data_5HNW # _model_server_result.job_id oYboXbiBWmsF6c9XwunwrQ _model_server_result.datetime_utc '2025-02-27 02:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 5HNW # _exptl.entry_id 5HNW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O LEU 21 K LEU 21 1_555 C N GLY 23 K GLY 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 C CD1 TYR 100 K TYR 100 1_555 C OE2 GLU 327 K GLU 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale3 C OE2 GLU 252 K GLU 252 1_555 C CD1 LEU 264 K LEU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 C CD1 ILE 316 K ILE 316 1_555 C CG2 THR 331 K THR 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? metalc ? metalc1 D MG MG . A MG 501 1_555 E O1G GTP . A GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 C OG1 THR 108 K THR 108 1_555 H MG MG . K MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc3 H MG MG . K MG 401 1_555 I O1B ANP . K ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 H MG MG . K MG 401 1_555 I O2G ANP . K ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5HNW _atom_sites.fract_transf_matrix[1][1] 0.001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 501 501 MG MG . E 5 GTP A 1 502 500 GTP GTP . F 6 GDP B 1 901 901 GDP GDP . G 7 TA1 B 1 902 902 TA1 TA1 . H 4 MG K 1 401 350 MG MG . I 8 ANP K 1 402 351 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 8 398.329 375.673 620.208 1 0 ? PG ANP 402 K 1 HETATM 2 O O1G ANP . . . I 8 399.747 375.437 620.646 1 0 ? O1G ANP 402 K 1 HETATM 3 O O2G ANP . . . I 8 398.247 375.387 618.779 1 0 ? O2G ANP 402 K 1 HETATM 4 O O3G ANP . . . I 8 398.038 377.131 620.375 1 0 ? O3G ANP 402 K 1 HETATM 5 P PB ANP . . . I 8 395.822 374.241 620.482 1 0 ? PB ANP 402 K 1 HETATM 6 O O1B ANP . . . I 8 395.704 373.51 619.272 1 0 ? O1B ANP 402 K 1 HETATM 7 O O2B ANP . . . I 8 394.862 374.379 621.574 1 0 ? O2B ANP 402 K 1 HETATM 8 N N3B ANP . . . I 8 397.375 374.521 620.878 1 0 ? N3B ANP 402 K 1 HETATM 9 P PA ANP . . . I 8 395.769 371.319 620.39 1 0 ? PA ANP 402 K 1 HETATM 10 O O1A ANP . . . I 8 396.995 370.499 620.271 1 0 ? O1A ANP 402 K 1 HETATM 11 O O2A ANP . . . I 8 394.413 370.781 620.268 1 0 ? O2A ANP 402 K 1 HETATM 12 O O3A ANP . . . I 8 395.924 372.747 621.169 1 0 ? O3A ANP 402 K 1 HETATM 13 O O5' ANP . . . I 8 395.702 370.401 621.703 1 0 ? O5' ANP 402 K 1 HETATM 14 C C5' ANP . . . I 8 395.72 370.725 623.09 1 0 ? C5' ANP 402 K 1 HETATM 15 C C4' ANP . . . I 8 396.215 369.358 623.714 1 0 ? C4' ANP 402 K 1 HETATM 16 O O4' ANP . . . I 8 395.118 368.711 624.487 1 0 ? O4' ANP 402 K 1 HETATM 17 C C3' ANP . . . I 8 396.586 368.185 622.774 1 0 ? C3' ANP 402 K 1 HETATM 18 O O3' ANP . . . I 8 397.493 367.295 623.427 1 0 ? O3' ANP 402 K 1 HETATM 19 C C2' ANP . . . I 8 395.208 367.579 622.451 1 0 ? C2' ANP 402 K 1 HETATM 20 O O2' ANP . . . I 8 395.34 366.216 621.961 1 0 ? O2' ANP 402 K 1 HETATM 21 C C1' ANP . . . I 8 394.504 367.659 623.777 1 0 ? C1' ANP 402 K 1 HETATM 22 N N9 ANP . . . I 8 393.032 367.916 623.661 1 0 ? N9 ANP 402 K 1 HETATM 23 C C8 ANP . . . I 8 392.392 369.062 623.334 1 0 ? C8 ANP 402 K 1 HETATM 24 N N7 ANP . . . I 8 391.08 368.936 623.341 1 0 ? N7 ANP 402 K 1 HETATM 25 C C5 ANP . . . I 8 390.82 367.662 623.678 1 0 ? C5 ANP 402 K 1 HETATM 26 C C6 ANP . . . I 8 389.588 366.972 623.854 1 0 ? C6 ANP 402 K 1 HETATM 27 N N6 ANP . . . I 8 388.422 367.426 623.711 1 0 ? N6 ANP 402 K 1 HETATM 28 N N1 ANP . . . I 8 389.773 365.645 624.211 1 0 ? N1 ANP 402 K 1 HETATM 29 C C2 ANP . . . I 8 391.01 365.056 624.395 1 0 ? C2 ANP 402 K 1 HETATM 30 N N3 ANP . . . I 8 392.147 365.702 624.242 1 0 ? N3 ANP 402 K 1 HETATM 31 C C4 ANP . . . I 8 392.011 367.005 623.891 1 0 ? C4 ANP 402 K 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #