data_5HN5 # _model_server_result.job_id SvNan-XQFrqSHGZGFp1MCg _model_server_result.datetime_utc '2024-11-05 00:53:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hn5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5HN5 # _exptl.entry_id 5HN5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOCITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HN5 _cell.length_a 80.372 _cell.length_b 80.372 _cell.length_c 141.063 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HN5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -80.372 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 194 A ASP 194 1_555 C MN MN . A MN 402 5_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A OD1 ASP 218 A ASP 218 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc3 B O1 ICT . A ICT 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc4 B O7 ICT . A ICT 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc5 C MN MN . A MN 402 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 C MN MN . A MN 402 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id ICT _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ICT doub 152 n n C1 O2 ICT sing 153 n n C1 C2 ICT sing 154 n n O2 HO2 ICT sing 155 n n C2 O7 ICT sing 156 n n C2 C3 ICT sing 157 n n C2 H2 ICT sing 158 n n O7 HO7 ICT sing 159 n n C3 C4 ICT sing 160 n n C3 C6 ICT sing 161 n n C3 H3 ICT sing 162 n n C4 C5 ICT sing 163 n n C4 H41 ICT sing 164 n n C4 H42 ICT sing 165 n n C5 O3 ICT doub 166 n n C5 O4 ICT sing 167 n n O4 HO4 ICT sing 168 n n C6 O5 ICT doub 169 n n C6 O6 ICT sing 170 n n O6 HO6 ICT sing 171 n n # _atom_sites.entry_id 5HN5 _atom_sites.fract_transf_matrix[1][1] 0.012442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ICT A 1 401 1 ICT ICT . C 3 MN A 1 402 1 MN MN . D 4 MPD A 1 403 1 MPD MPD . E 5 HOH A 1 501 10 HOH HOH . E 5 HOH A 2 502 11 HOH HOH . E 5 HOH A 3 503 1 HOH HOH . E 5 HOH A 4 504 6 HOH HOH . E 5 HOH A 5 505 14 HOH HOH . E 5 HOH A 6 506 2 HOH HOH . E 5 HOH A 7 507 41 HOH HOH . E 5 HOH A 8 508 27 HOH HOH . E 5 HOH A 9 509 4 HOH HOH . E 5 HOH A 10 510 12 HOH HOH . E 5 HOH A 11 511 18 HOH HOH . E 5 HOH A 12 512 5 HOH HOH . E 5 HOH A 13 513 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ICT . . . B 2 -27.156 6.512 2.798 1 51.19 ? C1 ICT 401 A 1 HETATM 2 O O1 ICT . . . B 2 -28.186 7.183 3.014 1 54.45 ? O1 ICT 401 A 1 HETATM 3 O O2 ICT . . . B 2 -26.385 6.187 3.704 1 51.71 ? O2 ICT 401 A 1 HETATM 4 C C2 ICT . . . B 2 -26.858 5.964 1.362 1 50.25 ? C2 ICT 401 A 1 HETATM 5 O O7 ICT . . . B 2 -27.917 6.27 0.384 1 52.07 ? O7 ICT 401 A 1 HETATM 6 C C3 ICT . . . B 2 -26.699 4.449 1.481 1 51.16 ? C3 ICT 401 A 1 HETATM 7 C C4 ICT . . . B 2 -26.236 3.682 0.257 1 55.9 ? C4 ICT 401 A 1 HETATM 8 C C5 ICT . . . B 2 -25.2 4.418 -0.564 1 63.45 ? C5 ICT 401 A 1 HETATM 9 O O3 ICT . . . B 2 -25.629 5.278 -1.373 1 74.91 ? O3 ICT 401 A 1 HETATM 10 O O4 ICT . . . B 2 -23.999 4.059 -0.376 1 54.23 ? O4 ICT 401 A 1 HETATM 11 C C6 ICT . . . B 2 -28.019 3.787 1.976 1 51.48 ? C6 ICT 401 A 1 HETATM 12 O O5 ICT . . . B 2 -28.676 3.061 1.182 1 53.76 ? O5 ICT 401 A 1 HETATM 13 O O6 ICT . . . B 2 -28.296 3.965 3.176 1 47.06 ? O6 ICT 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #