data_5HNG # _model_server_result.job_id GAs3HKeIDTn4phLmf2w1jA _model_server_result.datetime_utc '2024-11-25 14:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HNG # _exptl.entry_id 5HNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.223 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methoxy-2-(1H-pyrazol-5-yl)-1H-benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HNG _cell.length_a 124.406 _cell.length_b 124.406 _cell.length_c 47.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 192 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.35 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H10 N4 O' _chem_comp.formula_weight 214.223 _chem_comp.id 62O _chem_comp.mon_nstd_flag . _chem_comp.name 6-methoxy-2-(1H-pyrazol-5-yl)-1H-benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C15 62O doub 1 n y N16 N13 62O sing 2 n y C15 C12 62O sing 3 n y N13 C10 62O sing 4 n y C12 C10 62O doub 5 n y C10 C7 62O sing 6 n n C7 N3 62O sing 7 n y C7 N5 62O doub 8 n y N3 C1 62O sing 9 n y N5 C2 62O sing 10 n y C1 C2 62O doub 11 n y C1 C4 62O sing 12 n y C2 C6 62O sing 13 n y C4 C8 62O doub 14 n y C14 O11 62O sing 15 n n C6 C9 62O doub 16 n y C8 C9 62O sing 17 n y C8 O11 62O sing 18 n n C9 H1 62O sing 19 n n C12 H2 62O sing 20 n n C14 H3 62O sing 21 n n C14 H4 62O sing 22 n n C14 H5 62O sing 23 n n C15 H6 62O sing 24 n n N3 H7 62O sing 25 n n C4 H8 62O sing 26 n n C6 H10 62O sing 27 n n N13 H11 62O sing 28 n n # _atom_sites.entry_id 5HNG _atom_sites.fract_transf_matrix[1][1] 0.008038 _atom_sites.fract_transf_matrix[1][2] 0.004641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 2 SO4 SO4 . C 2 SO4 A 1 402 3 SO4 SO4 . D 3 62O A 1 403 1 62O INH . E 4 HOH A 1 501 14 HOH HOH . E 4 HOH A 2 502 11 HOH HOH . E 4 HOH A 3 503 5 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 1 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 10 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 2 HOH HOH . E 4 HOH A 10 510 13 HOH HOH . E 4 HOH A 11 511 9 HOH HOH . E 4 HOH A 12 512 7 HOH HOH . E 4 HOH A 13 513 3 HOH HOH . E 4 HOH A 14 514 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 62O . . . D 3 31.429 24.49 5.915 1 50.58 ? C1 62O 403 A 1 HETATM 2 C C2 62O . . . D 3 32.834 24.357 5.983 1 49.67 ? C2 62O 403 A 1 HETATM 3 C C7 62O . . . D 3 32.384 26.325 5.16 1 46.7 ? C7 62O 403 A 1 HETATM 4 C C8 62O . . . D 3 31.165 22.279 6.837 1 56.95 ? C8 62O 403 A 1 HETATM 5 C C9 62O . . . D 3 32.566 22.137 6.895 1 53.74 ? C9 62O 403 A 1 HETATM 6 C C10 62O . . . D 3 32.532 27.677 4.6 1 44.12 ? C10 62O 403 A 1 HETATM 7 C C12 62O . . . D 3 33.737 28.39 4.446 1 43.19 ? C12 62O 403 A 1 HETATM 8 C C14 62O . . . D 3 29.785 20.328 6.395 1 64.72 ? C14 62O 403 A 1 HETATM 9 C C15 62O . . . D 3 33.445 29.593 3.907 1 43.11 ? C15 62O 403 A 1 HETATM 10 N N3 62O . . . D 3 31.177 25.743 5.403 1 48.65 ? N3 62O 403 A 1 HETATM 11 C C4 62O . . . D 3 30.605 23.455 6.354 1 54.1 ? C4 62O 403 A 1 HETATM 12 N N5 62O . . . D 3 33.358 25.514 5.499 1 48.6 ? N5 62O 403 A 1 HETATM 13 C C6 62O . . . D 3 33.392 23.159 6.475 1 51.15 ? C6 62O 403 A 1 HETATM 14 O O11 62O . . . D 3 30.335 21.3 7.301 1 62.11 ? O11 62O 403 A 1 HETATM 15 N N13 62O . . . D 3 31.549 28.428 4.157 1 44.15 ? N13 62O 403 A 1 HETATM 16 N N16 62O . . . D 3 32.112 29.634 3.711 1 44.57 ? N16 62O 403 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #