOH HOH . D 4 HOH A 109 809 149 HOH HOH . D 4 HOH A 110 810 111 HOH HOH . D 4 HOH A 111 811 104 HOH HOH . D 4 HOH A 112 812 174 HOH HOH . D 4 HOH A 113 813 121 HOH HOH . D 4 HOH A 114 814 3 HOH HOH . D 4 HOH A 115 815 65 HOH HOH . D 4 HOH A 116 816 166 HOH HOH . D 4 HOH A 117 817 125 HOH HOH . D 4 HOH A 118 818 157 HOH HOH . D 4 HOH A 119 819 124 HOH HOH . D 4 HOH A 120 820 11 HOH HOH . D 4 HOH A 121 821 62 HOH HOH . D 4 HOH A 122 822 106 HOH HOH . D 4 HOH A 123 823 127 HOH HOH . D 4 HOH A 124 824 89 HOH HOH . D 4 HOH A 125 825 103 HOH HOH . D 4 HOH A 126 826 119 HOH HOH . D 4 HOH A 127 827 147 HOH HOH . D 4 HOH A 128 828 138 HOH HOH . D 4 HOH A 129 829 6 HOH HOH . D 4 HOH A 130 830 107 HOH HOH . D 4 HOH A 131 831 112 HOH HOH . D 4 HOH A 132 832 27 HOH HOH . D 4 HOH A 133 833 161 HOH HOH . D 4 HOH A 134 834 162 HOH HOH . D 4 HOH A 135 835 122 HOH HOH . D 4 HOH A 136 836 142 HOH HOH . D 4 HOH A 137 837 5 HOH HOH . D 4 HOH A 138 838 24 HOH HOH . D 4 HOH A 139 839 7 HOH HOH . D 4 HOH A 140 840 175 HOH HOH . D 4 HOH A 141 841 153 HOH HOH . D 4 HOH A 142 842 84 HOH HOH . D 4 HOH A 143 843 101 HOH HOH . D 4 HOH A 144 844 97 HOH HOH . D 4 HOH A 145 845 156 HOH HOH . D 4 HOH A 146 846 170 HOH HOH . D 4 HOH A 147 847 37 HOH HOH . D 4 HOH A 148 848 29 HOH HOH . D 4 HOH A 149 849 79 HOH HOH . D 4 HOH A 150 850 187 HOH HOH . D 4 HOH A 151 851 133 HOH HOH . D 4 HOH A 152 852 41 HOH HOH . D 4 HOH A 153 853 164 HOH HOH . D 4 HOH A 154 854 143 HOH HOH . D 4 HOH A 155 855 152 HOH HOH . D 4 HOH A 156 856 137 HOH HOH . D 4 HOH A 157 857 141 HOH HOH . D 4 HOH A 158 858 151 HOH HOH . D 4 HOH A 159 859 116 HOH HOH . D 4 HOH A 160 860 165 HOH HOH . D 4 HOH A 161 861 47 HOH HOH . D 4 HOH A 162 862 185 HOH HOH . D 4 HOH A 163 863 128 HOH HOH . D 4 HOH A 164 864 144 HOH HOH . D 4 HOH A 165 865 196 HOH HOH . D 4 HOH A 166 866 177 HOH HOH . D 4 HOH A 167 867 2 HOH HOH . D 4 HOH A 168 868 169 HOH HOH . D 4 HOH A 169 869 183 HOH HOH . D 4 HOH A 170 870 96 HOH HOH . D 4 HOH A 171 871 195 HOH HOH . D 4 HOH A 172 872 160 HOH HOH . D 4 HOH A 173 873 192 HOH HOH . D 4 HOH A 174 874 176 HOH HOH . D 4 HOH A 175 875 186 HOH HOH . D 4 HOH A 176 876 145 HOH HOH . D 4 HOH A 177 877 136 HOH HOH . D 4 HOH A 178 878 1 HOH HOH . D 4 HOH A 179 879 126 HOH HOH . D 4 HOH A 180 880 191 HOH HOH . D 4 HOH A 181 881 108 HOH HOH . D 4 HOH A 182 882 33 HOH HOH . D 4 HOH A 183 883 12 HOH HOH . D 4 HOH A 184 884 181 HOH HOH . D 4 HOH A 185 885 98 HOH HOH . D 4 HOH A 186 886 159 HOH HOH . D 4 HOH A 187 887 198 HOH HOH . D 4 HOH A 188 888 102 HOH HOH . D 4 HOH A 189 889 87 HOH HOH . D 4 HOH A 190 890 118 HOH HOH . D 4 HOH A 191 891 114 HOH HOH . D 4 HOH A 192 892 190 HOH HOH . D 4 HOH A 193 893 61 HOH HOH . D 4 HOH A 194 894 154 HOH HOH . D 4 HOH A 195 895 189 HOH HOH . D 4 HOH A 196 896 99 HOH HOH . D 4 HOH A 197 897 188 HOH HOH . D 4 HOH A 198 898 178 HOH HOH . D 4 HOH A 199 899 179 HOH HOH . D 4 HOH A 200 900 180 HOH HOH . D 4 HOH A 201 901 193 HOH HOH . D 4 HOH A 202 902 202 HOH HOH . D 4 HOH A 203 903 86 HOH HOH . D 4 HOH A 204 904 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 FDZ . . . C 3 -9.866 19.029 -14.005 1 41.96 ? C01 FDZ 602 A 1 HETATM 2 C C02 FDZ . . . C 3 -8.556 19.21 -14.456 1 41.05 ? C02 FDZ 602 A 1 HETATM 3 C C03 FDZ . . . C 3 -8.016 20.491 -14.55 1 37.42 ? C03 FDZ 602 A 1 HETATM 4 C C04 FDZ . . . C 3 -8.775 21.594 -14.194 1 42.67 ? C04 FDZ 602 A 1 HETATM 5 C C05 FDZ . . . C 3 -10.077 21.433 -13.745 1 48 ? C05 FDZ 602 A 1 HETATM 6 C C06 FDZ . . . C 3 -10.631 20.144 -13.679 1 44.11 ? C06 FDZ 602 A 1 HETATM 7 O O07 FDZ . . . C 3 -10.796 22.631 -13.519 1 55.22 ? O07 FDZ 602 A 1 HETATM 8 C C08 FDZ . . . C 3 -11.778 22.671 -12.524 1 60.79 ? C08 FDZ 602 A 1 HETATM 9 F F09 FDZ . . . C 3 -12.844 21.949 -12.907 1 64.04 ? F09 FDZ 602 A 1 HETATM 10 F F10 FDZ . . . C 3 -12.122 23.95 -12.365 1 59.44 ? F10 FDZ 602 A 1 HETATM 11 F F11 FDZ . . . C 3 -11.272 22.202 -11.381 1 63.88 ? F11 FDZ 602 A 1 HETATM 12 N N12 FDZ . . . C 3 -6.662 20.617 -14.936 1 35.14 ? N12 FDZ 602 A 1 HETATM 13 C C13 FDZ . . . C 3 -5.842 21.75 -14.707 1 34.6 ? C13 FDZ 602 A 1 HETATM 14 O O14 FDZ . . . C 3 -6.279 22.779 -14.204 1 36.28 ? O14 FDZ 602 A 1 HETATM 15 N N15 FDZ . . . C 3 -4.478 21.643 -15.047 1 36.7 ? N15 FDZ 602 A 1 HETATM 16 C C16 FDZ . . . C 3 -3.608 22.747 -14.826 1 38.51 ? C16 FDZ 602 A 1 HETATM 17 C C17 FDZ . . . C 3 -2.251 22.839 -15.109 1 39.23 ? C17 FDZ 602 A 1 HETATM 18 N N18 FDZ . . . C 3 -1.731 24.027 -14.797 1 40.09 ? N18 FDZ 602 A 1 HETATM 19 N N19 FDZ . . . C 3 -2.554 24.943 -14.263 1 41.98 ? N19 FDZ 602 A 1 HETATM 20 S S20 FDZ . . . C 3 -4.004 24.264 -14.138 1 41.86 ? S20 FDZ 602 A 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 1363 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #