data_5HPB
#
_model_server_result.job_id            30CM2IhWY_sgTI033C6m1w 
_model_server_result.datetime_utc      '2024-11-21 17:16:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5HPB 
#
_exptl.entry_id    5HPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.389 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methyl-6-{[4-(trifluoromethyl)phenyl]sulfanyl}thieno[2,3-d]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HPB 
_cell.length_a            85.845 
_cell.length_b            85.845 
_cell.length_c            76.725 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O2B NDP . A NDP 201 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? 
covale ? covale2 B P2B NDP . A NDP 201 1_555 D O4 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.546 ? 
covale ? covale3 B PA NDP . A NDP 201 1_555 E O2 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? 
covale ? covale4 B O1A NDP . A NDP 201 1_555 E S SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale5 B PN NDP . A NDP 201 1_555 E O3 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? 
#
_chem_comp.formula           'C14 H11 F3 N4 S2' 
_chem_comp.formula_weight    356.389 
_chem_comp.id                63W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methyl-6-{[4-(trifluoromethyl)phenyl]sulfanyl}thieno[2,3-d]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAB C2 63W sing 1 n n 
C2 N3 63W doub 2 n y 
C2 N1 63W sing 3 n y 
N3 C4 63W sing 4 n y 
N1 C6 63W doub 5 n y 
C4 SAN 63W sing 6 n y 
C4 C5 63W doub 7 n y 
SAN CAT 63W sing 8 n y 
C6 C5 63W sing 9 n y 
C6 NAC 63W sing 10 n n 
C5 CAR 63W sing 11 n y 
FAE CAW 63W sing 12 n n 
CAT CAR 63W doub 13 n y 
CAT SAM 63W sing 14 n n 
CAR CAA 63W sing 15 n n 
FAD CAW 63W sing 16 n n 
CAI CAG 63W doub 17 n y 
CAI CAS 63W sing 18 n y 
CAW CAS 63W sing 19 n n 
CAW FAF 63W sing 20 n n 
CAG CAP 63W sing 21 n y 
CAS CAJ 63W doub 22 n y 
CAP SAM 63W sing 23 n n 
CAP CAH 63W doub 24 n y 
CAJ CAH 63W sing 25 n y 
CAA H1 63W sing 26 n n 
CAA H2 63W sing 27 n n 
CAA H3 63W sing 28 n n 
NAC H4 63W sing 29 n n 
NAC H5 63W sing 30 n n 
NAB H6 63W sing 31 n n 
NAB H7 63W sing 32 n n 
CAG H8 63W sing 33 n n 
CAI H9 63W sing 34 n n 
CAJ H10 63W sing 35 n n 
CAH H11 63W sing 36 n n 
#
_atom_sites.entry_id                     5HPB 
_atom_sites.fract_transf_matrix[1][1]    0.011649 
_atom_sites.fract_transf_matrix[1][2]    0.006725 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013034 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 201 1 NDP NDP . 
C 3 63W A 1 202 1 63W DRG . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 26 HOH HOH . 
F 5 HOH A 2 302 45 HOH HOH . 
F 5 HOH A 3 303 33 HOH HOH . 
F 5 HOH A 4 304 28 HOH HOH . 
F 5 HOH A 5 305 22 HOH HOH . 
F 5 HOH A 6 306 42 HOH HOH . 
F 5 HOH A 7 307 38 HOH HOH . 
F 5 HOH A 8 308 27 HOH HOH . 
F 5 HOH A 9 309 16 HOH HOH . 
F 5 HOH A 10 310 25 HOH HOH . 
F 5 HOH A 11 311 39 HOH HOH . 
F 5 HOH A 12 312 53 HOH HOH . 
F 5 HOH A 13 313 3 HOH HOH . 
F 5 HOH A 14 314 6 HOH HOH . 
F 5 HOH A 15 315 2 HOH HOH . 
F 5 HOH A 16 316 55 HOH HOH . 
F 5 HOH A 17 317 52 HOH HOH . 
F 5 HOH A 18 318 1 HOH HOH . 
F 5 HOH A 19 319 12 HOH HOH . 
F 5 HOH A 20 320 29 HOH HOH . 
F 5 HOH A 21 321 49 HOH HOH . 
F 5 HOH A 22 322 19 HOH HOH . 
F 5 HOH A 23 323 40 HOH HOH . 
F 5 HOH A 24 324 7 HOH HOH . 
F 5 HOH A 25 325 43 HOH HOH . 
F 5 HOH A 26 326 54 HOH HOH . 
F 5 HOH A 27 327 51 HOH HOH . 
F 5 HOH A 28 328 8 HOH HOH . 
F 5 HOH A 29 329 14 HOH HOH . 
F 5 HOH A 30 330 37 HOH HOH . 
F 5 HOH A 31 331 17 HOH HOH . 
F 5 HOH A 32 332 4 HOH HOH . 
F 5 HOH A 33 333 46 HOH HOH . 
F 5 HOH A 34 334 30 HOH HOH . 
F 5 HOH A 35 335 11 HOH HOH . 
F 5 HOH A 36 336 44 HOH HOH . 
F 5 HOH A 37 337 24 HOH HOH . 
F 5 HOH A 38 338 23 HOH HOH . 
F 5 HOH A 39 339 13 HOH HOH . 
F 5 HOH A 40 340 18 HOH HOH . 
F 5 HOH A 41 341 35 HOH HOH . 
F 5 HOH A 42 342 34 HOH HOH . 
F 5 HOH A 43 343 36 HOH HOH . 
F 5 HOH A 44 344 41 HOH HOH . 
F 5 HOH A 45 345 21 HOH HOH . 
F 5 HOH A 46 346 20 HOH HOH . 
F 5 HOH A 47 347 10 HOH HOH . 
F 5 HOH A 48 348 56 HOH HOH . 
F 5 HOH A 49 349 32 HOH HOH . 
F 5 HOH A 50 350 47 HOH HOH . 
F 5 HOH A 51 351 50 HOH HOH . 
F 5 HOH A 52 352 48 HOH HOH . 
F 5 HOH A 53 353 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 63W . . . C 3 28.78 12.992 -2.04 1 29.43 ? C4 63W 202 A 1 
HETATM 2 C C5 63W . . . C 3 27.966 12.862 -0.958 1 27.77 ? C5 63W 202 A 1 
HETATM 3 C C6 63W . . . C 3 26.638 12.526 -1.212 1 22.83 ? C6 63W 202 A 1 
HETATM 4 N N1 63W . . . C 3 26.223 12.332 -2.433 1 24.62 ? N1 63W 202 A 1 
HETATM 5 N N3 63W . . . C 3 28.328 12.799 -3.305 1 32.63 ? N3 63W 202 A 1 
HETATM 6 C CAA 63W . . . C 3 28.011 13.104 1.557 1 37.89 ? CAA 63W 202 A 1 
HETATM 7 C CAR 63W . . . C 3 28.623 13.105 0.192 1 31.65 ? CAR 63W 202 A 1 
HETATM 8 N NAC 63W . . . C 3 25.759 12.417 -0.193 1 27.34 ? NAC 63W 202 A 1 
HETATM 9 C C2 63W . . . C 3 27.03 12.482 -3.488 1 26.28 ? C2 63W 202 A 1 
HETATM 10 N NAB 63W . . . C 3 26.597 12.252 -4.714 1 26.03 ? NAB 63W 202 A 1 
HETATM 11 S SAN 63W . . . C 3 30.42 13.423 -1.551 1 38.79 ? SAN 63W 202 A 1 
HETATM 12 C CAT 63W . . . C 3 29.943 13.426 0.095 1 36.1 ? CAT 63W 202 A 1 
HETATM 13 S SAM 63W . . . C 3 31.039 13.801 1.723 1 49.17 ? SAM 63W 202 A 1 
HETATM 14 C CAP 63W . . . C 3 31.45 15.431 1.55 1 44.16 ? CAP 63W 202 A 1 
HETATM 15 C CAG 63W . . . C 3 30.458 16.333 1.151 1 38.27 ? CAG 63W 202 A 1 
HETATM 16 C CAI 63W . . . C 3 30.767 17.67 0.959 1 44.96 ? CAI 63W 202 A 1 
HETATM 17 C CAS 63W . . . C 3 32.076 18.151 1.182 1 46.57 ? CAS 63W 202 A 1 
HETATM 18 C CAW 63W . . . C 3 32.416 19.54 0.972 1 51.2 ? CAW 63W 202 A 1 
HETATM 19 F FAE 63W . . . C 3 31.572 20.217 -0.117 1 53.38 ? FAE 63W 202 A 1 
HETATM 20 F FAF 63W . . . C 3 32.274 20.186 1.951 1 64.6 ? FAF 63W 202 A 1 
HETATM 21 F FAD 63W . . . C 3 33.678 19.612 0.615 1 61.57 ? FAD 63W 202 A 1 
HETATM 22 C CAJ 63W . . . C 3 33.037 17.223 1.603 1 41.18 ? CAJ 63W 202 A 1 
HETATM 23 C CAH 63W . . . C 3 32.767 15.857 1.818 1 37.59 ? CAH 63W 202 A 1 
#
_model_server_stats.io_time_ms              89 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#