data_5HOL # _model_server_result.job_id kqceIGjlXRo7-LvH-NYjJQ _model_server_result.datetime_utc '2025-02-17 15:07:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5HOL # _exptl.entry_id 5HOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HOL _cell.length_a 31.3 _cell.length_b 66.53 _cell.length_c 89.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 5HOL _atom_sites.fract_transf_matrix[1][1] 0.031949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 201 1 APR APR . C 3 HOH A 1 301 70 HOH HOH . C 3 HOH A 2 302 182 HOH HOH . C 3 HOH A 3 303 9 HOH HOH . C 3 HOH A 4 304 92 HOH HOH . C 3 HOH A 5 305 75 HOH HOH . C 3 HOH A 6 306 56 HOH HOH . C 3 HOH A 7 307 133 HOH HOH . C 3 HOH A 8 308 79 HOH HOH . C 3 HOH A 9 309 43 HOH HOH . C 3 HOH A 10 310 2 HOH HOH . C 3 HOH A 11 311 30 HOH HOH . C 3 HOH A 12 312 130 HOH HOH . C 3 HOH A 13 313 82 HOH HOH . C 3 HOH A 14 314 77 HOH HOH . C 3 HOH A 15 315 6 HOH HOH . C 3 HOH A 16 316 186 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 84 HOH HOH . C 3 HOH A 19 319 146 HOH HOH . C 3 HOH A 20 320 156 HOH HOH . C 3 HOH A 21 321 158 HOH HOH . C 3 HOH A 22 322 45 HOH HOH . C 3 HOH A 23 323 32 HOH HOH . C 3 HOH A 24 324 107 HOH HOH . C 3 HOH A 25 325 24 HOH HOH . C 3 HOH A 26 326 91 HOH HOH . C 3 HOH A 27 327 50 HOH HOH . C 3 HOH A 28 328 140 HOH HOH . C 3 HOH A 29 329 127 HOH HOH . C 3 HOH A 30 330 73 HOH HOH . C 3 HOH A 31 331 105 HOH HOH . C 3 HOH A 32 332 67 HOH HOH . C 3 HOH A 33 333 51 HOH HOH . C 3 HOH A 34 334 63 HOH HOH . C 3 HOH A 35 335 93 HOH HOH . C 3 HOH A 36 336 187 HOH HOH . C 3 HOH A 37 337 65 HOH HOH . C 3 HOH A 38 338 106 HOH HOH . C 3 HOH A 39 339 159 HOH HOH . C 3 HOH A 40 340 72 HOH HOH . C 3 HOH A 41 341 110 HOH HOH . C 3 HOH A 42 342 53 HOH HOH . C 3 HOH A 43 343 23 HOH HOH . C 3 HOH A 44 344 4 HOH HOH . C 3 HOH A 45 345 59 HOH HOH . C 3 HOH A 46 346 176 HOH HOH . C 3 HOH A 47 347 149 HOH HOH . C 3 HOH A 48 348 142 HOH HOH . C 3 HOH A 49 349 39 HOH HOH . C 3 HOH A 50 350 52 HOH HOH . C 3 HOH A 51 351 132 HOH HOH . C 3 HOH A 52 352 122 HOH HOH . C 3 HOH A 53 353 153 HOH HOH . C 3 HOH A 54 354 14 HOH HOH . C 3 HOH A 55 355 95 HOH HOH . C 3 HOH A 56 356 33 HOH HOH . C 3 HOH A 57 357 35 HOH HOH . C 3 HOH A 58 358 170 HOH HOH . C 3 HOH A 59 359 157 HOH HOH . C 3 HOH A 60 360 112 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 100 HOH HOH . C 3 HOH A 63 363 44 HOH HOH . C 3 HOH A 64 364 148 HOH HOH . C 3 HOH A 65 365 151 HOH HOH . C 3 HOH A 66 366 7 HOH HOH . C 3 HOH A 67 367 48 HOH HOH . C 3 HOH A 68 368 154 HOH HOH . C 3 HOH A 69 369 58 HOH HOH . C 3 HOH A 70 370 183 HOH HOH . C 3 HOH A 71 371 22 HOH HOH . C 3 HOH A 72 372 26 HOH HOH . C 3 HOH A 73 373 19 HOH HOH . C 3 HOH A 74 374 109 HOH HOH . C 3 HOH A 75 375 76 HOH HOH . C 3 HOH A 76 376 136 HOH HOH . C 3 HOH A 77 377 155 HOH HOH . C 3 HOH A 78 378 8 HOH HOH . C 3 HOH A 79 379 13 HOH HOH . C 3 HOH A 80 380 12 HOH HOH . C 3 HOH A 81 381 113 HOH HOH . C 3 HOH A 82 382 81 HOH HOH . C 3 HOH A 83 383 62 HOH HOH . C 3 HOH A 84 384 20 HOH HOH . C 3 HOH A 85 385 74 HOH HOH . C 3 HOH A 86 386 119 HOH HOH . C 3 HOH A 87 387 129 HOH HOH . C 3 HOH A 88 388 83 HOH HOH . C 3 HOH A 89 389 80 HOH HOH . C 3 HOH A 90 390 57 HOH HOH . C 3 HOH A 91 391 131 HOH HOH . C 3 HOH A 92 392 60 HOH HOH . C 3 HOH A 93 393 28 HOH HOH . C 3 HOH A 94 394 29 HOH HOH . C 3 HOH A 95 395 147 HOH HOH . C 3 HOH A 96 396 169 HOH HOH . C 3 HOH A 97 397 121 HOH HOH . C 3 HOH A 98 398 145 HOH HOH . C 3 HOH A 99 399 101 HOH HOH . C 3 HOH A 100 400 138 HOH HOH . C 3 HOH A 101 401 46 HOH HOH . C 3 HOH A 102 402 21 HOH HOH . C 3 HOH A 103 403 27 HOH HOH . C 3 HOH A 104 404 160 HOH HOH . C 3 HOH A 105 405 69 HOH HOH . C 3 HOH A 106 406 11 HOH HOH . C 3 HOH A 107 407 89 HOH HOH . C 3 HOH A 108 408 137 HOH HOH . C 3 HOH A 109 409 3 HOH HOH . C 3 HOH A 110 410 135 HOH HOH . C 3 HOH A 111 411 97 HOH HOH . C 3 HOH A 112 412 141 HOH HOH . C 3 HOH A 113 413 144 HOH HOH . C 3 HOH A 114 414 117 HOH HOH . C 3 HOH A 115 415 1 HOH HOH . C 3 HOH A 116 416 139 HOH HOH . C 3 HOH A 117 417 104 HOH HOH . C 3 HOH A 118 418 189 HOH HOH . C 3 HOH A 119 419 108 HOH HOH . C 3 HOH A 120 420 172 HOH HOH . C 3 HOH A 121 421 34 HOH HOH . C 3 HOH A 122 422 16 HOH HOH . C 3 HOH A 123 423 120 HOH HOH . C 3 HOH A 124 424 31 HOH HOH . C 3 HOH A 125 425 66 HOH HOH . C 3 HOH A 126 426 42 HOH HOH . C 3 HOH A 127 427 18 HOH HOH . C 3 HOH A 128 428 152 HOH HOH . C 3 HOH A 129 429 36 HOH HOH . C 3 HOH A 130 430 15 HOH HOH . C 3 HOH A 131 431 168 HOH HOH . C 3 HOH A 132 432 99 HOH HOH . C 3 HOH A 133 433 111 HOH HOH . C 3 HOH A 134 434 128 HOH HOH . C 3 HOH A 135 435 94 HOH HOH . C 3 HOH A 136 436 114 HOH HOH . C 3 HOH A 137 437 85 HOH HOH . C 3 HOH A 138 438 150 HOH HOH . C 3 HOH A 139 439 5 HOH HOH . C 3 HOH A 140 440 184 HOH HOH . C 3 HOH A 141 441 178 HOH HOH . C 3 HOH A 142 442 134 HOH HOH . C 3 HOH A 143 443 54 HOH HOH . C 3 HOH A 144 444 55 HOH HOH . C 3 HOH A 145 445 86 HOH HOH . C 3 HOH A 146 446 78 HOH HOH . C 3 HOH A 147 447 10 HOH HOH . C 3 HOH A 148 448 47 HOH HOH . C 3 HOH A 149 449 37 HOH HOH . C 3 HOH A 150 450 40 HOH HOH . C 3 HOH A 151 451 115 HOH HOH . C 3 HOH A 152 452 126 HOH HOH . C 3 HOH A 153 453 71 HOH HOH . C 3 HOH A 154 454 64 HOH HOH . C 3 HOH A 155 455 118 HOH HOH . C 3 HOH A 156 456 103 HOH HOH . C 3 HOH A 157 457 68 HOH HOH . C 3 HOH A 158 458 190 HOH HOH . C 3 HOH A 159 459 195 HOH HOH . C 3 HOH A 160 460 194 HOH HOH . C 3 HOH A 161 461 173 HOH HOH . C 3 HOH A 162 462 167 HOH HOH . C 3 HOH A 163 463 163 HOH HOH . C 3 HOH A 164 464 90 HOH HOH . C 3 HOH A 165 465 162 HOH HOH . C 3 HOH A 166 466 164 HOH HOH . C 3 HOH A 167 467 123 HOH HOH . C 3 HOH A 168 468 192 HOH HOH . C 3 HOH A 169 469 49 HOH HOH . C 3 HOH A 170 470 193 HOH HOH . C 3 HOH A 171 471 98 HOH HOH . C 3 HOH A 172 472 188 HOH HOH . C 3 HOH A 173 473 96 HOH HOH . C 3 HOH A 174 474 166 HOH HOH . C 3 HOH A 175 475 125 HOH HOH . C 3 HOH A 176 476 165 HOH HOH . C 3 HOH A 177 477 180 HOH HOH . C 3 HOH A 178 478 88 HOH HOH . C 3 HOH A 179 479 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . B 2 -1.715 -2.023 20.337 1 19.49 ? N1 APR 201 A 1 HETATM 2 C C2 APR . . . B 2 -2.049 -1.595 19.063 1 21.87 ? C2 APR 201 A 1 HETATM 3 N N3 APR . . . B 2 -2.989 -0.695 18.764 1 21.86 ? N3 APR 201 A 1 HETATM 4 C C4 APR . . . B 2 -3.5 -0.001 19.786 1 19.27 ? C4 APR 201 A 1 HETATM 5 C C5 APR . . . B 2 -3.146 -0.329 21.181 1 18.61 ? C5 APR 201 A 1 HETATM 6 C C6 APR . . . B 2 -2.161 -1.384 21.402 1 20.2 ? C6 APR 201 A 1 HETATM 7 N N6 APR . . . B 2 -1.825 -1.675 22.699 1 21.16 ? N6 APR 201 A 1 HETATM 8 N N7 APR . . . B 2 -3.859 0.51 22.039 1 19.19 ? N7 APR 201 A 1 HETATM 9 C C8 APR . . . B 2 -4.593 1.329 21.235 1 21.4 ? C8 APR 201 A 1 HETATM 10 N N9 APR . . . B 2 -4.453 0.969 19.916 1 20.81 ? N9 APR 201 A 1 HETATM 11 C C1' APR . . . B 2 -5.008 1.602 18.688 1 19.65 ? C1' APR 201 A 1 HETATM 12 C C2' APR . . . B 2 -6.193 2.55 18.949 1 22.32 ? C2' APR 201 A 1 HETATM 13 O O2' APR . . . B 2 -7.491 1.823 19.071 1 25.46 ? O2' APR 201 A 1 HETATM 14 C C3' APR . . . B 2 -6.052 3.401 17.735 1 20.25 ? C3' APR 201 A 1 HETATM 15 O O3' APR . . . B 2 -6.563 2.732 16.504 1 22.53 ? O3' APR 201 A 1 HETATM 16 O O4' APR . . . B 2 -3.963 2.482 18.2 1 19.94 ? O4' APR 201 A 1 HETATM 17 C C4' APR . . . B 2 -4.532 3.67 17.527 1 19.09 ? C4' APR 201 A 1 HETATM 18 C C5' APR . . . B 2 -3.965 4.9 18.111 1 19.12 ? C5' APR 201 A 1 HETATM 19 O O5' APR . . . B 2 -4.911 5.222 19.16 1 24.5 ? O5' APR 201 A 1 HETATM 20 P PA APR . . . B 2 -4.565 6.151 20.451 1 21.05 ? PA APR 201 A 1 HETATM 21 O O1A APR . . . B 2 -3.701 5.447 21.413 1 21.46 ? O1A APR 201 A 1 HETATM 22 O O2A APR . . . B 2 -5.929 6.656 20.989 1 25.11 ? O2A APR 201 A 1 HETATM 23 O O3A APR . . . B 2 -3.687 7.278 19.747 1 20.41 ? O3A APR 201 A 1 HETATM 24 P PB APR . . . B 2 -4.041 8.724 19.063 1 20.48 ? PB APR 201 A 1 HETATM 25 O O1B APR . . . B 2 -5.391 8.684 18.364 1 19.19 ? O1B APR 201 A 1 HETATM 26 O O2B APR . . . B 2 -2.737 9.207 18.373 1 19.05 ? O2B APR 201 A 1 HETATM 27 O O5D APR . . . B 2 -4.343 9.606 20.428 1 22.88 ? O5D APR 201 A 1 HETATM 28 C C5D APR . . . B 2 -3.235 10.006 21.272 1 21.96 ? C5D APR 201 A 1 HETATM 29 O O4D APR . . . B 2 -4.491 9.573 23.189 1 27.08 ? O4D APR 201 A 1 HETATM 30 O O1D APR . . . B 2 -3.451 8.06 24.775 1 32.87 ? O1D APR 201 A 1 HETATM 31 C C1D APR . . . B 2 -3.778 9.425 24.479 1 27.95 ? C1D APR 201 A 1 HETATM 32 O O2D APR . . . B 2 -1.994 10.531 25.605 1 30.5 ? O2D APR 201 A 1 HETATM 33 C C2D APR . . . B 2 -2.438 10.182 24.259 1 25.37 ? C2D APR 201 A 1 HETATM 34 O O3D APR . . . B 2 -3.558 12.324 24.174 1 24.85 ? O3D APR 201 A 1 HETATM 35 C C3D APR . . . B 2 -2.866 11.298 23.379 1 25.01 ? C3D APR 201 A 1 HETATM 36 C C4D APR . . . B 2 -3.885 10.653 22.51 1 22.37 ? C4D APR 201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #