data_5HNB
#
_model_server_result.job_id            gqOxXIWdbDmfYciNtmjbCw 
_model_server_result.datetime_utc      '2024-11-26 05:54:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hnb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
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_entry.id    5HNB 
#
_exptl.entry_id    5HNB 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HNB 
_cell.length_a            71.232 
_cell.length_b            71.439 
_cell.length_c            171 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HNB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 133 n n 
C1 C2 EDO sing 134 n n 
C1 H11 EDO sing 135 n n 
C1 H12 EDO sing 136 n n 
O1 HO1 EDO sing 137 n n 
C2 O2 EDO sing 138 n n 
C2 H21 EDO sing 139 n n 
C2 H22 EDO sing 140 n n 
O2 HO2 EDO sing 141 n n 
#
_atom_sites.entry_id                     5HNB 
_atom_sites.fract_transf_matrix[1][1]    0.014039 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005848 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 62M A 1 401 1 62M INX . 
D 4 FMT A 1 402 3 FMT FMT . 
E 4 FMT A 1 403 5 FMT FMT . 
F 4 FMT A 1 404 6 FMT FMT . 
G 4 FMT A 1 405 7 FMT FMT . 
H 4 FMT A 1 406 8 FMT FMT . 
I 5 EDO B 1 301 1 EDO EDO . 
J 5 EDO B 1 302 2 EDO EDO . 
K 4 FMT B 1 303 4 FMT FMT . 
L 6 HOH A 1 501 36 HOH HOH . 
L 6 HOH A 2 502 120 HOH HOH . 
L 6 HOH A 3 503 100 HOH HOH . 
L 6 HOH A 4 504 47 HOH HOH . 
L 6 HOH A 5 505 5 HOH HOH . 
L 6 HOH A 6 506 44 HOH HOH . 
L 6 HOH A 7 507 121 HOH HOH . 
L 6 HOH A 8 508 32 HOH HOH . 
L 6 HOH A 9 509 80 HOH HOH . 
L 6 HOH A 10 510 43 HOH HOH . 
L 6 HOH A 11 511 130 HOH HOH . 
L 6 HOH A 12 512 45 HOH HOH . 
L 6 HOH A 13 513 75 HOH HOH . 
L 6 HOH A 14 514 72 HOH HOH . 
L 6 HOH A 15 515 40 HOH HOH . 
L 6 HOH A 16 516 68 HOH HOH . 
L 6 HOH A 17 517 123 HOH HOH . 
L 6 HOH A 18 518 67 HOH HOH . 
L 6 HOH A 19 519 77 HOH HOH . 
L 6 HOH A 20 520 26 HOH HOH . 
L 6 HOH A 21 521 113 HOH HOH . 
L 6 HOH A 22 522 93 HOH HOH . 
L 6 HOH A 23 523 83 HOH HOH . 
L 6 HOH A 24 524 13 HOH HOH . 
L 6 HOH A 25 525 116 HOH HOH . 
L 6 HOH A 26 526 41 HOH HOH . 
L 6 HOH A 27 527 63 HOH HOH . 
L 6 HOH A 28 528 124 HOH HOH . 
L 6 HOH A 29 529 65 HOH HOH . 
L 6 HOH A 30 530 39 HOH HOH . 
L 6 HOH A 31 531 6 HOH HOH . 
L 6 HOH A 32 532 30 HOH HOH . 
L 6 HOH A 33 533 34 HOH HOH . 
L 6 HOH A 34 534 33 HOH HOH . 
L 6 HOH A 35 535 48 HOH HOH . 
L 6 HOH A 36 536 19 HOH HOH . 
L 6 HOH A 37 537 9 HOH HOH . 
L 6 HOH A 38 538 60 HOH HOH . 
L 6 HOH A 39 539 31 HOH HOH . 
L 6 HOH A 40 540 87 HOH HOH . 
L 6 HOH A 41 541 66 HOH HOH . 
L 6 HOH A 42 542 88 HOH HOH . 
L 6 HOH A 43 543 114 HOH HOH . 
L 6 HOH A 44 544 61 HOH HOH . 
L 6 HOH A 45 545 79 HOH HOH . 
L 6 HOH A 46 546 101 HOH HOH . 
L 6 HOH A 47 547 2 HOH HOH . 
L 6 HOH A 48 548 102 HOH HOH . 
L 6 HOH A 49 549 28 HOH HOH . 
L 6 HOH A 50 550 38 HOH HOH . 
L 6 HOH A 51 551 84 HOH HOH . 
L 6 HOH A 52 552 86 HOH HOH . 
L 6 HOH A 53 553 58 HOH HOH . 
L 6 HOH A 54 554 119 HOH HOH . 
L 6 HOH A 55 555 18 HOH HOH . 
L 6 HOH A 56 556 46 HOH HOH . 
L 6 HOH A 57 557 20 HOH HOH . 
L 6 HOH A 58 558 69 HOH HOH . 
L 6 HOH A 59 559 24 HOH HOH . 
L 6 HOH A 60 560 27 HOH HOH . 
L 6 HOH A 61 561 115 HOH HOH . 
L 6 HOH A 62 562 1 HOH HOH . 
L 6 HOH A 63 563 81 HOH HOH . 
L 6 HOH A 64 564 4 HOH HOH . 
L 6 HOH A 65 565 35 HOH HOH . 
L 6 HOH A 66 566 125 HOH HOH . 
L 6 HOH A 67 567 42 HOH HOH . 
L 6 HOH A 68 568 29 HOH HOH . 
L 6 HOH A 69 569 71 HOH HOH . 
L 6 HOH A 70 570 122 HOH HOH . 
L 6 HOH A 71 571 25 HOH HOH . 
L 6 HOH A 72 572 85 HOH HOH . 
L 6 HOH A 73 573 131 HOH HOH . 
L 6 HOH A 74 574 62 HOH HOH . 
L 6 HOH A 75 575 22 HOH HOH . 
L 6 HOH A 76 576 21 HOH HOH . 
L 6 HOH A 77 577 23 HOH HOH . 
L 6 HOH A 78 578 78 HOH HOH . 
L 6 HOH A 79 579 70 HOH HOH . 
L 6 HOH A 80 580 73 HOH HOH . 
L 6 HOH A 81 581 59 HOH HOH . 
L 6 HOH A 82 582 37 HOH HOH . 
L 6 HOH A 83 583 82 HOH HOH . 
L 6 HOH A 84 584 74 HOH HOH . 
M 6 HOH B 1 401 49 HOH HOH . 
M 6 HOH B 2 402 110 HOH HOH . 
M 6 HOH B 3 403 10 HOH HOH . 
M 6 HOH B 4 404 107 HOH HOH . 
M 6 HOH B 5 405 99 HOH HOH . 
M 6 HOH B 6 406 103 HOH HOH . 
M 6 HOH B 7 407 76 HOH HOH . 
M 6 HOH B 8 408 11 HOH HOH . 
M 6 HOH B 9 409 52 HOH HOH . 
M 6 HOH B 10 410 108 HOH HOH . 
M 6 HOH B 11 411 57 HOH HOH . 
M 6 HOH B 12 412 17 HOH HOH . 
M 6 HOH B 13 413 53 HOH HOH . 
M 6 HOH B 14 414 95 HOH HOH . 
M 6 HOH B 15 415 50 HOH HOH . 
M 6 HOH B 16 416 54 HOH HOH . 
M 6 HOH B 17 417 109 HOH HOH . 
M 6 HOH B 18 418 16 HOH HOH . 
M 6 HOH B 19 419 112 HOH HOH . 
M 6 HOH B 20 420 89 HOH HOH . 
M 6 HOH B 21 421 96 HOH HOH . 
M 6 HOH B 22 422 7 HOH HOH . 
M 6 HOH B 23 423 3 HOH HOH . 
M 6 HOH B 24 424 105 HOH HOH . 
M 6 HOH B 25 425 55 HOH HOH . 
M 6 HOH B 26 426 64 HOH HOH . 
M 6 HOH B 27 427 12 HOH HOH . 
M 6 HOH B 28 428 51 HOH HOH . 
M 6 HOH B 29 429 92 HOH HOH . 
M 6 HOH B 30 430 14 HOH HOH . 
M 6 HOH B 31 431 104 HOH HOH . 
M 6 HOH B 32 432 117 HOH HOH . 
M 6 HOH B 33 433 56 HOH HOH . 
M 6 HOH B 34 434 15 HOH HOH . 
M 6 HOH B 35 435 8 HOH HOH . 
M 6 HOH B 36 436 94 HOH HOH . 
M 6 HOH B 37 437 111 HOH HOH . 
M 6 HOH B 38 438 126 HOH HOH . 
M 6 HOH B 39 439 98 HOH HOH . 
M 6 HOH B 40 440 90 HOH HOH . 
M 6 HOH B 41 441 91 HOH HOH . 
M 6 HOH B 42 442 106 HOH HOH . 
M 6 HOH B 43 443 127 HOH HOH . 
M 6 HOH B 44 444 128 HOH HOH . 
M 6 HOH B 45 445 118 HOH HOH . 
M 6 HOH B 46 446 97 HOH HOH . 
M 6 HOH B 47 447 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . I 5 -23.098 10.966 -33.562 1 82.57 ? C1 EDO 301 B 1 
HETATM 2 O O1 EDO . . . I 5 -23.973 10.725 -34.669 1 80.62 ? O1 EDO 301 B 1 
HETATM 3 C C2 EDO . . . I 5 -23.744 11.98 -32.616 1 82.97 ? C2 EDO 301 B 1 
HETATM 4 O O2 EDO . . . I 5 -23.146 11.988 -31.308 1 83.28 ? O2 EDO 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#