data_5HPR # _model_server_result.job_id Nwuax3gipy73c_xfhfIHsw _model_server_result.datetime_utc '2025-01-25 13:20:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5HPR # _exptl.entry_id 5HPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HPR _cell.length_a 78.245 _cell.length_b 78.245 _cell.length_c 78.245 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,4 A,B,C,D,E,F 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 16_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -39.1225 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B C THR 27 B THR 27 1_555 B N HYP 28 B HYP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale2 B C HYP 28 B HYP 28 1_555 B N LYS 29 B LYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? metalc ? metalc1 E O HOH . A HOH 108 1_555 C NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 E O HOH . A HOH 108 16_554 C NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HPR _atom_sites.fract_transf_matrix[1][1] 0.01278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA B 1 101 3 NA NA . D 4 GOL B 1 102 1 GOL GOL . E 5 HOH A 1 101 35 HOH HOH . E 5 HOH A 2 102 43 HOH HOH . E 5 HOH A 3 103 38 HOH HOH . E 5 HOH A 4 104 14 HOH HOH . E 5 HOH A 5 105 37 HOH HOH . E 5 HOH A 6 106 16 HOH HOH . E 5 HOH A 7 107 59 HOH HOH . E 5 HOH A 8 108 41 HOH HOH . E 5 HOH A 9 109 2 HOH HOH . E 5 HOH A 10 110 4 HOH HOH . E 5 HOH A 11 111 57 HOH HOH . E 5 HOH A 12 112 1 HOH HOH . E 5 HOH A 13 113 9 HOH HOH . E 5 HOH A 14 114 65 HOH HOH . E 5 HOH A 15 115 20 HOH HOH . E 5 HOH A 16 116 36 HOH HOH . E 5 HOH A 17 117 18 HOH HOH . E 5 HOH A 18 118 73 HOH HOH . E 5 HOH A 19 119 34 HOH HOH . E 5 HOH A 20 120 45 HOH HOH . E 5 HOH A 21 121 32 HOH HOH . E 5 HOH A 22 122 28 HOH HOH . E 5 HOH A 23 123 44 HOH HOH . E 5 HOH A 24 124 39 HOH HOH . F 5 HOH B 1 201 52 HOH HOH . F 5 HOH B 2 202 40 HOH HOH . F 5 HOH B 3 203 25 HOH HOH . F 5 HOH B 4 204 8 HOH HOH . F 5 HOH B 5 205 55 HOH HOH . F 5 HOH B 6 206 54 HOH HOH . F 5 HOH B 7 207 63 HOH HOH . F 5 HOH B 8 208 77 HOH HOH . F 5 HOH B 9 209 80 HOH HOH . F 5 HOH B 10 210 11 HOH HOH . F 5 HOH B 11 211 56 HOH HOH . F 5 HOH B 12 212 17 HOH HOH . F 5 HOH B 13 213 79 HOH HOH . F 5 HOH B 14 214 6 HOH HOH . F 5 HOH B 15 215 7 HOH HOH . F 5 HOH B 16 216 61 HOH HOH . F 5 HOH B 17 217 49 HOH HOH . F 5 HOH B 18 218 42 HOH HOH . F 5 HOH B 19 219 33 HOH HOH . F 5 HOH B 20 220 12 HOH HOH . F 5 HOH B 21 221 53 HOH HOH . F 5 HOH B 22 222 19 HOH HOH . F 5 HOH B 23 223 21 HOH HOH . F 5 HOH B 24 224 31 HOH HOH . F 5 HOH B 25 225 81 HOH HOH . F 5 HOH B 26 226 69 HOH HOH . F 5 HOH B 27 227 5 HOH HOH . F 5 HOH B 28 228 29 HOH HOH . F 5 HOH B 29 229 66 HOH HOH . F 5 HOH B 30 230 10 HOH HOH . F 5 HOH B 31 231 78 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -29.037 _atom_site.Cartn_y 0 _atom_site.Cartn_z -19.561 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 76.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 528 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #