data_5HNU # _model_server_result.job_id 2_Is8_3qc6tTAExF0Y5UsQ _model_server_result.datetime_utc '2024-11-22 19:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5HNU # _exptl.entry_id 5HNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.332 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl 3,4,5-trihydroxybenzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.07 _cell.angle_gamma 90 _cell.entry_id 5HNU _cell.length_a 48.666 _cell.length_b 81.826 _cell.length_c 76.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 O5' _chem_comp.formula_weight 282.332 _chem_comp.id 65D _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 3,4,5-trihydroxybenzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Octyl gallate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C12 65D sing 1 n n O4 C11 65D sing 2 n n C12 C11 65D doub 3 n y C12 C13 65D sing 4 n y O2 C13 65D sing 5 n n C11 C10 65D sing 6 n y C13 C14 65D doub 7 n y C10 C9 65D doub 8 n y C14 C9 65D sing 9 n y C9 C8 65D sing 10 n n C8 O 65D sing 11 n n C8 O1 65D doub 12 n n C4 C5 65D sing 13 n n C4 C3 65D sing 14 n n O C7 65D sing 15 n n C5 C6 65D sing 16 n n C3 C2 65D sing 17 n n C7 C6 65D sing 18 n n C2 C1 65D sing 19 n n C1 C 65D sing 20 n n O3 H1 65D sing 21 n n C4 H2 65D sing 22 n n C4 H3 65D sing 23 n n C5 H4 65D sing 24 n n C5 H5 65D sing 25 n n O4 H6 65D sing 26 n n C6 H7 65D sing 27 n n C6 H8 65D sing 28 n n C7 H9 65D sing 29 n n C7 H10 65D sing 30 n n C10 H11 65D sing 31 n n C14 H12 65D sing 32 n n O2 H13 65D sing 33 n n C3 H14 65D sing 34 n n C2 H15 65D sing 35 n n C1 H16 65D sing 36 n n C1 H17 65D sing 37 n n C H18 65D sing 38 n n C H19 65D sing 39 n n C H20 65D sing 40 n n C3 H21 65D sing 41 n n C2 H22 65D sing 42 n n # _atom_sites.entry_id 5HNU _atom_sites.fract_transf_matrix[1][1] 0.020548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004393 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 65D C 1 501 501 65D XXX . E 2 NAP C 1 502 3 NAP NAP . F 4 HOH A 1 501 84 HOH HOH . F 4 HOH A 2 502 75 HOH HOH . F 4 HOH A 3 503 28 HOH HOH . F 4 HOH A 4 504 129 HOH HOH . F 4 HOH A 5 505 23 HOH HOH . F 4 HOH A 6 506 69 HOH HOH . F 4 HOH A 7 507 78 HOH HOH . F 4 HOH A 8 508 120 HOH HOH . F 4 HOH A 9 509 87 HOH HOH . F 4 HOH A 10 510 55 HOH HOH . F 4 HOH A 11 511 53 HOH HOH . F 4 HOH A 12 512 111 HOH HOH . F 4 HOH A 13 513 149 HOH HOH . F 4 HOH A 14 514 74 HOH HOH . F 4 HOH A 15 515 81 HOH HOH . F 4 HOH A 16 516 155 HOH HOH . F 4 HOH A 17 517 51 HOH HOH . F 4 HOH A 18 518 79 HOH HOH . F 4 HOH A 19 519 42 HOH HOH . F 4 HOH A 20 520 96 HOH HOH . F 4 HOH A 21 521 4 HOH HOH . F 4 HOH A 22 522 47 HOH HOH . F 4 HOH A 23 523 138 HOH HOH . F 4 HOH A 24 524 66 HOH HOH . F 4 HOH A 25 525 137 HOH HOH . F 4 HOH A 26 526 98 HOH HOH . F 4 HOH A 27 527 115 HOH HOH . F 4 HOH A 28 528 31 HOH HOH . F 4 HOH A 29 529 54 HOH HOH . F 4 HOH A 30 530 58 HOH HOH . F 4 HOH A 31 531 108 HOH HOH . F 4 HOH A 32 532 141 HOH HOH . F 4 HOH A 33 533 142 HOH HOH . F 4 HOH A 34 534 14 HOH HOH . F 4 HOH A 35 535 151 HOH HOH . F 4 HOH A 36 536 15 HOH HOH . F 4 HOH A 37 537 12 HOH HOH . F 4 HOH A 38 538 46 HOH HOH . F 4 HOH A 39 539 59 HOH HOH . F 4 HOH A 40 540 45 HOH HOH . F 4 HOH A 41 541 122 HOH HOH . F 4 HOH A 42 542 89 HOH HOH . F 4 HOH A 43 543 109 HOH HOH . F 4 HOH A 44 544 35 HOH HOH . F 4 HOH A 45 545 65 HOH HOH . F 4 HOH A 46 546 16 HOH HOH . F 4 HOH A 47 547 101 HOH HOH . F 4 HOH A 48 548 91 HOH HOH . F 4 HOH A 49 549 62 HOH HOH . F 4 HOH A 50 550 94 HOH HOH . F 4 HOH A 51 551 153 HOH HOH . F 4 HOH A 52 552 34 HOH HOH . F 4 HOH A 53 553 150 HOH HOH . F 4 HOH A 54 554 76 HOH HOH . F 4 HOH A 55 555 32 HOH HOH . F 4 HOH A 56 556 103 HOH HOH . F 4 HOH A 57 557 71 HOH HOH . F 4 HOH A 58 558 132 HOH HOH . F 4 HOH A 59 559 40 HOH HOH . F 4 HOH A 60 560 118 HOH HOH . F 4 HOH A 61 561 147 HOH HOH . F 4 HOH A 62 562 67 HOH HOH . F 4 HOH A 63 563 113 HOH HOH . F 4 HOH A 64 564 127 HOH HOH . F 4 HOH A 65 565 24 HOH HOH . F 4 HOH A 66 566 85 HOH HOH . F 4 HOH A 67 567 56 HOH HOH . F 4 HOH A 68 568 99 HOH HOH . F 4 HOH A 69 569 5 HOH HOH . F 4 HOH A 70 570 38 HOH HOH . F 4 HOH A 71 571 88 HOH HOH . F 4 HOH A 72 572 83 HOH HOH . F 4 HOH A 73 573 95 HOH HOH . F 4 HOH A 74 574 77 HOH HOH . F 4 HOH A 75 575 135 HOH HOH . F 4 HOH A 76 576 10 HOH HOH . F 4 HOH A 77 577 143 HOH HOH . F 4 HOH A 78 578 133 HOH HOH . F 4 HOH A 79 579 158 HOH HOH . F 4 HOH A 80 580 50 HOH HOH . F 4 HOH A 81 581 68 HOH HOH . F 4 HOH A 82 582 136 HOH HOH . F 4 HOH A 83 583 139 HOH HOH . G 4 HOH C 1 601 107 HOH HOH . G 4 HOH C 2 602 121 HOH HOH . G 4 HOH C 3 603 100 HOH HOH . G 4 HOH C 4 604 102 HOH HOH . G 4 HOH C 5 605 80 HOH HOH . G 4 HOH C 6 606 37 HOH HOH . G 4 HOH C 7 607 52 HOH HOH . G 4 HOH C 8 608 73 HOH HOH . G 4 HOH C 9 609 41 HOH HOH . G 4 HOH C 10 610 128 HOH HOH . G 4 HOH C 11 611 125 HOH HOH . G 4 HOH C 12 612 27 HOH HOH . G 4 HOH C 13 613 36 HOH HOH . G 4 HOH C 14 614 123 HOH HOH . G 4 HOH C 15 615 112 HOH HOH . G 4 HOH C 16 616 70 HOH HOH . G 4 HOH C 17 617 82 HOH HOH . G 4 HOH C 18 618 29 HOH HOH . G 4 HOH C 19 619 105 HOH HOH . G 4 HOH C 20 620 44 HOH HOH . G 4 HOH C 21 621 106 HOH HOH . G 4 HOH C 22 622 39 HOH HOH . G 4 HOH C 23 623 6 HOH HOH . G 4 HOH C 24 624 154 HOH HOH . G 4 HOH C 25 625 30 HOH HOH . G 4 HOH C 26 626 124 HOH HOH . G 4 HOH C 27 627 3 HOH HOH . G 4 HOH C 28 628 9 HOH HOH . G 4 HOH C 29 629 140 HOH HOH . G 4 HOH C 30 630 61 HOH HOH . G 4 HOH C 31 631 145 HOH HOH . G 4 HOH C 32 632 97 HOH HOH . G 4 HOH C 33 633 116 HOH HOH . G 4 HOH C 34 634 43 HOH HOH . G 4 HOH C 35 635 22 HOH HOH . G 4 HOH C 36 636 126 HOH HOH . G 4 HOH C 37 637 152 HOH HOH . G 4 HOH C 38 638 20 HOH HOH . G 4 HOH C 39 639 119 HOH HOH . G 4 HOH C 40 640 13 HOH HOH . G 4 HOH C 41 641 148 HOH HOH . G 4 HOH C 42 642 110 HOH HOH . G 4 HOH C 43 643 48 HOH HOH . G 4 HOH C 44 644 26 HOH HOH . G 4 HOH C 45 645 8 HOH HOH . G 4 HOH C 46 646 18 HOH HOH . G 4 HOH C 47 647 49 HOH HOH . G 4 HOH C 48 648 146 HOH HOH . G 4 HOH C 49 649 19 HOH HOH . G 4 HOH C 50 650 33 HOH HOH . G 4 HOH C 51 651 90 HOH HOH . G 4 HOH C 52 652 63 HOH HOH . G 4 HOH C 53 653 60 HOH HOH . G 4 HOH C 54 654 93 HOH HOH . G 4 HOH C 55 655 21 HOH HOH . G 4 HOH C 56 656 131 HOH HOH . G 4 HOH C 57 657 144 HOH HOH . G 4 HOH C 58 658 92 HOH HOH . G 4 HOH C 59 659 25 HOH HOH . G 4 HOH C 60 660 104 HOH HOH . G 4 HOH C 61 661 7 HOH HOH . G 4 HOH C 62 662 64 HOH HOH . G 4 HOH C 63 663 2 HOH HOH . G 4 HOH C 64 664 72 HOH HOH . G 4 HOH C 65 665 114 HOH HOH . G 4 HOH C 66 666 130 HOH HOH . G 4 HOH C 67 667 134 HOH HOH . G 4 HOH C 68 668 17 HOH HOH . G 4 HOH C 69 669 159 HOH HOH . G 4 HOH C 70 670 11 HOH HOH . G 4 HOH C 71 671 117 HOH HOH . G 4 HOH C 72 672 57 HOH HOH . G 4 HOH C 73 673 156 HOH HOH . G 4 HOH C 74 674 157 HOH HOH . G 4 HOH C 75 675 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 65D . . . D 3 -5.758 16.354 39.948 1 14.21 ? O3 65D 501 C 1 HETATM 2 C C4 65D . . . D 3 -10.633 21.934 44.264 1 51.48 ? C4 65D 501 C 1 HETATM 3 C C5 65D . . . D 3 -9.893 20.596 44.419 1 52.21 ? C5 65D 501 C 1 HETATM 4 O O4 65D . . . D 3 -3.337 17.373 40.976 1 14.18 ? O4 65D 501 C 1 HETATM 5 C C6 65D . . . D 3 -9.07 20.406 45.71 1 51.57 ? C6 65D 501 C 1 HETATM 6 C C7 65D . . . D 3 -7.649 19.855 45.552 1 48.22 ? C7 65D 501 C 1 HETATM 7 C C8 65D . . . D 3 -5.834 20.17 44.007 1 27 ? C8 65D 501 C 1 HETATM 8 C C9 65D . . . D 3 -5.795 19.001 43.08 1 20.98 ? C9 65D 501 C 1 HETATM 9 C C10 65D . . . D 3 -4.587 18.684 42.484 1 16.77 ? C10 65D 501 C 1 HETATM 10 C C11 65D . . . D 3 -4.536 17.714 41.504 1 15.42 ? C11 65D 501 C 1 HETATM 11 C C12 65D . . . D 3 -5.694 17.059 41.105 1 15.05 ? C12 65D 501 C 1 HETATM 12 C C13 65D . . . D 3 -6.877 17.29 41.794 1 17.01 ? C13 65D 501 C 1 HETATM 13 C C14 65D . . . D 3 -6.932 18.256 42.778 1 19.21 ? C14 65D 501 C 1 HETATM 14 O O1 65D . . . D 3 -4.855 20.731 44.45 1 28.89 ? O1 65D 501 C 1 HETATM 15 O O2 65D . . . D 3 -7.955 16.563 41.457 1 15.93 ? O2 65D 501 C 1 HETATM 16 O O 65D . . . D 3 -7.07 20.477 44.371 1 35 ? O 65D 501 C 1 HETATM 17 C C3 65D . . . D 3 -11.945 22.033 45.044 1 54.32 ? C3 65D 501 C 1 HETATM 18 C C2 65D . . . D 3 -11.827 22.563 46.491 1 60.73 ? C2 65D 501 C 1 HETATM 19 C C1 65D . . . D 3 -13.056 22.292 47.426 1 63.98 ? C1 65D 501 C 1 HETATM 20 C C 65D . . . D 3 -13.361 23.302 48.564 1 59.48 ? C 65D 501 C 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #