data_5HPI # _model_server_result.job_id 9Bq_R0IoTgruvzIsX58q8Q _model_server_result.datetime_utc '2025-01-10 12:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5HPI # _exptl.entry_id 5HPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HPI _cell.length_a 83.49 _cell.length_b 125.659 _cell.length_c 156.673 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,Q 1 1 B,H,I,J,K,R 2 1 C,L,M,S 3 1 D,N,O,P,T 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 54 A GLY 147 1_555 A N MSE 55 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 55 A MSE 148 1_555 A N HIS 56 A HIS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C CYS 147 A CYS 240 1_555 A N MSE 148 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 148 A MSE 241 1_555 A N SER 149 A SER 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C GLY 54 B GLY 147 1_555 B N MSE 55 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C MSE 55 B MSE 148 1_555 B N HIS 56 B HIS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 B C CYS 147 B CYS 240 1_555 B N MSE 148 B MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 148 B MSE 241 1_555 B N SER 149 B SER 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 C C GLY 54 C GLY 147 1_555 C N MSE 55 C MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 C C MSE 55 C MSE 148 1_555 C N HIS 56 C HIS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 C C CYS 147 C CYS 240 1_555 C N MSE 148 C MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 C C MSE 148 C MSE 241 1_555 C N SER 149 C SER 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 D C CYS 147 D CYS 240 1_555 D N MSE 148 D MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 D C MSE 148 D MSE 241 1_555 D N SER 149 D SER 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 99 n n C1 C2 EDO sing 100 n n C1 H11 EDO sing 101 n n C1 H12 EDO sing 102 n n O1 HO1 EDO sing 103 n n C2 O2 EDO sing 104 n n C2 H21 EDO sing 105 n n C2 H22 EDO sing 106 n n O2 HO2 EDO sing 107 n n # _atom_sites.entry_id 5HPI _atom_sites.fract_transf_matrix[1][1] 0.011977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3HB A 1 301 301 3HB 3HB . F 3 EDO A 1 302 302 EDO EDO . G 3 EDO A 1 303 303 EDO EDO . H 2 3HB B 1 301 301 3HB 3HB . I 4 SO4 B 1 302 302 SO4 SO4 . J 4 SO4 B 1 303 303 SO4 SO4 . K 3 EDO B 1 304 304 EDO EDO . L 2 3HB C 1 301 301 3HB 3HB . M 4 SO4 C 1 302 302 SO4 SO4 . N 2 3HB D 1 301 301 3HB 3HB . O 4 SO4 D 1 302 302 SO4 SO4 . P 4 SO4 D 1 303 303 SO4 SO4 . Q 5 HOH A 1 401 6 HOH HOH . Q 5 HOH A 2 402 10 HOH HOH . Q 5 HOH A 3 403 11 HOH HOH . Q 5 HOH A 4 404 12 HOH HOH . Q 5 HOH A 5 405 9 HOH HOH . R 5 HOH B 1 401 8 HOH HOH . R 5 HOH B 2 402 1 HOH HOH . S 5 HOH C 1 401 2 HOH HOH . S 5 HOH C 2 402 7 HOH HOH . S 5 HOH C 3 403 13 HOH HOH . T 5 HOH D 1 401 5 HOH HOH . T 5 HOH D 2 402 3 HOH HOH . T 5 HOH D 3 403 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 -55.505 -30.36 -13.626 1 62.54 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . F 3 -56.176 -31.499 -13.075 1 62.73 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . F 3 -55.566 -29.236 -12.599 1 62.4 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . F 3 -54.452 -28.363 -12.787 1 62.3 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #