data_5HNV # _model_server_result.job_id 9qN2jw-AZCiACxomgGpixg _model_server_result.datetime_utc '2024-11-05 00:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HNV # _exptl.entry_id 5HNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HNV _cell.length_a 65.753 _cell.length_b 78.282 _cell.length_c 59.162 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O3G ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 B O2B ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 B O2A ATP . A ATP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 C MG MG . A MG 402 1_555 E O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 C MG MG . A MG 402 1_555 E O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 5HNV _atom_sites.fract_transf_matrix[1][1] 0.015208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 MG A 1 402 1 MG MG . D 4 GOL A 1 403 1 GOL GOL . E 5 HOH A 1 501 203 HOH HOH . E 5 HOH A 2 502 195 HOH HOH . E 5 HOH A 3 503 263 HOH HOH . E 5 HOH A 4 504 90 HOH HOH . E 5 HOH A 5 505 174 HOH HOH . E 5 HOH A 6 506 173 HOH HOH . E 5 HOH A 7 507 215 HOH HOH . E 5 HOH A 8 508 104 HOH HOH . E 5 HOH A 9 509 115 HOH HOH . E 5 HOH A 10 510 224 HOH HOH . E 5 HOH A 11 511 194 HOH HOH . E 5 HOH A 12 512 161 HOH HOH . E 5 HOH A 13 513 89 HOH HOH . E 5 HOH A 14 514 108 HOH HOH . E 5 HOH A 15 515 185 HOH HOH . E 5 HOH A 16 516 175 HOH HOH . E 5 HOH A 17 517 40 HOH HOH . E 5 HOH A 18 518 259 HOH HOH . E 5 HOH A 19 519 12 HOH HOH . E 5 HOH A 20 520 3 HOH HOH . E 5 HOH A 21 521 41 HOH HOH . E 5 HOH A 22 522 191 HOH HOH . E 5 HOH A 23 523 184 HOH HOH . E 5 HOH A 24 524 83 HOH HOH . E 5 HOH A 25 525 37 HOH HOH . E 5 HOH A 26 526 78 HOH HOH . E 5 HOH A 27 527 186 HOH HOH . E 5 HOH A 28 528 111 HOH HOH . E 5 HOH A 29 529 9 HOH HOH . E 5 HOH A 30 530 197 HOH HOH . E 5 HOH A 31 531 139 HOH HOH . E 5 HOH A 32 532 158 HOH HOH . E 5 HOH A 33 533 24 HOH HOH . E 5 HOH A 34 534 227 HOH HOH . E 5 HOH A 35 535 20 HOH HOH . E 5 HOH A 36 536 35 HOH HOH . E 5 HOH A 37 537 86 HOH HOH . E 5 HOH A 38 538 70 HOH HOH . E 5 HOH A 39 539 31 HOH HOH . E 5 HOH A 40 540 110 HOH HOH . E 5 HOH A 41 541 45 HOH HOH . E 5 HOH A 42 542 234 HOH HOH . E 5 HOH A 43 543 255 HOH HOH . E 5 HOH A 44 544 180 HOH HOH . E 5 HOH A 45 545 98 HOH HOH . E 5 HOH A 46 546 192 HOH HOH . E 5 HOH A 47 547 21 HOH HOH . E 5 HOH A 48 548 33 HOH HOH . E 5 HOH A 49 549 143 HOH HOH . E 5 HOH A 50 550 66 HOH HOH . E 5 HOH A 51 551 207 HOH HOH . E 5 HOH A 52 552 62 HOH HOH . E 5 HOH A 53 553 163 HOH HOH . E 5 HOH A 54 554 232 HOH HOH . E 5 HOH A 55 555 25 HOH HOH . E 5 HOH A 56 556 23 HOH HOH . E 5 HOH A 57 557 71 HOH HOH . E 5 HOH A 58 558 202 HOH HOH . E 5 HOH A 59 559 148 HOH HOH . E 5 HOH A 60 560 198 HOH HOH . E 5 HOH A 61 561 92 HOH HOH . E 5 HOH A 62 562 189 HOH HOH . E 5 HOH A 63 563 181 HOH HOH . E 5 HOH A 64 564 15 HOH HOH . E 5 HOH A 65 565 6 HOH HOH . E 5 HOH A 66 566 164 HOH HOH . E 5 HOH A 67 567 182 HOH HOH . E 5 HOH A 68 568 178 HOH HOH . E 5 HOH A 69 569 59 HOH HOH . E 5 HOH A 70 570 176 HOH HOH . E 5 HOH A 71 571 47 HOH HOH . E 5 HOH A 72 572 52 HOH HOH . E 5 HOH A 73 573 61 HOH HOH . E 5 HOH A 74 574 251 HOH HOH . E 5 HOH A 75 575 26 HOH HOH . E 5 HOH A 76 576 165 HOH HOH . E 5 HOH A 77 577 250 HOH HOH . E 5 HOH A 78 578 5 HOH HOH . E 5 HOH A 79 579 74 HOH HOH . E 5 HOH A 80 580 44 HOH HOH . E 5 HOH A 81 581 170 HOH HOH . E 5 HOH A 82 582 252 HOH HOH . E 5 HOH A 83 583 79 HOH HOH . E 5 HOH A 84 584 265 HOH HOH . E 5 HOH A 85 585 38 HOH HOH . E 5 HOH A 86 586 29 HOH HOH . E 5 HOH A 87 587 209 HOH HOH . E 5 HOH A 88 588 179 HOH HOH . E 5 HOH A 89 589 42 HOH HOH . E 5 HOH A 90 590 196 HOH HOH . E 5 HOH A 91 591 22 HOH HOH . E 5 HOH A 92 592 95 HOH HOH . E 5 HOH A 93 593 166 HOH HOH . E 5 HOH A 94 594 65 HOH HOH . E 5 HOH A 95 595 211 HOH HOH . E 5 HOH A 96 596 153 HOH HOH . E 5 HOH A 97 597 200 HOH HOH . E 5 HOH A 98 598 169 HOH HOH . E 5 HOH A 99 599 63 HOH HOH . E 5 HOH A 100 600 30 HOH HOH . E 5 HOH A 101 601 231 HOH HOH . E 5 HOH A 102 602 124 HOH HOH . E 5 HOH A 103 603 50 HOH HOH . E 5 HOH A 104 604 218 HOH HOH . E 5 HOH A 105 605 120 HOH HOH . E 5 HOH A 106 606 228 HOH HOH . E 5 HOH A 107 607 28 HOH HOH . E 5 HOH A 108 608 149 HOH HOH . E 5 HOH A 109 609 152 HOH HOH . E 5 HOH A 110 610 140 HOH HOH . E 5 HOH A 111 611 222 HOH HOH . E 5 HOH A 112 612 130 HOH HOH . E 5 HOH A 113 613 55 HOH HOH . E 5 HOH A 114 614 73 HOH HOH . E 5 HOH A 115 615 129 HOH HOH . E 5 HOH A 116 616 210 HOH HOH . E 5 HOH A 117 617 48 HOH HOH . E 5 HOH A 118 618 11 HOH HOH . E 5 HOH A 119 619 1 HOH HOH . E 5 HOH A 120 620 27 HOH HOH . E 5 HOH A 121 621 241 HOH HOH . E 5 HOH A 122 622 221 HOH HOH . E 5 HOH A 123 623 75 HOH HOH . E 5 HOH A 124 624 223 HOH HOH . E 5 HOH A 125 625 14 HOH HOH . E 5 HOH A 126 626 18 HOH HOH . E 5 HOH A 127 627 199 HOH HOH . E 5 HOH A 128 628 97 HOH HOH . E 5 HOH A 129 629 107 HOH HOH . E 5 HOH A 130 630 233 HOH HOH . E 5 HOH A 131 631 43 HOH HOH . E 5 HOH A 132 632 267 HOH HOH . E 5 HOH A 133 633 32 HOH HOH . E 5 HOH A 134 634 201 HOH HOH . E 5 HOH A 135 635 188 HOH HOH . E 5 HOH A 136 636 82 HOH HOH . E 5 HOH A 137 637 60 HOH HOH . E 5 HOH A 138 638 177 HOH HOH . E 5 HOH A 139 639 121 HOH HOH . E 5 HOH A 140 640 146 HOH HOH . E 5 HOH A 141 641 205 HOH HOH . E 5 HOH A 142 642 2 HOH HOH . E 5 HOH A 143 643 266 HOH HOH . E 5 HOH A 144 644 36 HOH HOH . E 5 HOH A 145 645 91 HOH HOH . E 5 HOH A 146 646 213 HOH HOH . E 5 HOH A 147 647 162 HOH HOH . E 5 HOH A 148 648 247 HOH HOH . E 5 HOH A 149 649 235 HOH HOH . E 5 HOH A 150 650 100 HOH HOH . E 5 HOH A 151 651 57 HOH HOH . E 5 HOH A 152 652 88 HOH HOH . E 5 HOH A 153 653 103 HOH HOH . E 5 HOH A 154 654 93 HOH HOH . E 5 HOH A 155 655 260 HOH HOH . E 5 HOH A 156 656 19 HOH HOH . E 5 HOH A 157 657 172 HOH HOH . E 5 HOH A 158 658 39 HOH HOH . E 5 HOH A 159 659 56 HOH HOH . E 5 HOH A 160 660 242 HOH HOH . E 5 HOH A 161 661 138 HOH HOH . E 5 HOH A 162 662 17 HOH HOH . E 5 HOH A 163 663 84 HOH HOH . E 5 HOH A 164 664 214 HOH HOH . E 5 HOH A 165 665 87 HOH HOH . E 5 HOH A 166 666 85 HOH HOH . E 5 HOH A 167 667 240 HOH HOH . E 5 HOH A 168 668 226 HOH HOH . E 5 HOH A 169 669 187 HOH HOH . E 5 HOH A 170 670 204 HOH HOH . E 5 HOH A 171 671 168 HOH HOH . E 5 HOH A 172 672 157 HOH HOH . E 5 HOH A 173 673 245 HOH HOH . E 5 HOH A 174 674 81 HOH HOH . E 5 HOH A 175 675 132 HOH HOH . E 5 HOH A 176 676 119 HOH HOH . E 5 HOH A 177 677 34 HOH HOH . E 5 HOH A 178 678 133 HOH HOH . E 5 HOH A 179 679 154 HOH HOH . E 5 HOH A 180 680 109 HOH HOH . E 5 HOH A 181 681 160 HOH HOH . E 5 HOH A 182 682 219 HOH HOH . E 5 HOH A 183 683 7 HOH HOH . E 5 HOH A 184 684 225 HOH HOH . E 5 HOH A 185 685 53 HOH HOH . E 5 HOH A 186 686 258 HOH HOH . E 5 HOH A 187 687 141 HOH HOH . E 5 HOH A 188 688 67 HOH HOH . E 5 HOH A 189 689 261 HOH HOH . E 5 HOH A 190 690 253 HOH HOH . E 5 HOH A 191 691 58 HOH HOH . E 5 HOH A 192 692 190 HOH HOH . E 5 HOH A 193 693 49 HOH HOH . E 5 HOH A 194 694 106 HOH HOH . E 5 HOH A 195 695 8 HOH HOH . E 5 HOH A 196 696 46 HOH HOH . E 5 HOH A 197 697 112 HOH HOH . E 5 HOH A 198 698 167 HOH HOH . E 5 HOH A 199 699 155 HOH HOH . E 5 HOH A 200 700 4 HOH HOH . E 5 HOH A 201 701 134 HOH HOH . E 5 HOH A 202 702 114 HOH HOH . E 5 HOH A 203 703 238 HOH HOH . E 5 HOH A 204 704 16 HOH HOH . E 5 HOH A 205 705 159 HOH HOH . E 5 HOH A 206 706 116 HOH HOH . E 5 HOH A 207 707 127 HOH HOH . E 5 HOH A 208 708 239 HOH HOH . E 5 HOH A 209 709 135 HOH HOH . E 5 HOH A 210 710 105 HOH HOH . E 5 HOH A 211 711 229 HOH HOH . E 5 HOH A 212 712 142 HOH HOH . E 5 HOH A 213 713 72 HOH HOH . E 5 HOH A 214 714 102 HOH HOH . E 5 HOH A 215 715 151 HOH HOH . E 5 HOH A 216 716 68 HOH HOH . E 5 HOH A 217 717 144 HOH HOH . E 5 HOH A 218 718 113 HOH HOH . E 5 HOH A 219 719 244 HOH HOH . E 5 HOH A 220 720 193 HOH HOH . E 5 HOH A 221 721 99 HOH HOH . E 5 HOH A 222 722 236 HOH HOH . E 5 HOH A 223 723 254 HOH HOH . E 5 HOH A 224 724 13 HOH HOH . E 5 HOH A 225 725 80 HOH HOH . E 5 HOH A 226 726 136 HOH HOH . E 5 HOH A 227 727 256 HOH HOH . E 5 HOH A 228 728 123 HOH HOH . E 5 HOH A 229 729 51 HOH HOH . E 5 HOH A 230 730 237 HOH HOH . E 5 HOH A 231 731 220 HOH HOH . E 5 HOH A 232 732 126 HOH HOH . E 5 HOH A 233 733 183 HOH HOH . E 5 HOH A 234 734 206 HOH HOH . E 5 HOH A 235 735 64 HOH HOH . E 5 HOH A 236 736 171 HOH HOH . E 5 HOH A 237 737 96 HOH HOH . E 5 HOH A 238 738 249 HOH HOH . E 5 HOH A 239 739 212 HOH HOH . E 5 HOH A 240 740 262 HOH HOH . E 5 HOH A 241 741 147 HOH HOH . E 5 HOH A 242 742 248 HOH HOH . E 5 HOH A 243 743 208 HOH HOH . E 5 HOH A 244 744 125 HOH HOH . E 5 HOH A 245 745 137 HOH HOH . E 5 HOH A 246 746 145 HOH HOH . E 5 HOH A 247 747 131 HOH HOH . E 5 HOH A 248 748 69 HOH HOH . E 5 HOH A 249 749 117 HOH HOH . E 5 HOH A 250 750 128 HOH HOH . E 5 HOH A 251 751 216 HOH HOH . E 5 HOH A 252 752 246 HOH HOH . E 5 HOH A 253 753 217 HOH HOH . E 5 HOH A 254 754 101 HOH HOH . E 5 HOH A 255 755 243 HOH HOH . E 5 HOH A 256 756 264 HOH HOH . E 5 HOH A 257 757 76 HOH HOH . E 5 HOH A 258 758 94 HOH HOH . E 5 HOH A 259 759 10 HOH HOH . E 5 HOH A 260 760 230 HOH HOH . E 5 HOH A 261 761 150 HOH HOH . E 5 HOH A 262 762 122 HOH HOH . E 5 HOH A 263 763 77 HOH HOH . E 5 HOH A 264 764 257 HOH HOH . E 5 HOH A 265 765 54 HOH HOH . E 5 HOH A 266 766 118 HOH HOH . E 5 HOH A 267 767 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 13.694 102.861 64.403 1 30.8 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 4 13.641 104.268 64.621 1 33.09 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 4 15.021 102.496 63.771 1 30.57 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 4 15.271 101.146 64.074 1 32.27 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 4 14.893 102.624 62.276 1 36.86 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 4 16.138 102.382 61.598 1 44.96 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #