data_5HNU # _model_server_result.job_id mMFqa1d83fw3nrL0fJu88g _model_server_result.datetime_utc '2024-11-22 20:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5HNU # _exptl.entry_id 5HNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.07 _cell.angle_gamma 90 _cell.entry_id 5HNU _cell.length_a 48.666 _cell.length_b 81.826 _cell.length_c 76.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 279 n n PA O2A NAP sing 280 n n PA O5B NAP sing 281 n n PA O3 NAP sing 282 n n O2A HOA2 NAP sing 283 n n O5B C5B NAP sing 284 n n C5B C4B NAP sing 285 n n C5B H51A NAP sing 286 n n C5B H52A NAP sing 287 n n C4B O4B NAP sing 288 n n C4B C3B NAP sing 289 n n C4B H4B NAP sing 290 n n O4B C1B NAP sing 291 n n C3B O3B NAP sing 292 n n C3B C2B NAP sing 293 n n C3B H3B NAP sing 294 n n O3B HO3A NAP sing 295 n n C2B O2B NAP sing 296 n n C2B C1B NAP sing 297 n n C2B H2B NAP sing 298 n n O2B P2B NAP sing 299 n n C1B N9A NAP sing 300 n n C1B H1B NAP sing 301 n n N9A C8A NAP sing 302 n y N9A C4A NAP sing 303 n y C8A N7A NAP doub 304 n y C8A H8A NAP sing 305 n n N7A C5A NAP sing 306 n y C5A C6A NAP sing 307 n y C5A C4A NAP doub 308 n y C6A N6A NAP sing 309 n n C6A N1A NAP doub 310 n y N6A H61A NAP sing 311 n n N6A H62A NAP sing 312 n n N1A C2A NAP sing 313 n y C2A N3A NAP doub 314 n y C2A H2A NAP sing 315 n n N3A C4A NAP sing 316 n y O3 PN NAP sing 317 n n PN O1N NAP doub 318 n n PN O2N NAP sing 319 n n PN O5D NAP sing 320 n n O5D C5D NAP sing 321 n n C5D C4D NAP sing 322 n n C5D H51N NAP sing 323 n n C5D H52N NAP sing 324 n n C4D O4D NAP sing 325 n n C4D C3D NAP sing 326 n n C4D H4D NAP sing 327 n n O4D C1D NAP sing 328 n n C3D O3D NAP sing 329 n n C3D C2D NAP sing 330 n n C3D H3D NAP sing 331 n n O3D HO3N NAP sing 332 n n C2D O2D NAP sing 333 n n C2D C1D NAP sing 334 n n C2D H2D NAP sing 335 n n O2D HO2N NAP sing 336 n n C1D N1N NAP sing 337 n n C1D H1D NAP sing 338 n n N1N C2N NAP sing 339 n y N1N C6N NAP doub 340 n y C2N C3N NAP doub 341 n y C2N H2N NAP sing 342 n n C3N C7N NAP sing 343 n n C3N C4N NAP sing 344 n y C7N O7N NAP doub 345 n n C7N N7N NAP sing 346 n n N7N H71N NAP sing 347 n n N7N H72N NAP sing 348 n n C4N C5N NAP doub 349 n y C4N H4N NAP sing 350 n n C5N C6N NAP sing 351 n y C5N H5N NAP sing 352 n n C6N H6N NAP sing 353 n n P2B O1X NAP doub 354 n n P2B O2X NAP sing 355 n n P2B O3X NAP sing 356 n n O2X HOP2 NAP sing 357 n n O3X HOP3 NAP sing 358 n n # _atom_sites.entry_id 5HNU _atom_sites.fract_transf_matrix[1][1] 0.020548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004393 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 65D C 1 501 501 65D XXX . E 2 NAP C 1 502 3 NAP NAP . F 4 HOH A 1 501 84 HOH HOH . F 4 HOH A 2 502 75 HOH HOH . F 4 HOH A 3 503 28 HOH HOH . F 4 HOH A 4 504 129 HOH HOH . F 4 HOH A 5 505 23 HOH HOH . F 4 HOH A 6 506 69 HOH HOH . F 4 HOH A 7 507 78 HOH HOH . F 4 HOH A 8 508 120 HOH HOH . F 4 HOH A 9 509 87 HOH HOH . F 4 HOH A 10 510 55 HOH HOH . F 4 HOH A 11 511 53 HOH HOH . F 4 HOH A 12 512 111 HOH HOH . F 4 HOH A 13 513 149 HOH HOH . F 4 HOH A 14 514 74 HOH HOH . F 4 HOH A 15 515 81 HOH HOH . F 4 HOH A 16 516 155 HOH HOH . F 4 HOH A 17 517 51 HOH HOH . F 4 HOH A 18 518 79 HOH HOH . F 4 HOH A 19 519 42 HOH HOH . F 4 HOH A 20 520 96 HOH HOH . F 4 HOH A 21 521 4 HOH HOH . F 4 HOH A 22 522 47 HOH HOH . F 4 HOH A 23 523 138 HOH HOH . F 4 HOH A 24 524 66 HOH HOH . F 4 HOH A 25 525 137 HOH HOH . F 4 HOH A 26 526 98 HOH HOH . F 4 HOH A 27 527 115 HOH HOH . F 4 HOH A 28 528 31 HOH HOH . F 4 HOH A 29 529 54 HOH HOH . F 4 HOH A 30 530 58 HOH HOH . F 4 HOH A 31 531 108 HOH HOH . F 4 HOH A 32 532 141 HOH HOH . F 4 HOH A 33 533 142 HOH HOH . F 4 HOH A 34 534 14 HOH HOH . F 4 HOH A 35 535 151 HOH HOH . F 4 HOH A 36 536 15 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 46 HOH HOH . F 4 HOH A 39 539 59 HOH HOH . F 4 HOH A 40 540 45 HOH HOH . F 4 HOH A 41 541 122 HOH HOH . F 4 HOH A 42 542 89 HOH HOH . F 4 HOH A 43 543 109 HOH HOH . F 4 HOH A 44 544 35 HOH HOH . F 4 HOH A 45 545 65 HOH HOH . F 4 HOH A 46 546 16 HOH HOH . F 4 HOH A 47 547 101 HOH HOH . F 4 HOH A 48 548 91 HOH HOH . F 4 HOH A 49 549 62 HOH HOH . F 4 HOH A 50 550 94 HOH HOH . F 4 HOH A 51 551 153 HOH HOH . F 4 HOH A 52 552 34 HOH HOH . F 4 HOH A 53 553 150 HOH HOH . F 4 HOH A 54 554 76 HOH HOH . F 4 HOH A 55 555 32 HOH HOH . F 4 HOH A 56 556 103 HOH HOH . F 4 HOH A 57 557 71 HOH HOH . F 4 HOH A 58 558 132 HOH HOH . F 4 HOH A 59 559 40 HOH HOH . F 4 HOH A 60 560 118 HOH HOH . F 4 HOH A 61 561 147 HOH HOH . F 4 HOH A 62 562 67 HOH HOH . F 4 HOH A 63 563 113 HOH HOH . F 4 HOH A 64 564 127 HOH HOH . F 4 HOH A 65 565 24 HOH HOH . F 4 HOH A 66 566 85 HOH HOH . F 4 HOH A 67 567 56 HOH HOH . F 4 HOH A 68 568 99 HOH HOH . F 4 HOH A 69 569 5 HOH HOH . F 4 HOH A 70 570 38 HOH HOH . F 4 HOH A 71 571 88 HOH HOH . F 4 HOH A 72 572 83 HOH HOH . F 4 HOH A 73 573 95 HOH HOH . F 4 HOH A 74 574 77 HOH HOH . F 4 HOH A 75 575 135 HOH HOH . F 4 HOH A 76 576 10 HOH HOH . F 4 HOH A 77 577 143 HOH HOH . F 4 HOH A 78 578 133 HOH HOH . F 4 HOH A 79 579 158 HOH HOH . F 4 HOH A 80 580 50 HOH HOH . F 4 HOH A 81 581 68 HOH HOH . F 4 HOH A 82 582 136 HOH HOH . F 4 HOH A 83 583 139 HOH HOH . G 4 HOH C 1 601 107 HOH HOH . G 4 HOH C 2 602 121 HOH HOH . G 4 HOH C 3 603 100 HOH HOH . G 4 HOH C 4 604 102 HOH HOH . G 4 HOH C 5 605 80 HOH HOH . G 4 HOH C 6 606 37 HOH HOH . G 4 HOH C 7 607 52 HOH HOH . G 4 HOH C 8 608 73 HOH HOH . G 4 HOH C 9 609 41 HOH HOH . G 4 HOH C 10 610 128 HOH HOH . G 4 HOH C 11 611 125 HOH HOH . G 4 HOH C 12 612 27 HOH HOH . G 4 HOH C 13 613 36 HOH HOH . G 4 HOH C 14 614 123 HOH HOH . G 4 HOH C 15 615 112 HOH HOH . G 4 HOH C 16 616 70 HOH HOH . G 4 HOH C 17 617 82 HOH HOH . G 4 HOH C 18 618 29 HOH HOH . G 4 HOH C 19 619 105 HOH HOH . G 4 HOH C 20 620 44 HOH HOH . G 4 HOH C 21 621 106 HOH HOH . G 4 HOH C 22 622 39 HOH HOH . G 4 HOH C 23 623 6 HOH HOH . G 4 HOH C 24 624 154 HOH HOH . G 4 HOH C 25 625 30 HOH HOH . G 4 HOH C 26 626 124 HOH HOH . G 4 HOH C 27 627 3 HOH HOH . G 4 HOH C 28 628 9 HOH HOH . G 4 HOH C 29 629 140 HOH HOH . G 4 HOH C 30 630 61 HOH HOH . G 4 HOH C 31 631 145 HOH HOH . G 4 HOH C 32 632 97 HOH HOH . G 4 HOH C 33 633 116 HOH HOH . G 4 HOH C 34 634 43 HOH HOH . G 4 HOH C 35 635 22 HOH HOH . G 4 HOH C 36 636 126 HOH HOH . G 4 HOH C 37 637 152 HOH HOH . G 4 HOH C 38 638 20 HOH HOH . G 4 HOH C 39 639 119 HOH HOH . G 4 HOH C 40 640 13 HOH HOH . G 4 HOH C 41 641 148 HOH HOH . G 4 HOH C 42 642 110 HOH HOH . G 4 HOH C 43 643 48 HOH HOH . G 4 HOH C 44 644 26 HOH HOH . G 4 HOH C 45 645 8 HOH HOH . G 4 HOH C 46 646 18 HOH HOH . G 4 HOH C 47 647 49 HOH HOH . G 4 HOH C 48 648 146 HOH HOH . G 4 HOH C 49 649 19 HOH HOH . G 4 HOH C 50 650 33 HOH HOH . G 4 HOH C 51 651 90 HOH HOH . G 4 HOH C 52 652 63 HOH HOH . G 4 HOH C 53 653 60 HOH HOH . G 4 HOH C 54 654 93 HOH HOH . G 4 HOH C 55 655 21 HOH HOH . G 4 HOH C 56 656 131 HOH HOH . G 4 HOH C 57 657 144 HOH HOH . G 4 HOH C 58 658 92 HOH HOH . G 4 HOH C 59 659 25 HOH HOH . G 4 HOH C 60 660 104 HOH HOH . G 4 HOH C 61 661 7 HOH HOH . G 4 HOH C 62 662 64 HOH HOH . G 4 HOH C 63 663 2 HOH HOH . G 4 HOH C 64 664 72 HOH HOH . G 4 HOH C 65 665 114 HOH HOH . G 4 HOH C 66 666 130 HOH HOH . G 4 HOH C 67 667 134 HOH HOH . G 4 HOH C 68 668 17 HOH HOH . G 4 HOH C 69 669 159 HOH HOH . G 4 HOH C 70 670 11 HOH HOH . G 4 HOH C 71 671 117 HOH HOH . G 4 HOH C 72 672 57 HOH HOH . G 4 HOH C 73 673 156 HOH HOH . G 4 HOH C 74 674 157 HOH HOH . G 4 HOH C 75 675 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 10.4 -4.842 8.022 1 12.38 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . C 2 10.854 -5.885 7.025 1 11.69 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . C 2 9.844 -5.255 9.361 1 12.05 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . C 2 11.626 -3.842 8.347 1 11.03 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . C 2 11.47 -2.757 9.26 1 11.95 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . C 2 12.61 -1.744 9.179 1 11.38 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . C 2 13.785 -2.507 9.392 1 10.43 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . C 2 12.802 -1.172 7.788 1 11.32 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . C 2 12.094 0.028 7.502 1 10.94 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . C 2 14.318 -1.071 7.566 1 10.94 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . C 2 14.807 0.274 7.542 1 11.25 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . C 2 14.867 -1.793 8.78 1 10.87 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . C 2 15.938 -2.773 8.509 1 10.78 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . C 2 16.042 -3.645 7.467 1 10.43 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . C 2 17.17 -4.374 7.54 1 10.39 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . C 2 17.753 -4.05 8.703 1 9.98 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . C 2 18.975 -4.466 9.37 1 10.7 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . C 2 19.688 -5.447 8.739 1 10.05 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . C 2 19.325 -3.839 10.525 1 10.6 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . C 2 18.548 -2.835 11.072 1 10.57 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . C 2 17.438 -2.43 10.476 1 9.99 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . C 2 16.979 -2.974 9.332 1 10.93 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . C 2 9.361 -3.839 7.369 1 11.75 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . C 2 7.822 -3.968 6.874 1 11.47 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . C 2 7.816 -2.967 5.763 1 10.86 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . C 2 6.853 -3.852 7.965 1 12.49 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . C 2 7.705 -5.454 6.308 1 10.59 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . C 2 8.421 -5.878 5.16 1 9.86 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . C 2 7.536 -5.967 3.917 1 9.16 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . C 2 6.396 -6.815 4.148 1 9.86 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . C 2 6.938 -4.666 3.339 1 9.14 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . C 2 7.829 -3.833 2.602 1 8.05 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . C 2 5.821 -5.254 2.481 1 8.93 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . C 2 6.402 -5.814 1.314 1 8.65 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . C 2 5.315 -6.423 3.314 1 8.98 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . C 2 4.215 -6.036 4.195 1 9.01 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . C 2 3.005 -6.515 3.903 1 9.45 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . C 2 1.864 -6.281 4.682 1 8.77 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . C 2 0.572 -6.902 4.359 1 9.1 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . C 2 -0.44 -6.423 4.882 1 9 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . C 2 0.546 -8.035 3.66 1 8.42 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . C 2 1.975 -5.469 5.763 1 8.68 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . C 2 3.25 -4.975 6.072 1 9 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . C 2 4.354 -5.287 5.32 1 8.93 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . C 2 15.754 0.715 6.306 1 12.35 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . C 2 16.264 2.068 6.601 1 11.92 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . C 2 16.81 -0.249 6.185 1 10.7 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . C 2 14.882 0.69 5.053 1 10.93 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #