data_5HPB
#
_model_server_result.job_id            1bYgbBARWKXVgolp5SKeLw 
_model_server_result.datetime_utc      '2024-10-18 09:20:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5HPB 
#
_exptl.entry_id    5HPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HPB 
_cell.length_a            85.845 
_cell.length_b            85.845 
_cell.length_c            76.725 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O2B NDP . A NDP 201 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? 
covale ? covale2 B P2B NDP . A NDP 201 1_555 D O4 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.546 ? 
covale ? covale3 B PA NDP . A NDP 201 1_555 E O2 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale4 B O1A NDP . A NDP 201 1_555 E S SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale5 B PN NDP . A NDP 201 1_555 E O3 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 273 n n 
PA O2A NDP sing 274 n n 
PA O5B NDP sing 275 n n 
PA O3 NDP sing 276 n n 
O2A HOA2 NDP sing 277 n n 
O5B C5B NDP sing 278 n n 
C5B C4B NDP sing 279 n n 
C5B H51A NDP sing 280 n n 
C5B H52A NDP sing 281 n n 
C4B O4B NDP sing 282 n n 
C4B C3B NDP sing 283 n n 
C4B H4B NDP sing 284 n n 
O4B C1B NDP sing 285 n n 
C3B O3B NDP sing 286 n n 
C3B C2B NDP sing 287 n n 
C3B H3B NDP sing 288 n n 
O3B HO3A NDP sing 289 n n 
C2B O2B NDP sing 290 n n 
C2B C1B NDP sing 291 n n 
C2B H2B NDP sing 292 n n 
O2B P2B NDP sing 293 n n 
C1B N9A NDP sing 294 n n 
C1B H1B NDP sing 295 n n 
N9A C8A NDP sing 296 n y 
N9A C4A NDP sing 297 n y 
C8A N7A NDP doub 298 n y 
C8A H8A NDP sing 299 n n 
N7A C5A NDP sing 300 n y 
C5A C6A NDP sing 301 n y 
C5A C4A NDP doub 302 n y 
C6A N6A NDP sing 303 n n 
C6A N1A NDP doub 304 n y 
N6A H61A NDP sing 305 n n 
N6A H62A NDP sing 306 n n 
N1A C2A NDP sing 307 n y 
C2A N3A NDP doub 308 n y 
C2A H2A NDP sing 309 n n 
N3A C4A NDP sing 310 n y 
O3 PN NDP sing 311 n n 
PN O1N NDP doub 312 n n 
PN O2N NDP sing 313 n n 
PN O5D NDP sing 314 n n 
O2N H21N NDP sing 315 n n 
O5D C5D NDP sing 316 n n 
C5D C4D NDP sing 317 n n 
C5D H51N NDP sing 318 n n 
C5D H52N NDP sing 319 n n 
C4D O4D NDP sing 320 n n 
C4D C3D NDP sing 321 n n 
C4D H4D NDP sing 322 n n 
O4D C1D NDP sing 323 n n 
C3D O3D NDP sing 324 n n 
C3D C2D NDP sing 325 n n 
C3D H3D NDP sing 326 n n 
O3D HO3N NDP sing 327 n n 
C2D O2D NDP sing 328 n n 
C2D C1D NDP sing 329 n n 
C2D H2D NDP sing 330 n n 
O2D HO2N NDP sing 331 n n 
C1D N1N NDP sing 332 n n 
C1D H1D NDP sing 333 n n 
N1N C2N NDP sing 334 n n 
N1N C6N NDP sing 335 n n 
C2N C3N NDP doub 336 n n 
C2N H2N NDP sing 337 n n 
C3N C7N NDP sing 338 n n 
C3N C4N NDP sing 339 n n 
C7N O7N NDP doub 340 n n 
C7N N7N NDP sing 341 n n 
N7N H71N NDP sing 342 n n 
N7N H72N NDP sing 343 n n 
C4N C5N NDP sing 344 n n 
C4N H41N NDP sing 345 n n 
C4N H42N NDP sing 346 n n 
C5N C6N NDP doub 347 n n 
C5N H5N NDP sing 348 n n 
C6N H6N NDP sing 349 n n 
P2B O1X NDP doub 350 n n 
P2B O2X NDP sing 351 n n 
P2B O3X NDP sing 352 n n 
O2X HOP2 NDP sing 353 n n 
O3X HOP3 NDP sing 354 n n 
#
_atom_sites.entry_id                     5HPB 
_atom_sites.fract_transf_matrix[1][1]    0.011649 
_atom_sites.fract_transf_matrix[1][2]    0.006725 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 201 1 NDP NDP . 
C 3 63W A 1 202 1 63W DRG . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 26 HOH HOH . 
F 5 HOH A 2 302 45 HOH HOH . 
F 5 HOH A 3 303 33 HOH HOH . 
F 5 HOH A 4 304 28 HOH HOH . 
F 5 HOH A 5 305 22 HOH HOH . 
F 5 HOH A 6 306 42 HOH HOH . 
F 5 HOH A 7 307 38 HOH HOH . 
F 5 HOH A 8 308 27 HOH HOH . 
F 5 HOH A 9 309 16 HOH HOH . 
F 5 HOH A 10 310 25 HOH HOH . 
F 5 HOH A 11 311 39 HOH HOH . 
F 5 HOH A 12 312 53 HOH HOH . 
F 5 HOH A 13 313 3 HOH HOH . 
F 5 HOH A 14 314 6 HOH HOH . 
F 5 HOH A 15 315 2 HOH HOH . 
F 5 HOH A 16 316 55 HOH HOH . 
F 5 HOH A 17 317 52 HOH HOH . 
F 5 HOH A 18 318 1 HOH HOH . 
F 5 HOH A 19 319 12 HOH HOH . 
F 5 HOH A 20 320 29 HOH HOH . 
F 5 HOH A 21 321 49 HOH HOH . 
F 5 HOH A 22 322 19 HOH HOH . 
F 5 HOH A 23 323 40 HOH HOH . 
F 5 HOH A 24 324 7 HOH HOH . 
F 5 HOH A 25 325 43 HOH HOH . 
F 5 HOH A 26 326 54 HOH HOH . 
F 5 HOH A 27 327 51 HOH HOH . 
F 5 HOH A 28 328 8 HOH HOH . 
F 5 HOH A 29 329 14 HOH HOH . 
F 5 HOH A 30 330 37 HOH HOH . 
F 5 HOH A 31 331 17 HOH HOH . 
F 5 HOH A 32 332 4 HOH HOH . 
F 5 HOH A 33 333 46 HOH HOH . 
F 5 HOH A 34 334 30 HOH HOH . 
F 5 HOH A 35 335 11 HOH HOH . 
F 5 HOH A 36 336 44 HOH HOH . 
F 5 HOH A 37 337 24 HOH HOH . 
F 5 HOH A 38 338 23 HOH HOH . 
F 5 HOH A 39 339 13 HOH HOH . 
F 5 HOH A 40 340 18 HOH HOH . 
F 5 HOH A 41 341 35 HOH HOH . 
F 5 HOH A 42 342 34 HOH HOH . 
F 5 HOH A 43 343 36 HOH HOH . 
F 5 HOH A 44 344 41 HOH HOH . 
F 5 HOH A 45 345 21 HOH HOH . 
F 5 HOH A 46 346 20 HOH HOH . 
F 5 HOH A 47 347 10 HOH HOH . 
F 5 HOH A 48 348 56 HOH HOH . 
F 5 HOH A 49 349 32 HOH HOH . 
F 5 HOH A 50 350 47 HOH HOH . 
F 5 HOH A 51 351 50 HOH HOH . 
F 5 HOH A 52 352 48 HOH HOH . 
F 5 HOH A 53 353 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 26.347 8.375 9.82 0.5 19.38 ? PA NDP 201 A 1 
HETATM 2 O O1A NDP . . . B 2 25.017 7.685 9.665 0.5 19.42 ? O1A NDP 201 A 1 
HETATM 3 O O2A NDP . . . B 2 26.617 9.544 9.086 0.5 13.75 ? O2A NDP 201 A 1 
HETATM 4 O O5B NDP . . . B 2 26.596 8.434 11.357 0.5 17.89 ? O5B NDP 201 A 1 
HETATM 5 C C5B NDP . . . B 2 26.257 7.43 12.303 0.5 17.77 ? C5B NDP 201 A 1 
HETATM 6 C C4B NDP . . . B 2 25.761 8.11 13.589 0.5 20.07 ? C4B NDP 201 A 1 
HETATM 7 O O4B NDP . . . B 2 24.719 8.854 13.15 0.5 22.94 ? O4B NDP 201 A 1 
HETATM 8 C C3B NDP . . . B 2 25.157 7.13 14.485 0.5 21.31 ? C3B NDP 201 A 1 
HETATM 9 O O3B NDP . . . B 2 26.227 6.542 15.254 0.5 22.54 ? O3B NDP 201 A 1 
HETATM 10 C C2B NDP . . . B 2 24.295 8.014 15.331 0.5 20.57 ? C2B NDP 201 A 1 
HETATM 11 O O2B NDP . . . B 2 25.078 8.866 16.201 0.5 22.99 ? O2B NDP 201 A 1 
HETATM 12 C C1B NDP . . . B 2 23.784 8.963 14.232 0.5 20.4 ? C1B NDP 201 A 1 
HETATM 13 N N9A NDP . . . B 2 22.579 8.51 13.485 0.5 21.1 ? N9A NDP 201 A 1 
HETATM 14 C C8A NDP . . . B 2 22.501 7.894 12.31 0.5 22.18 ? C8A NDP 201 A 1 
HETATM 15 N N7A NDP . . . B 2 21.206 7.73 11.978 0.5 21.9 ? N7A NDP 201 A 1 
HETATM 16 C C5A NDP . . . B 2 20.48 8.28 12.947 0.5 22.04 ? C5A NDP 201 A 1 
HETATM 17 C C6A NDP . . . B 2 19.17 8.445 13.132 0.5 25.26 ? C6A NDP 201 A 1 
HETATM 18 N N6A NDP . . . B 2 18.332 7.929 12.215 0.5 27.01 ? N6A NDP 201 A 1 
HETATM 19 N N1A NDP . . . B 2 18.719 9.067 14.21 0.5 23.21 ? N1A NDP 201 A 1 
HETATM 20 C C2A NDP . . . B 2 19.564 9.607 15.17 0.5 23.74 ? C2A NDP 201 A 1 
HETATM 21 N N3A NDP . . . B 2 20.941 9.422 14.991 0.5 24.76 ? N3A NDP 201 A 1 
HETATM 22 C C4A NDP . . . B 2 21.341 8.788 13.883 0.5 23.14 ? C4A NDP 201 A 1 
HETATM 23 O O3 NDP . . . B 2 27.595 7.293 9.408 0.5 18.18 ? O3 NDP 201 A 1 
HETATM 24 P PN NDP . . . B 2 28.055 6.096 8.514 0.5 20 ? PN NDP 201 A 1 
HETATM 25 O O1N NDP . . . B 2 26.985 5.323 7.872 0.5 19.96 ? O1N NDP 201 A 1 
HETATM 26 O O2N NDP . . . B 2 28.93 5.402 9.407 0.5 24.81 ? O2N NDP 201 A 1 
HETATM 27 O O5D NDP . . . B 2 28.746 6.799 7.318 0.5 20.47 ? O5D NDP 201 A 1 
HETATM 28 C C5D NDP . . . B 2 29.815 7.725 7.207 0.5 19.35 ? C5D NDP 201 A 1 
HETATM 29 C C4D NDP . . . B 2 30.77 7.218 6.059 0.5 17.44 ? C4D NDP 201 A 1 
HETATM 30 O O4D NDP . . . B 2 30.249 7.297 4.729 0.5 16.07 ? O4D NDP 201 A 1 
HETATM 31 C C3D NDP . . . B 2 31.991 7.997 6.111 0.5 17.17 ? C3D NDP 201 A 1 
HETATM 32 O O3D NDP . . . B 2 33.068 7.168 5.617 0.5 17.1 ? O3D NDP 201 A 1 
HETATM 33 C C2D NDP . . . B 2 31.631 9.153 5.16 0.5 17.03 ? C2D NDP 201 A 1 
HETATM 34 O O2D NDP . . . B 2 32.708 9.581 4.536 0.5 19.32 ? O2D NDP 201 A 1 
HETATM 35 C C1D NDP . . . B 2 30.879 8.351 4.039 0.5 16.49 ? C1D NDP 201 A 1 
HETATM 36 N N1N NDP . . . B 2 29.691 8.954 3.371 0.5 17.14 ? N1N NDP 201 A 1 
HETATM 37 C C2N NDP . . . B 2 29.628 8.854 2.003 0.5 16.82 ? C2N NDP 201 A 1 
HETATM 38 C C3N NDP . . . B 2 28.571 9.286 1.193 0.5 16.25 ? C3N NDP 201 A 1 
HETATM 39 C C7N NDP . . . B 2 28.574 9.103 -0.203 0.5 15.5 ? C7N NDP 201 A 1 
HETATM 40 O O7N NDP . . . B 2 27.701 9.572 -0.941 0.5 14.3 ? O7N NDP 201 A 1 
HETATM 41 N N7N NDP . . . B 2 29.607 8.449 -0.821 0.5 14.19 ? N7N NDP 201 A 1 
HETATM 42 C C4N NDP . . . B 2 27.513 9.925 1.915 0.5 15.44 ? C4N NDP 201 A 1 
HETATM 43 C C5N NDP . . . B 2 27.594 10.068 3.305 0.5 16.01 ? C5N NDP 201 A 1 
HETATM 44 C C6N NDP . . . B 2 28.638 9.623 4.095 0.5 14.8 ? C6N NDP 201 A 1 
HETATM 45 P P2B NDP . . . B 2 24.841 8.773 17.72 0.5 22.84 ? P2B NDP 201 A 1 
HETATM 46 O O1X NDP . . . B 2 23.351 8.791 18.01 0.5 25.48 ? O1X NDP 201 A 1 
HETATM 47 O O2X NDP . . . B 2 25.55 7.359 17.958 0.5 21.85 ? O2X NDP 201 A 1 
HETATM 48 O O3X NDP . . . B 2 25.676 9.921 18.46 0.5 19.33 ? O3X NDP 201 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#