data_5HNS # _model_server_result.job_id 4aRNpdghBdkBsJ7SyQtdPA _model_server_result.datetime_utc '2024-10-19 09:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":707}' # _entry.id 5HNS # _exptl.entry_id 5HNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HNS _cell.length_a 87.89 _cell.length_b 115.91 _cell.length_c 147.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K,L,M,P 1 1 B,G,H,I,J,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 9 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 524 NAG 2 n C NAG 2 C 2 NAG C 525 NAG 3 n D NAG 1 D 1 NAG C 557 NAG 3 n D NAG 2 D 2 NAG C 558 NAG 3 n D BMA 3 D 3 BMA C 559 BMA 3 n D MAN 4 D 4 MAN C 560 MAN 2 n E NAG 1 E 1 NAG C 598 NAG 2 n E NAG 2 E 2 NAG C 599 NAG 2 n F NAG 1 F 1 NAG D 478 NAG 2 n F NAG 2 F 2 NAG D 479 NAG 2 n G NAG 1 G 1 NAG C 478 NAG 2 n G NAG 2 G 2 NAG C 479 NAG 2 n H NAG 1 H 1 NAG D 524 NAG 2 n H NAG 2 H 2 NAG D 525 NAG 4 n I NAG 1 I 1 NAG D 557 NAG 4 n I NAG 2 I 2 NAG D 558 NAG 4 n I BMA 3 I 3 BMA D 559 BMA 4 n I MAN 4 I 4 MAN D 560 MAN 4 n I MAN 5 I 5 MAN D 561 MAN 5 n J NAG 1 J 1 NAG D 598 NAG 5 n J NAG 2 J 2 NAG D 599 NAG 5 n J BMA 3 J 3 BMA D 600 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 468 1_555 A SG CYS 96 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 133 A CYS 516 1_555 A SG CYS 150 A CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 B SG CYS 85 B CYS 468 1_555 B SG CYS 96 B CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf4 B SG CYS 133 B CYS 516 1_555 B SG CYS 150 B CYS 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 A ND2 ASN 95 A ASN 478 1_555 F C1 NAG . F NAG 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 95 A ASN 478 1_555 F C1 NAG . F NAG 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 141 A ASN 524 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 174 A ASN 557 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale5 A ND2 ASN 189 A ASN 572 1_555 K C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 A ND2 ASN 215 A ASN 598 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B ND2 ASN 95 B ASN 478 1_555 G C1 NAG . G NAG 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 B ND2 ASN 95 B ASN 478 1_555 G C1 NAG . G NAG 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 B ND2 ASN 141 B ASN 524 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 B ND2 ASN 174 B ASN 557 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale11 B ND2 ASN 215 B ASN 598 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale12 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale15 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale16 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale20 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale21 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale22 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale23 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale25 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 266 n n C1 O1 NAG sing 267 n n C1 O5 NAG sing 268 n n C1 H1 NAG sing 269 n n C2 C3 NAG sing 270 n n C2 N2 NAG sing 271 n n C2 H2 NAG sing 272 n n C3 C4 NAG sing 273 n n C3 O3 NAG sing 274 n n C3 H3 NAG sing 275 n n C4 C5 NAG sing 276 n n C4 O4 NAG sing 277 n n C4 H4 NAG sing 278 n n C5 C6 NAG sing 279 n n C5 O5 NAG sing 280 n n C5 H5 NAG sing 281 n n C6 O6 NAG sing 282 n n C6 H61 NAG sing 283 n n C6 H62 NAG sing 284 n n C7 C8 NAG sing 285 n n C7 N2 NAG sing 286 n n C7 O7 NAG doub 287 n n C8 H81 NAG sing 288 n n C8 H82 NAG sing 289 n n C8 H83 NAG sing 290 n n N2 HN2 NAG sing 291 n n O1 HO1 NAG sing 292 n n O3 HO3 NAG sing 293 n n O4 HO4 NAG sing 294 n n O6 HO6 NAG sing 295 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5HNS _atom_sites.fract_transf_matrix[1][1] 0.011378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 NAG A 1 707 572 NAG NAG . L 7 SCN A 1 712 1 SCN SCN . M 7 SCN A 1 713 4 SCN SCN . N 7 SCN B 1 713 2 SCN SCN . O 7 SCN B 1 714 3 SCN SCN . P 8 HOH A 1 801 2 HOH HOH . P 8 HOH A 2 802 44 HOH HOH . P 8 HOH A 3 803 48 HOH HOH . P 8 HOH A 4 804 49 HOH HOH . P 8 HOH A 5 805 20 HOH HOH . P 8 HOH A 6 806 7 HOH HOH . P 8 HOH A 7 807 8 HOH HOH . P 8 HOH A 8 808 5 HOH HOH . P 8 HOH A 9 809 15 HOH HOH . P 8 HOH A 10 810 33 HOH HOH . P 8 HOH A 11 811 6 HOH HOH . P 8 HOH A 12 812 21 HOH HOH . P 8 HOH A 13 813 41 HOH HOH . Q 8 HOH B 1 801 29 HOH HOH . Q 8 HOH B 2 802 22 HOH HOH . Q 8 HOH B 3 803 45 HOH HOH . Q 8 HOH B 4 804 42 HOH HOH . Q 8 HOH B 5 805 14 HOH HOH . Q 8 HOH B 6 806 23 HOH HOH . Q 8 HOH B 7 807 39 HOH HOH . Q 8 HOH B 8 808 37 HOH HOH . Q 8 HOH B 9 809 38 HOH HOH . Q 8 HOH B 10 810 32 HOH HOH . Q 8 HOH B 11 811 51 HOH HOH . Q 8 HOH B 12 812 35 HOH HOH . Q 8 HOH B 13 813 31 HOH HOH . Q 8 HOH B 14 814 34 HOH HOH . Q 8 HOH B 15 815 13 HOH HOH . Q 8 HOH B 16 816 50 HOH HOH . Q 8 HOH B 17 817 26 HOH HOH . Q 8 HOH B 18 818 47 HOH HOH . Q 8 HOH B 19 819 12 HOH HOH . Q 8 HOH B 20 820 30 HOH HOH . Q 8 HOH B 21 821 25 HOH HOH . Q 8 HOH B 22 822 17 HOH HOH . Q 8 HOH B 23 823 3 HOH HOH . Q 8 HOH B 24 824 27 HOH HOH . Q 8 HOH B 25 825 36 HOH HOH . Q 8 HOH B 26 826 16 HOH HOH . Q 8 HOH B 27 827 46 HOH HOH . Q 8 HOH B 28 828 52 HOH HOH . Q 8 HOH B 29 829 28 HOH HOH . Q 8 HOH B 30 830 9 HOH HOH . Q 8 HOH B 31 831 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 6 84.126 49.936 80.674 1 112.49 ? C1 NAG 707 A 1 HETATM 2 C C2 NAG . . . K 6 83.259 49.687 81.896 1 116.15 ? C2 NAG 707 A 1 HETATM 3 C C3 NAG . . . K 6 83.469 50.763 82.947 1 116.39 ? C3 NAG 707 A 1 HETATM 4 C C4 NAG . . . K 6 84.947 50.802 83.311 1 119.28 ? C4 NAG 707 A 1 HETATM 5 C C5 NAG . . . K 6 85.823 50.925 82.055 1 122.05 ? C5 NAG 707 A 1 HETATM 6 C C6 NAG . . . K 6 87.301 50.838 82.434 1 125.75 ? C6 NAG 707 A 1 HETATM 7 C C7 NAG . . . K 6 81.003 48.792 81.861 1 117.55 ? C7 NAG 707 A 1 HETATM 8 C C8 NAG . . . K 6 79.667 48.986 81.243 1 117.11 ? C8 NAG 707 A 1 HETATM 9 N N2 NAG . . . K 6 81.891 49.682 81.45 1 116.36 ? N2 NAG 707 A 1 HETATM 10 O O3 NAG . . . K 6 82.661 50.492 84.099 1 113.06 ? O3 NAG 707 A 1 HETATM 11 O O4 NAG . . . K 6 85.176 51.907 84.192 1 118.16 ? O4 NAG 707 A 1 HETATM 12 O O5 NAG . . . K 6 85.501 49.915 81.077 1 117.74 ? O5 NAG 707 A 1 HETATM 13 O O6 NAG . . . K 6 88.116 50.715 81.261 1 128.16 ? O6 NAG 707 A 1 HETATM 14 O O7 NAG . . . K 6 81.226 47.894 82.658 1 120.18 ? O7 NAG 707 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #