data_5HOF # _model_server_result.job_id gr9pXfrXGYr5AHSK3grDIA _model_server_result.datetime_utc '2024-10-19 15:40:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 5HOF # _exptl.entry_id 5HOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HOF _cell.length_a 70.459 _cell.length_b 87.786 _cell.length_c 129.908 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AHR AHR C1 O1 . O5 HO5 . sing 2 ? 2 3 2 AHR AHR C1 O1 . O5 HO5 . sing 3 ? 2 4 3 AHR AHR C1 O1 . O5 HO5 . sing 4 ? 2 5 4 AHR AHR C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B AHR 1 B 1 AHR F 1 XYT 2 n B AHR 2 B 2 AHR F 1 XYT 2 n B AHR 3 B 3 AHR F 1 XYT 2 n B AHR 4 B 4 AHR F 1 XYT 2 n B AHR 5 B 5 AHR F 1 XYT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O5 AHR . B AHR 1 1_555 B C1 AHR . B AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B O5 AHR . B AHR 2 1_555 B C1 AHR . B AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B O5 AHR . B AHR 3 1_555 B C1 AHR . B AHR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale4 B O5 AHR . B AHR 4 1_555 B C1 AHR . B AHR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A O SER 649 A SER 649 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc2 A OD1 ASP 651 A ASP 651 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O ILE 686 A ILE 686 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A O LYS 688 A LYS 688 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc5 A OD1 ASP 826 A ASP 826 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 A OE2 GLU 827 A GLU 827 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 C CA CA . A CA 901 1_555 H O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc8 C CA CA . A CA 901 1_555 H O HOH . A HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc9 C CA CA . A CA 901 1_555 H O HOH . A HOH 1020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc10 C CA CA . A CA 901 1_555 H O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc11 C CA CA . A CA 901 1_555 H O HOH . A HOH 1040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc12 C CA CA . A CA 901 1_555 H O HOH . A HOH 1085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 376 n n C C2 TRS sing 377 n n C C3 TRS sing 378 n n C N TRS sing 379 n n C1 O1 TRS sing 380 n n C1 H11 TRS sing 381 n n C1 H12 TRS sing 382 n n C2 O2 TRS sing 383 n n C2 H21 TRS sing 384 n n C2 H22 TRS sing 385 n n C3 O3 TRS sing 386 n n C3 H31 TRS sing 387 n n C3 H32 TRS sing 388 n n N HN1 TRS sing 389 n n N HN2 TRS sing 390 n n N HN3 TRS sing 391 n n O1 HO1 TRS sing 392 n n O2 HO2 TRS sing 393 n n O3 HO3 TRS sing 394 n n # _atom_sites.entry_id 5HOF _atom_sites.fract_transf_matrix[1][1] 0.014193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 901 1 CA CA . D 3 CA A 1 902 1 CA CA . E 4 TRS A 1 903 1 TRS TRS . F 5 PEG A 1 904 1 PEG PEG . G 6 ACT A 1 905 1 ACT ACT . H 7 HOH A 1 1001 58 HOH HOH . H 7 HOH A 2 1002 60 HOH HOH . H 7 HOH A 3 1003 10 HOH HOH . H 7 HOH A 4 1004 122 HOH HOH . H 7 HOH A 5 1005 22 HOH HOH . H 7 HOH A 6 1006 139 HOH HOH . H 7 HOH A 7 1007 51 HOH HOH . H 7 HOH A 8 1008 104 HOH HOH . H 7 HOH A 9 1009 142 HOH HOH . H 7 HOH A 10 1010 130 HOH HOH . H 7 HOH A 11 1011 81 HOH HOH . H 7 HOH A 12 1012 84 HOH HOH . H 7 HOH A 13 1013 34 HOH HOH . H 7 HOH A 14 1014 128 HOH HOH . H 7 HOH A 15 1015 2 HOH HOH . H 7 HOH A 16 1016 66 HOH HOH . H 7 HOH A 17 1017 55 HOH HOH . H 7 HOH A 18 1018 31 HOH HOH . H 7 HOH A 19 1019 134 HOH HOH . H 7 HOH A 20 1020 57 HOH HOH . H 7 HOH A 21 1021 89 HOH HOH . H 7 HOH A 22 1022 27 HOH HOH . H 7 HOH A 23 1023 147 HOH HOH . H 7 HOH A 24 1024 99 HOH HOH . H 7 HOH A 25 1025 144 HOH HOH . H 7 HOH A 26 1026 108 HOH HOH . H 7 HOH A 27 1027 71 HOH HOH . H 7 HOH A 28 1028 61 HOH HOH . H 7 HOH A 29 1029 26 HOH HOH . H 7 HOH A 30 1030 68 HOH HOH . H 7 HOH A 31 1031 15 HOH HOH . H 7 HOH A 32 1032 98 HOH HOH . H 7 HOH A 33 1033 138 HOH HOH . H 7 HOH A 34 1034 91 HOH HOH . H 7 HOH A 35 1035 157 HOH HOH . H 7 HOH A 36 1036 25 HOH HOH . H 7 HOH A 37 1037 76 HOH HOH . H 7 HOH A 38 1038 28 HOH HOH . H 7 HOH A 39 1039 105 HOH HOH . H 7 HOH A 40 1040 35 HOH HOH . H 7 HOH A 41 1041 33 HOH HOH . H 7 HOH A 42 1042 53 HOH HOH . H 7 HOH A 43 1043 64 HOH HOH . H 7 HOH A 44 1044 47 HOH HOH . H 7 HOH A 45 1045 152 HOH HOH . H 7 HOH A 46 1046 4 HOH HOH . H 7 HOH A 47 1047 37 HOH HOH . H 7 HOH A 48 1048 11 HOH HOH . H 7 HOH A 49 1049 42 HOH HOH . H 7 HOH A 50 1050 70 HOH HOH . H 7 HOH A 51 1051 140 HOH HOH . H 7 HOH A 52 1052 96 HOH HOH . H 7 HOH A 53 1053 150 HOH HOH . H 7 HOH A 54 1054 19 HOH HOH . H 7 HOH A 55 1055 13 HOH HOH . H 7 HOH A 56 1056 83 HOH HOH . H 7 HOH A 57 1057 151 HOH HOH . H 7 HOH A 58 1058 6 HOH HOH . H 7 HOH A 59 1059 132 HOH HOH . H 7 HOH A 60 1060 1 HOH HOH . H 7 HOH A 61 1061 74 HOH HOH . H 7 HOH A 62 1062 106 HOH HOH . H 7 HOH A 63 1063 43 HOH HOH . H 7 HOH A 64 1064 116 HOH HOH . H 7 HOH A 65 1065 38 HOH HOH . H 7 HOH A 66 1066 24 HOH HOH . H 7 HOH A 67 1067 94 HOH HOH . H 7 HOH A 68 1068 93 HOH HOH . H 7 HOH A 69 1069 75 HOH HOH . H 7 HOH A 70 1070 30 HOH HOH . H 7 HOH A 71 1071 103 HOH HOH . H 7 HOH A 72 1072 86 HOH HOH . H 7 HOH A 73 1073 62 HOH HOH . H 7 HOH A 74 1074 20 HOH HOH . H 7 HOH A 75 1075 113 HOH HOH . H 7 HOH A 76 1076 100 HOH HOH . H 7 HOH A 77 1077 111 HOH HOH . H 7 HOH A 78 1078 8 HOH HOH . H 7 HOH A 79 1079 149 HOH HOH . H 7 HOH A 80 1080 133 HOH HOH . H 7 HOH A 81 1081 29 HOH HOH . H 7 HOH A 82 1082 44 HOH HOH . H 7 HOH A 83 1083 12 HOH HOH . H 7 HOH A 84 1084 158 HOH HOH . H 7 HOH A 85 1085 121 HOH HOH . H 7 HOH A 86 1086 23 HOH HOH . H 7 HOH A 87 1087 92 HOH HOH . H 7 HOH A 88 1088 39 HOH HOH . H 7 HOH A 89 1089 17 HOH HOH . H 7 HOH A 90 1090 117 HOH HOH . H 7 HOH A 91 1091 69 HOH HOH . H 7 HOH A 92 1092 41 HOH HOH . H 7 HOH A 93 1093 52 HOH HOH . H 7 HOH A 94 1094 156 HOH HOH . H 7 HOH A 95 1095 48 HOH HOH . H 7 HOH A 96 1096 18 HOH HOH . H 7 HOH A 97 1097 136 HOH HOH . H 7 HOH A 98 1098 110 HOH HOH . H 7 HOH A 99 1099 77 HOH HOH . H 7 HOH A 100 1100 65 HOH HOH . H 7 HOH A 101 1101 155 HOH HOH . H 7 HOH A 102 1102 40 HOH HOH . H 7 HOH A 103 1103 56 HOH HOH . H 7 HOH A 104 1104 129 HOH HOH . H 7 HOH A 105 1105 14 HOH HOH . H 7 HOH A 106 1106 54 HOH HOH . H 7 HOH A 107 1107 143 HOH HOH . H 7 HOH A 108 1108 109 HOH HOH . H 7 HOH A 109 1109 88 HOH HOH . H 7 HOH A 110 1110 3 HOH HOH . H 7 HOH A 111 1111 85 HOH HOH . H 7 HOH A 112 1112 73 HOH HOH . H 7 HOH A 113 1113 49 HOH HOH . H 7 HOH A 114 1114 72 HOH HOH . H 7 HOH A 115 1115 82 HOH HOH . H 7 HOH A 116 1116 78 HOH HOH . H 7 HOH A 117 1117 115 HOH HOH . H 7 HOH A 118 1118 46 HOH HOH . H 7 HOH A 119 1119 7 HOH HOH . H 7 HOH A 120 1120 87 HOH HOH . H 7 HOH A 121 1121 80 HOH HOH . H 7 HOH A 122 1122 67 HOH HOH . H 7 HOH A 123 1123 118 HOH HOH . H 7 HOH A 124 1124 137 HOH HOH . H 7 HOH A 125 1125 120 HOH HOH . H 7 HOH A 126 1126 135 HOH HOH . H 7 HOH A 127 1127 131 HOH HOH . H 7 HOH A 128 1128 36 HOH HOH . H 7 HOH A 129 1129 153 HOH HOH . H 7 HOH A 130 1130 124 HOH HOH . H 7 HOH A 131 1131 59 HOH HOH . H 7 HOH A 132 1132 148 HOH HOH . H 7 HOH A 133 1133 141 HOH HOH . H 7 HOH A 134 1134 45 HOH HOH . H 7 HOH A 135 1135 126 HOH HOH . H 7 HOH A 136 1136 16 HOH HOH . H 7 HOH A 137 1137 21 HOH HOH . H 7 HOH A 138 1138 146 HOH HOH . H 7 HOH A 139 1139 123 HOH HOH . H 7 HOH A 140 1140 125 HOH HOH . H 7 HOH A 141 1141 154 HOH HOH . H 7 HOH A 142 1142 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 4 21.394 107.661 145.448 1 30.36 ? C TRS 903 A 1 HETATM 2 C C1 TRS . . . E 4 22.124 107.78 146.776 1 30.63 ? C1 TRS 903 A 1 HETATM 3 C C2 TRS . . . E 4 19.993 108.263 145.541 1 30.09 ? C2 TRS 903 A 1 HETATM 4 C C3 TRS . . . E 4 21.332 106.214 144.926 1 29.68 ? C3 TRS 903 A 1 HETATM 5 N N TRS . . . E 4 22.153 108.506 144.501 1 31.86 ? N TRS 903 A 1 HETATM 6 O O1 TRS . . . E 4 21.792 106.697 147.643 1 31.49 ? O1 TRS 903 A 1 HETATM 7 O O2 TRS . . . E 4 19.504 108.586 144.23 1 30.31 ? O2 TRS 903 A 1 HETATM 8 O O3 TRS . . . E 4 22.617 105.574 144.768 1 28.63 ? O3 TRS 903 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #