data_5HPH
#
_model_server_result.job_id            LKiSvMdvugACZxotg3L2ag 
_model_server_result.datetime_utc      '2024-11-05 04:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hph 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":807}' 
#
_entry.id    5HPH 
#
_exptl.entry_id    5HPH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HPH 
_cell.length_a            93.437 
_cell.length_b            104.946 
_cell.length_c            156.909 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HPH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 65 A ASN 119 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc2 C O2G ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc3 C O2B ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc4 C O2A ANP . A ANP 801 1_555 E MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc5 E MG MG . A MG 803 1_555 P O HOH . A HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc6 B OD1 ASN 65 B ASN 119 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc7 H O1G ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc8 H O1B ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc9 H O1A ANP . B ANP 801 1_555 L MG MG . B MG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc10 L MG MG . B MG 805 1_555 Q O HOH . B HOH 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     5HPH 
_atom_sites.fract_transf_matrix[1][1]    0.010702 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 801 801 ANP ANP . 
D 3 PO4 A 1 802 802 PO4 PO4 . 
E 4 MG A 1 803 803 MG MG . 
F 5 GOL A 1 804 804 GOL GOL . 
G 6 SO4 A 1 805 805 SO4 SO4 . 
H 2 ANP B 1 801 801 ANP ANP . 
I 3 PO4 B 1 802 802 PO4 PO4 . 
J 3 PO4 B 1 803 803 PO4 PO4 . 
K 6 SO4 B 1 804 804 SO4 SO4 . 
L 4 MG B 1 805 803 MG MG . 
M 5 GOL B 1 806 804 GOL GOL . 
N 5 GOL B 1 807 805 GOL GOL . 
O 5 GOL B 1 808 806 GOL GOL . 
P 7 HOH A 1 901 71 HOH HOH . 
P 7 HOH A 2 902 134 HOH HOH . 
P 7 HOH A 3 903 120 HOH HOH . 
P 7 HOH A 4 904 5 HOH HOH . 
P 7 HOH A 5 905 70 HOH HOH . 
P 7 HOH A 6 906 46 HOH HOH . 
P 7 HOH A 7 907 4 HOH HOH . 
P 7 HOH A 8 908 21 HOH HOH . 
P 7 HOH A 9 909 121 HOH HOH . 
P 7 HOH A 10 910 42 HOH HOH . 
P 7 HOH A 11 911 7 HOH HOH . 
P 7 HOH A 12 912 77 HOH HOH . 
P 7 HOH A 13 913 26 HOH HOH . 
P 7 HOH A 14 914 68 HOH HOH . 
P 7 HOH A 15 915 23 HOH HOH . 
P 7 HOH A 16 916 2 HOH HOH . 
P 7 HOH A 17 917 101 HOH HOH . 
P 7 HOH A 18 918 50 HOH HOH . 
P 7 HOH A 19 919 73 HOH HOH . 
P 7 HOH A 20 920 16 HOH HOH . 
P 7 HOH A 21 921 30 HOH HOH . 
P 7 HOH A 22 922 127 HOH HOH . 
P 7 HOH A 23 923 64 HOH HOH . 
P 7 HOH A 24 924 83 HOH HOH . 
P 7 HOH A 25 925 45 HOH HOH . 
P 7 HOH A 26 926 9 HOH HOH . 
P 7 HOH A 27 927 51 HOH HOH . 
P 7 HOH A 28 928 90 HOH HOH . 
P 7 HOH A 29 929 37 HOH HOH . 
P 7 HOH A 30 930 53 HOH HOH . 
P 7 HOH A 31 931 47 HOH HOH . 
P 7 HOH A 32 932 18 HOH HOH . 
P 7 HOH A 33 933 128 HOH HOH . 
P 7 HOH A 34 934 49 HOH HOH . 
P 7 HOH A 35 935 113 HOH HOH . 
P 7 HOH A 36 936 66 HOH HOH . 
P 7 HOH A 37 937 39 HOH HOH . 
P 7 HOH A 38 938 15 HOH HOH . 
P 7 HOH A 39 939 55 HOH HOH . 
P 7 HOH A 40 940 109 HOH HOH . 
P 7 HOH A 41 941 56 HOH HOH . 
P 7 HOH A 42 942 43 HOH HOH . 
P 7 HOH A 43 943 63 HOH HOH . 
P 7 HOH A 44 944 62 HOH HOH . 
P 7 HOH A 45 945 106 HOH HOH . 
P 7 HOH A 46 946 108 HOH HOH . 
P 7 HOH A 47 947 118 HOH HOH . 
P 7 HOH A 48 948 88 HOH HOH . 
P 7 HOH A 49 949 75 HOH HOH . 
P 7 HOH A 50 950 97 HOH HOH . 
P 7 HOH A 51 951 60 HOH HOH . 
P 7 HOH A 52 952 107 HOH HOH . 
P 7 HOH A 53 953 114 HOH HOH . 
P 7 HOH A 54 954 111 HOH HOH . 
P 7 HOH A 55 955 24 HOH HOH . 
P 7 HOH A 56 956 133 HOH HOH . 
P 7 HOH A 57 957 84 HOH HOH . 
P 7 HOH A 58 958 129 HOH HOH . 
P 7 HOH A 59 959 99 HOH HOH . 
P 7 HOH A 60 960 69 HOH HOH . 
P 7 HOH A 61 961 103 HOH HOH . 
P 7 HOH A 62 962 135 HOH HOH . 
Q 7 HOH B 1 901 81 HOH HOH . 
Q 7 HOH B 2 902 58 HOH HOH . 
Q 7 HOH B 3 903 98 HOH HOH . 
Q 7 HOH B 4 904 10 HOH HOH . 
Q 7 HOH B 5 905 6 HOH HOH . 
Q 7 HOH B 6 906 44 HOH HOH . 
Q 7 HOH B 7 907 87 HOH HOH . 
Q 7 HOH B 8 908 82 HOH HOH . 
Q 7 HOH B 9 909 19 HOH HOH . 
Q 7 HOH B 10 910 17 HOH HOH . 
Q 7 HOH B 11 911 85 HOH HOH . 
Q 7 HOH B 12 912 61 HOH HOH . 
Q 7 HOH B 13 913 33 HOH HOH . 
Q 7 HOH B 14 914 100 HOH HOH . 
Q 7 HOH B 15 915 13 HOH HOH . 
Q 7 HOH B 16 916 41 HOH HOH . 
Q 7 HOH B 17 917 3 HOH HOH . 
Q 7 HOH B 18 918 92 HOH HOH . 
Q 7 HOH B 19 919 89 HOH HOH . 
Q 7 HOH B 20 920 96 HOH HOH . 
Q 7 HOH B 21 921 29 HOH HOH . 
Q 7 HOH B 22 922 78 HOH HOH . 
Q 7 HOH B 23 923 12 HOH HOH . 
Q 7 HOH B 24 924 79 HOH HOH . 
Q 7 HOH B 25 925 11 HOH HOH . 
Q 7 HOH B 26 926 8 HOH HOH . 
Q 7 HOH B 27 927 25 HOH HOH . 
Q 7 HOH B 28 928 110 HOH HOH . 
Q 7 HOH B 29 929 14 HOH HOH . 
Q 7 HOH B 30 930 54 HOH HOH . 
Q 7 HOH B 31 931 72 HOH HOH . 
Q 7 HOH B 32 932 36 HOH HOH . 
Q 7 HOH B 33 933 28 HOH HOH . 
Q 7 HOH B 34 934 22 HOH HOH . 
Q 7 HOH B 35 935 125 HOH HOH . 
Q 7 HOH B 36 936 95 HOH HOH . 
Q 7 HOH B 37 937 80 HOH HOH . 
Q 7 HOH B 38 938 40 HOH HOH . 
Q 7 HOH B 39 939 48 HOH HOH . 
Q 7 HOH B 40 940 93 HOH HOH . 
Q 7 HOH B 41 941 115 HOH HOH . 
Q 7 HOH B 42 942 76 HOH HOH . 
Q 7 HOH B 43 943 38 HOH HOH . 
Q 7 HOH B 44 944 52 HOH HOH . 
Q 7 HOH B 45 945 130 HOH HOH . 
Q 7 HOH B 46 946 65 HOH HOH . 
Q 7 HOH B 47 947 32 HOH HOH . 
Q 7 HOH B 48 948 132 HOH HOH . 
Q 7 HOH B 49 949 20 HOH HOH . 
Q 7 HOH B 50 950 126 HOH HOH . 
Q 7 HOH B 51 951 1 HOH HOH . 
Q 7 HOH B 52 952 104 HOH HOH . 
Q 7 HOH B 53 953 27 HOH HOH . 
Q 7 HOH B 54 954 34 HOH HOH . 
Q 7 HOH B 55 955 116 HOH HOH . 
Q 7 HOH B 56 956 105 HOH HOH . 
Q 7 HOH B 57 957 112 HOH HOH . 
Q 7 HOH B 58 958 59 HOH HOH . 
Q 7 HOH B 59 959 122 HOH HOH . 
Q 7 HOH B 60 960 102 HOH HOH . 
Q 7 HOH B 61 961 31 HOH HOH . 
Q 7 HOH B 62 962 35 HOH HOH . 
Q 7 HOH B 63 963 74 HOH HOH . 
Q 7 HOH B 64 964 94 HOH HOH . 
Q 7 HOH B 65 965 124 HOH HOH . 
Q 7 HOH B 66 966 67 HOH HOH . 
Q 7 HOH B 67 967 131 HOH HOH . 
Q 7 HOH B 68 968 119 HOH HOH . 
Q 7 HOH B 69 969 117 HOH HOH . 
Q 7 HOH B 70 970 91 HOH HOH . 
Q 7 HOH B 71 971 123 HOH HOH . 
Q 7 HOH B 72 972 57 HOH HOH . 
Q 7 HOH B 73 973 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 5 -25.675 29.969 -35.64 1 101.34 ? C1 GOL 807 B 1 
HETATM 2 O O1 GOL . . . N 5 -26.443 29.279 -34.676 1 105.81 ? O1 GOL 807 B 1 
HETATM 3 C C2 GOL . . . N 5 -25.063 31.243 -35.053 1 94.6 ? C2 GOL 807 B 1 
HETATM 4 O O2 GOL . . . N 5 -25.111 31.236 -33.642 1 93.21 ? O2 GOL 807 B 1 
HETATM 5 C C3 GOL . . . N 5 -23.618 31.364 -35.508 1 90.82 ? C3 GOL 807 B 1 
HETATM 6 O O3 GOL . . . N 5 -22.949 32.17 -34.571 1 90.36 ? O3 GOL 807 B 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#