data_5HN6 # _model_server_result.job_id So7dLSuKc0JPFvYEZ6ManA _model_server_result.datetime_utc '2025-01-02 17:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hn6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HN6 # _exptl.entry_id 5HN6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HN6 _cell.length_a 80.161 _cell.length_b 80.161 _cell.length_c 142.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HN6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 285.78 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 194 A ASP 194 1_555 C MN MN . A MN 402 5_557 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc2 A OD1 ASP 218 A ASP 218 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc3 B O1 IPM . A IPM 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc4 B O3 IPM . A IPM 401 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 C MN MN . A MN 402 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc6 C MN MN . A MN 402 1_555 E O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 260 n n C1 H11 MPD sing 261 n n C1 H12 MPD sing 262 n n C1 H13 MPD sing 263 n n C2 O2 MPD sing 264 n n C2 CM MPD sing 265 n n C2 C3 MPD sing 266 n n O2 HO2 MPD sing 267 n n CM HM1 MPD sing 268 n n CM HM2 MPD sing 269 n n CM HM3 MPD sing 270 n n C3 C4 MPD sing 271 n n C3 H31 MPD sing 272 n n C3 H32 MPD sing 273 n n C4 O4 MPD sing 274 n n C4 C5 MPD sing 275 n n C4 H4 MPD sing 276 n n O4 HO4 MPD sing 277 n n C5 H51 MPD sing 278 n n C5 H52 MPD sing 279 n n C5 H53 MPD sing 280 n n # _atom_sites.entry_id 5HN6 _atom_sites.fract_transf_matrix[1][1] 0.012475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPM A 1 401 1 IPM IPM . C 3 MN A 1 402 1 MN MN . D 4 MPD A 1 403 1 MPD MPD . E 5 HOH A 1 501 45 HOH HOH . E 5 HOH A 2 502 48 HOH HOH . E 5 HOH A 3 503 12 HOH HOH . E 5 HOH A 4 504 17 HOH HOH . E 5 HOH A 5 505 11 HOH HOH . E 5 HOH A 6 506 1 HOH HOH . E 5 HOH A 7 507 47 HOH HOH . E 5 HOH A 8 508 18 HOH HOH . E 5 HOH A 9 509 20 HOH HOH . E 5 HOH A 10 510 23 HOH HOH . E 5 HOH A 11 511 8 HOH HOH . E 5 HOH A 12 512 22 HOH HOH . E 5 HOH A 13 513 5 HOH HOH . E 5 HOH A 14 514 21 HOH HOH . E 5 HOH A 15 515 19 HOH HOH . E 5 HOH A 16 516 6 HOH HOH . E 5 HOH A 17 517 10 HOH HOH . E 5 HOH A 18 518 3 HOH HOH . E 5 HOH A 19 519 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 4 17.768 57.447 140.099 1 67.18 ? C1 MPD 403 A 1 HETATM 2 C C2 MPD . . . D 4 17.606 58.692 140.956 1 70.38 ? C2 MPD 403 A 1 HETATM 3 O O2 MPD . . . D 4 18.449 59.713 140.381 1 71.73 ? O2 MPD 403 A 1 HETATM 4 C CM MPD . . . D 4 16.142 59.155 140.94 1 67.13 ? CM MPD 403 A 1 HETATM 5 C C3 MPD . . . D 4 18.023 58.419 142.413 1 66.84 ? C3 MPD 403 A 1 HETATM 6 C C4 MPD . . . D 4 19.515 58.2 142.615 1 67.44 ? C4 MPD 403 A 1 HETATM 7 O O4 MPD . . . D 4 20.241 59.426 142.582 1 74.92 ? O4 MPD 403 A 1 HETATM 8 C C5 MPD . . . D 4 19.791 57.555 143.962 1 73.1 ? C5 MPD 403 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #