data_5HPH # _model_server_result.job_id iXKutMhbrsQUmcuIa9LnJA _model_server_result.datetime_utc '2024-12-01 19:14:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 5HPH # _exptl.entry_id 5HPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HPH _cell.length_a 93.437 _cell.length_b 104.946 _cell.length_c 156.909 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 65 A ASN 119 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc2 C O2G ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 C O2B ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc4 C O2A ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc5 E MG MG . A MG 803 1_555 P O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 B OD1 ASN 65 B ASN 119 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc7 H O1G ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 H O1B ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc9 H O1A ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 L MG MG . B MG 805 1_555 Q O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5HPH _atom_sites.fract_transf_matrix[1][1] 0.010702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 801 801 ANP ANP . D 3 PO4 A 1 802 802 PO4 PO4 . E 4 MG A 1 803 803 MG MG . F 5 GOL A 1 804 804 GOL GOL . G 6 SO4 A 1 805 805 SO4 SO4 . H 2 ANP B 1 801 801 ANP ANP . I 3 PO4 B 1 802 802 PO4 PO4 . J 3 PO4 B 1 803 803 PO4 PO4 . K 6 SO4 B 1 804 804 SO4 SO4 . L 4 MG B 1 805 803 MG MG . M 5 GOL B 1 806 804 GOL GOL . N 5 GOL B 1 807 805 GOL GOL . O 5 GOL B 1 808 806 GOL GOL . P 7 HOH A 1 901 71 HOH HOH . P 7 HOH A 2 902 134 HOH HOH . P 7 HOH A 3 903 120 HOH HOH . P 7 HOH A 4 904 5 HOH HOH . P 7 HOH A 5 905 70 HOH HOH . P 7 HOH A 6 906 46 HOH HOH . P 7 HOH A 7 907 4 HOH HOH . P 7 HOH A 8 908 21 HOH HOH . P 7 HOH A 9 909 121 HOH HOH . P 7 HOH A 10 910 42 HOH HOH . P 7 HOH A 11 911 7 HOH HOH . P 7 HOH A 12 912 77 HOH HOH . P 7 HOH A 13 913 26 HOH HOH . P 7 HOH A 14 914 68 HOH HOH . P 7 HOH A 15 915 23 HOH HOH . P 7 HOH A 16 916 2 HOH HOH . P 7 HOH A 17 917 101 HOH HOH . P 7 HOH A 18 918 50 HOH HOH . P 7 HOH A 19 919 73 HOH HOH . P 7 HOH A 20 920 16 HOH HOH . P 7 HOH A 21 921 30 HOH HOH . P 7 HOH A 22 922 127 HOH HOH . P 7 HOH A 23 923 64 HOH HOH . P 7 HOH A 24 924 83 HOH HOH . P 7 HOH A 25 925 45 HOH HOH . P 7 HOH A 26 926 9 HOH HOH . P 7 HOH A 27 927 51 HOH HOH . P 7 HOH A 28 928 90 HOH HOH . P 7 HOH A 29 929 37 HOH HOH . P 7 HOH A 30 930 53 HOH HOH . P 7 HOH A 31 931 47 HOH HOH . P 7 HOH A 32 932 18 HOH HOH . P 7 HOH A 33 933 128 HOH HOH . P 7 HOH A 34 934 49 HOH HOH . P 7 HOH A 35 935 113 HOH HOH . P 7 HOH A 36 936 66 HOH HOH . P 7 HOH A 37 937 39 HOH HOH . P 7 HOH A 38 938 15 HOH HOH . P 7 HOH A 39 939 55 HOH HOH . P 7 HOH A 40 940 109 HOH HOH . P 7 HOH A 41 941 56 HOH HOH . P 7 HOH A 42 942 43 HOH HOH . P 7 HOH A 43 943 63 HOH HOH . P 7 HOH A 44 944 62 HOH HOH . P 7 HOH A 45 945 106 HOH HOH . P 7 HOH A 46 946 108 HOH HOH . P 7 HOH A 47 947 118 HOH HOH . P 7 HOH A 48 948 88 HOH HOH . P 7 HOH A 49 949 75 HOH HOH . P 7 HOH A 50 950 97 HOH HOH . P 7 HOH A 51 951 60 HOH HOH . P 7 HOH A 52 952 107 HOH HOH . P 7 HOH A 53 953 114 HOH HOH . P 7 HOH A 54 954 111 HOH HOH . P 7 HOH A 55 955 24 HOH HOH . P 7 HOH A 56 956 133 HOH HOH . P 7 HOH A 57 957 84 HOH HOH . P 7 HOH A 58 958 129 HOH HOH . P 7 HOH A 59 959 99 HOH HOH . P 7 HOH A 60 960 69 HOH HOH . P 7 HOH A 61 961 103 HOH HOH . P 7 HOH A 62 962 135 HOH HOH . Q 7 HOH B 1 901 81 HOH HOH . Q 7 HOH B 2 902 58 HOH HOH . Q 7 HOH B 3 903 98 HOH HOH . Q 7 HOH B 4 904 10 HOH HOH . Q 7 HOH B 5 905 6 HOH HOH . Q 7 HOH B 6 906 44 HOH HOH . Q 7 HOH B 7 907 87 HOH HOH . Q 7 HOH B 8 908 82 HOH HOH . Q 7 HOH B 9 909 19 HOH HOH . Q 7 HOH B 10 910 17 HOH HOH . Q 7 HOH B 11 911 85 HOH HOH . Q 7 HOH B 12 912 61 HOH HOH . Q 7 HOH B 13 913 33 HOH HOH . Q 7 HOH B 14 914 100 HOH HOH . Q 7 HOH B 15 915 13 HOH HOH . Q 7 HOH B 16 916 41 HOH HOH . Q 7 HOH B 17 917 3 HOH HOH . Q 7 HOH B 18 918 92 HOH HOH . Q 7 HOH B 19 919 89 HOH HOH . Q 7 HOH B 20 920 96 HOH HOH . Q 7 HOH B 21 921 29 HOH HOH . Q 7 HOH B 22 922 78 HOH HOH . Q 7 HOH B 23 923 12 HOH HOH . Q 7 HOH B 24 924 79 HOH HOH . Q 7 HOH B 25 925 11 HOH HOH . Q 7 HOH B 26 926 8 HOH HOH . Q 7 HOH B 27 927 25 HOH HOH . Q 7 HOH B 28 928 110 HOH HOH . Q 7 HOH B 29 929 14 HOH HOH . Q 7 HOH B 30 930 54 HOH HOH . Q 7 HOH B 31 931 72 HOH HOH . Q 7 HOH B 32 932 36 HOH HOH . Q 7 HOH B 33 933 28 HOH HOH . Q 7 HOH B 34 934 22 HOH HOH . Q 7 HOH B 35 935 125 HOH HOH . Q 7 HOH B 36 936 95 HOH HOH . Q 7 HOH B 37 937 80 HOH HOH . Q 7 HOH B 38 938 40 HOH HOH . Q 7 HOH B 39 939 48 HOH HOH . Q 7 HOH B 40 940 93 HOH HOH . Q 7 HOH B 41 941 115 HOH HOH . Q 7 HOH B 42 942 76 HOH HOH . Q 7 HOH B 43 943 38 HOH HOH . Q 7 HOH B 44 944 52 HOH HOH . Q 7 HOH B 45 945 130 HOH HOH . Q 7 HOH B 46 946 65 HOH HOH . Q 7 HOH B 47 947 32 HOH HOH . Q 7 HOH B 48 948 132 HOH HOH . Q 7 HOH B 49 949 20 HOH HOH . Q 7 HOH B 50 950 126 HOH HOH . Q 7 HOH B 51 951 1 HOH HOH . Q 7 HOH B 52 952 104 HOH HOH . Q 7 HOH B 53 953 27 HOH HOH . Q 7 HOH B 54 954 34 HOH HOH . Q 7 HOH B 55 955 116 HOH HOH . Q 7 HOH B 56 956 105 HOH HOH . Q 7 HOH B 57 957 112 HOH HOH . Q 7 HOH B 58 958 59 HOH HOH . Q 7 HOH B 59 959 122 HOH HOH . Q 7 HOH B 60 960 102 HOH HOH . Q 7 HOH B 61 961 31 HOH HOH . Q 7 HOH B 62 962 35 HOH HOH . Q 7 HOH B 63 963 74 HOH HOH . Q 7 HOH B 64 964 94 HOH HOH . Q 7 HOH B 65 965 124 HOH HOH . Q 7 HOH B 66 966 67 HOH HOH . Q 7 HOH B 67 967 131 HOH HOH . Q 7 HOH B 68 968 119 HOH HOH . Q 7 HOH B 69 969 117 HOH HOH . Q 7 HOH B 70 970 91 HOH HOH . Q 7 HOH B 71 971 123 HOH HOH . Q 7 HOH B 72 972 57 HOH HOH . Q 7 HOH B 73 973 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 2 -11.238 5.892 -28.051 1 52.48 ? PG ANP 801 B 1 HETATM 2 O O1G ANP . . . H 2 -11.902 6.822 -29.018 1 51.3 ? O1G ANP 801 B 1 HETATM 3 O O2G ANP . . . H 2 -11.815 5.983 -26.646 1 69.79 ? O2G ANP 801 B 1 HETATM 4 O O3G ANP . . . H 2 -9.719 5.9 -28.098 1 54.96 ? O3G ANP 801 B 1 HETATM 5 P PB ANP . . . H 2 -13.047 3.99 -29.462 1 56.09 ? PB ANP 801 B 1 HETATM 6 O O1B ANP . . . H 2 -13.236 5.061 -30.54 1 51.89 ? O1B ANP 801 B 1 HETATM 7 O O2B ANP . . . H 2 -13.049 2.529 -29.861 1 56.75 ? O2B ANP 801 B 1 HETATM 8 N N3B ANP . . . H 2 -11.591 4.26 -28.56 1 60.7 ? N3B ANP 801 B 1 HETATM 9 P PA ANP . . . H 2 -15.516 5.068 -28.465 1 56.77 ? PA ANP 801 B 1 HETATM 10 O O1A ANP . . . H 2 -15.153 6.38 -29.114 1 51.88 ? O1A ANP 801 B 1 HETATM 11 O O2A ANP . . . H 2 -16.161 5.038 -27.092 1 60.63 ? O2A ANP 801 B 1 HETATM 12 O O3A ANP . . . H 2 -14.217 4.119 -28.36 1 61.2 ? O3A ANP 801 B 1 HETATM 13 O O5' ANP . . . H 2 -16.403 4.177 -29.493 1 58.65 ? O5' ANP 801 B 1 HETATM 14 C C5' ANP . . . H 2 -16.881 2.892 -29.078 1 54.07 ? C5' ANP 801 B 1 HETATM 15 C C4' ANP . . . H 2 -17.002 1.977 -30.289 1 59.05 ? C4' ANP 801 B 1 HETATM 16 O O4' ANP . . . H 2 -18.288 2.172 -30.894 1 60.48 ? O4' ANP 801 B 1 HETATM 17 C C3' ANP . . . H 2 -15.962 2.242 -31.385 1 52.98 ? C3' ANP 801 B 1 HETATM 18 O O3' ANP . . . H 2 -14.785 1.423 -31.236 1 52.91 ? O3' ANP 801 B 1 HETATM 19 C C2' ANP . . . H 2 -16.71 1.844 -32.634 1 59.3 ? C2' ANP 801 B 1 HETATM 20 O O2' ANP . . . H 2 -16.619 0.425 -32.788 1 56.78 ? O2' ANP 801 B 1 HETATM 21 C C1' ANP . . . H 2 -18.161 2.147 -32.307 1 58.71 ? C1' ANP 801 B 1 HETATM 22 N N9 ANP . . . H 2 -18.507 3.467 -32.861 1 58.94 ? N9 ANP 801 B 1 HETATM 23 C C8 ANP . . . H 2 -18.368 4.672 -32.265 1 59.52 ? C8 ANP 801 B 1 HETATM 24 N N7 ANP . . . H 2 -18.743 5.672 -33.109 1 59.09 ? N7 ANP 801 B 1 HETATM 25 C C5 ANP . . . H 2 -19.092 5.101 -34.268 1 50 ? C5 ANP 801 B 1 HETATM 26 C C6 ANP . . . H 2 -19.579 5.551 -35.564 1 54.8 ? C6 ANP 801 B 1 HETATM 27 N N6 ANP . . . H 2 -19.76 6.862 -35.786 1 53.73 ? N6 ANP 801 B 1 HETATM 28 N N1 ANP . . . H 2 -19.834 4.612 -36.513 1 56.46 ? N1 ANP 801 B 1 HETATM 29 C C2 ANP . . . H 2 -19.654 3.308 -36.305 1 50.55 ? C2 ANP 801 B 1 HETATM 30 N N3 ANP . . . H 2 -19.197 2.824 -35.144 1 59.34 ? N3 ANP 801 B 1 HETATM 31 C C4 ANP . . . H 2 -18.92 3.654 -34.11 1 57.63 ? C4 ANP 801 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #