data_5HMV
#
_model_server_result.job_id            WSj5Fzf-VDgBdtPOjBxPFw 
_model_server_result.datetime_utc      '2024-11-16 04:32:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":206}' 
#
_entry.id    5HMV 
#
_exptl.entry_id    5HMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         89.08 
_cell.angle_beta          72 
_cell.angle_gamma         67.81 
_cell.entry_id            5HMV 
_cell.length_a            26.998 
_cell.length_b            31.807 
_cell.length_c            34.072 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A N LYS 1 A LYS 1 1_555 M PT PT . A PT 212 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 A N LYS 1 A LYS 1 1_555 M PT PT . A PT 212 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 H PT PT . A PT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc4 A NE2 HIS 15 A HIS 15 1_555 J PT PT . A PT 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc5 A ND1 HIS 15 A HIS 15 1_555 L PT PT . A PT 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc6 A NE2 HIS 15 A HIS 15 1_555 L PT PT . A PT 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc7 A NE2 HIS 15 A HIS 15 1_555 S PT PT . A PT 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 246 n n 
N O2 NO3 sing 247 n n 
N O3 NO3 sing 248 n n 
#
_atom_sites.entry_id                     5HMV 
_atom_sites.fract_transf_matrix[1][1]    0.03704 
_atom_sites.fract_transf_matrix[1][2]    -0.015107 
_atom_sites.fract_transf_matrix[1][3]    -0.013851 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.033954 
_atom_sites.fract_transf_matrix[2][3]    0.003909 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 201 203 DMS DMS . 
C 2 DMS A 1 202 206 DMS DMS . 
D 3 NO3 A 1 203 211 NO3 NO3 . 
E 3 NO3 A 1 204 212 NO3 NO3 . 
F 3 NO3 A 1 205 216 NO3 NO3 . 
G 3 NO3 A 1 206 217 NO3 NO3 . 
H 4 PT A 1 207 3 PT PT . 
I 4 PT A 1 208 4 PT PT . 
J 4 PT A 1 209 1 PT PT . 
K 4 PT A 1 210 1 PT PT . 
L 4 PT A 1 211 2 PT PT . 
M 4 PT A 1 212 1 PT PT . 
N 2 DMS A 1 213 1 DMS DMS . 
O 3 NO3 A 1 214 1 NO3 NO3 . 
P 3 NO3 A 1 215 2 NO3 NO3 . 
Q 3 NO3 A 1 216 3 NO3 NO3 . 
R 5 CL A 1 217 1 CL CL . 
S 4 PT A 1 218 2 PT PT . 
T 5 CL A 1 219 1 CL CL . 
U 6 HOH A 1 301 439 HOH HOH . 
U 6 HOH A 2 302 16 HOH HOH . 
U 6 HOH A 3 303 371 HOH HOH . 
U 6 HOH A 4 304 329 HOH HOH . 
U 6 HOH A 5 305 386 HOH HOH . 
U 6 HOH A 6 306 422 HOH HOH . 
U 6 HOH A 7 307 1 HOH HOH . 
U 6 HOH A 8 308 357 HOH HOH . 
U 6 HOH A 9 309 20 HOH HOH . 
U 6 HOH A 10 310 379 HOH HOH . 
U 6 HOH A 11 311 366 HOH HOH . 
U 6 HOH A 12 312 303 HOH HOH . 
U 6 HOH A 13 313 369 HOH HOH . 
U 6 HOH A 14 314 2 HOH HOH . 
U 6 HOH A 15 315 362 HOH HOH . 
U 6 HOH A 16 316 401 HOH HOH . 
U 6 HOH A 17 317 387 HOH HOH . 
U 6 HOH A 18 318 380 HOH HOH . 
U 6 HOH A 19 319 306 HOH HOH . 
U 6 HOH A 20 320 441 HOH HOH . 
U 6 HOH A 21 321 10 HOH HOH . 
U 6 HOH A 22 322 442 HOH HOH . 
U 6 HOH A 23 323 432 HOH HOH . 
U 6 HOH A 24 324 383 HOH HOH . 
U 6 HOH A 25 325 19 HOH HOH . 
U 6 HOH A 26 326 403 HOH HOH . 
U 6 HOH A 27 327 431 HOH HOH . 
U 6 HOH A 28 328 302 HOH HOH . 
U 6 HOH A 29 329 322 HOH HOH . 
U 6 HOH A 30 330 314 HOH HOH . 
U 6 HOH A 31 331 361 HOH HOH . 
U 6 HOH A 32 332 417 HOH HOH . 
U 6 HOH A 33 333 328 HOH HOH . 
U 6 HOH A 34 334 3 HOH HOH . 
U 6 HOH A 35 335 373 HOH HOH . 
U 6 HOH A 36 336 309 HOH HOH . 
U 6 HOH A 37 337 388 HOH HOH . 
U 6 HOH A 38 338 400 HOH HOH . 
U 6 HOH A 39 339 12 HOH HOH . 
U 6 HOH A 40 340 333 HOH HOH . 
U 6 HOH A 41 341 308 HOH HOH . 
U 6 HOH A 42 342 367 HOH HOH . 
U 6 HOH A 43 343 394 HOH HOH . 
U 6 HOH A 44 344 316 HOH HOH . 
U 6 HOH A 45 345 440 HOH HOH . 
U 6 HOH A 46 346 389 HOH HOH . 
U 6 HOH A 47 347 370 HOH HOH . 
U 6 HOH A 48 348 11 HOH HOH . 
U 6 HOH A 49 349 305 HOH HOH . 
U 6 HOH A 50 350 363 HOH HOH . 
U 6 HOH A 51 351 14 HOH HOH . 
U 6 HOH A 52 352 368 HOH HOH . 
U 6 HOH A 53 353 384 HOH HOH . 
U 6 HOH A 54 354 325 HOH HOH . 
U 6 HOH A 55 355 307 HOH HOH . 
U 6 HOH A 56 356 364 HOH HOH . 
U 6 HOH A 57 357 4 HOH HOH . 
U 6 HOH A 58 358 359 HOH HOH . 
U 6 HOH A 59 359 319 HOH HOH . 
U 6 HOH A 60 360 375 HOH HOH . 
U 6 HOH A 61 361 5 HOH HOH . 
U 6 HOH A 62 362 358 HOH HOH . 
U 6 HOH A 63 363 7 HOH HOH . 
U 6 HOH A 64 364 377 HOH HOH . 
U 6 HOH A 65 365 6 HOH HOH . 
U 6 HOH A 66 366 311 HOH HOH . 
U 6 HOH A 67 367 355 HOH HOH . 
U 6 HOH A 68 368 381 HOH HOH . 
U 6 HOH A 69 369 423 HOH HOH . 
U 6 HOH A 70 370 360 HOH HOH . 
U 6 HOH A 71 371 433 HOH HOH . 
U 6 HOH A 72 372 391 HOH HOH . 
U 6 HOH A 73 373 424 HOH HOH . 
U 6 HOH A 74 374 304 HOH HOH . 
U 6 HOH A 75 375 324 HOH HOH . 
U 6 HOH A 76 376 438 HOH HOH . 
U 6 HOH A 77 377 385 HOH HOH . 
U 6 HOH A 78 378 408 HOH HOH . 
U 6 HOH A 79 379 326 HOH HOH . 
U 6 HOH A 80 380 312 HOH HOH . 
U 6 HOH A 81 381 310 HOH HOH . 
U 6 HOH A 82 382 434 HOH HOH . 
U 6 HOH A 83 383 406 HOH HOH . 
U 6 HOH A 84 384 372 HOH HOH . 
U 6 HOH A 85 385 318 HOH HOH . 
U 6 HOH A 86 386 330 HOH HOH . 
U 6 HOH A 87 387 315 HOH HOH . 
U 6 HOH A 88 388 356 HOH HOH . 
U 6 HOH A 89 389 365 HOH HOH . 
U 6 HOH A 90 390 21 HOH HOH . 
U 6 HOH A 91 391 17 HOH HOH . 
U 6 HOH A 92 392 8 HOH HOH . 
U 6 HOH A 93 393 15 HOH HOH . 
U 6 HOH A 94 394 392 HOH HOH . 
U 6 HOH A 95 395 378 HOH HOH . 
U 6 HOH A 96 396 427 HOH HOH . 
U 6 HOH A 97 397 382 HOH HOH . 
U 6 HOH A 98 398 351 HOH HOH . 
U 6 HOH A 99 399 420 HOH HOH . 
U 6 HOH A 100 400 327 HOH HOH . 
U 6 HOH A 101 401 18 HOH HOH . 
U 6 HOH A 102 402 428 HOH HOH . 
U 6 HOH A 103 403 338 HOH HOH . 
U 6 HOH A 104 404 332 HOH HOH . 
U 6 HOH A 105 405 376 HOH HOH . 
U 6 HOH A 106 406 374 HOH HOH . 
U 6 HOH A 107 407 331 HOH HOH . 
U 6 HOH A 108 408 343 HOH HOH . 
U 6 HOH A 109 409 323 HOH HOH . 
U 6 HOH A 110 410 344 HOH HOH . 
U 6 HOH A 111 411 346 HOH HOH . 
U 6 HOH A 112 412 336 HOH HOH . 
U 6 HOH A 113 413 313 HOH HOH . 
U 6 HOH A 114 414 437 HOH HOH . 
U 6 HOH A 115 415 13 HOH HOH . 
U 6 HOH A 116 416 334 HOH HOH . 
U 6 HOH A 117 417 347 HOH HOH . 
U 6 HOH A 118 418 9 HOH HOH . 
U 6 HOH A 119 419 418 HOH HOH . 
U 6 HOH A 120 420 345 HOH HOH . 
U 6 HOH A 121 421 337 HOH HOH . 
U 6 HOH A 122 422 340 HOH HOH . 
U 6 HOH A 123 423 419 HOH HOH . 
U 6 HOH A 124 424 320 HOH HOH . 
U 6 HOH A 125 425 396 HOH HOH . 
U 6 HOH A 126 426 426 HOH HOH . 
U 6 HOH A 127 427 321 HOH HOH . 
U 6 HOH A 128 428 393 HOH HOH . 
U 6 HOH A 129 429 348 HOH HOH . 
U 6 HOH A 130 430 412 HOH HOH . 
U 6 HOH A 131 431 341 HOH HOH . 
U 6 HOH A 132 432 399 HOH HOH . 
U 6 HOH A 133 433 429 HOH HOH . 
U 6 HOH A 134 434 339 HOH HOH . 
U 6 HOH A 135 435 413 HOH HOH . 
U 6 HOH A 136 436 404 HOH HOH . 
U 6 HOH A 137 437 335 HOH HOH . 
U 6 HOH A 138 438 397 HOH HOH . 
U 6 HOH A 139 439 402 HOH HOH . 
U 6 HOH A 140 440 349 HOH HOH . 
U 6 HOH A 141 441 430 HOH HOH . 
U 6 HOH A 142 442 354 HOH HOH . 
U 6 HOH A 143 443 342 HOH HOH . 
U 6 HOH A 144 444 409 HOH HOH . 
U 6 HOH A 145 445 414 HOH HOH . 
U 6 HOH A 146 446 425 HOH HOH . 
U 6 HOH A 147 447 410 HOH HOH . 
U 6 HOH A 148 448 407 HOH HOH . 
U 6 HOH A 149 449 350 HOH HOH . 
U 6 HOH A 150 450 416 HOH HOH . 
U 6 HOH A 151 451 317 HOH HOH . 
U 6 HOH A 152 452 353 HOH HOH . 
U 6 HOH A 153 453 395 HOH HOH . 
U 6 HOH A 154 454 415 HOH HOH . 
U 6 HOH A 155 455 398 HOH HOH . 
U 6 HOH A 156 456 411 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . G 3 -4.912 -14.596 -2.662 0.68 12.06 ? N NO3 206 A 1 
HETATM 2 O O1 NO3 . . . G 3 -4.381 -14.023 -1.626 0.68 10.61 ? O1 NO3 206 A 1 
HETATM 3 O O2 NO3 . . . G 3 -5.811 -14.035 -3.483 0.68 12.1 ? O2 NO3 206 A 1 
HETATM 4 O O3 NO3 . . . G 3 -4.619 -15.886 -3.046 0.68 12.83 ? O3 NO3 206 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#