data_5HPR
#
_model_server_result.job_id            vfb2H62SCUWVGqO5sexadg 
_model_server_result.datetime_utc      '2025-01-10 14:45:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hpr 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
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_entry.id    5HPR 
#
_exptl.entry_id    5HPR 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HPR 
_cell.length_a            78.245 
_cell.length_b            78.245 
_cell.length_c            78.245 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5HPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,4 
A,B,C,D,E,F 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
4 'crystal symmetry operation' 16_554 x,-y,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 0 -39.1225 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 B C THR 27 B THR 27 1_555 B N HYP 28 B HYP 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale2 B C HYP 28 B HYP 28 1_555 B N LYS 29 B LYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? 
metalc ? metalc1 E O HOH . A HOH 108 1_555 C NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc2 E O HOH . A HOH 108 16_554 C NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 114 n n 
C1 C2 GOL sing 115 n n 
C1 H11 GOL sing 116 n n 
C1 H12 GOL sing 117 n n 
O1 HO1 GOL sing 118 n n 
C2 O2 GOL sing 119 n n 
C2 C3 GOL sing 120 n n 
C2 H2 GOL sing 121 n n 
O2 HO2 GOL sing 122 n n 
C3 O3 GOL sing 123 n n 
C3 H31 GOL sing 124 n n 
C3 H32 GOL sing 125 n n 
O3 HO3 GOL sing 126 n n 
#
_atom_sites.entry_id                     5HPR 
_atom_sites.fract_transf_matrix[1][1]    0.01278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01278 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01278 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NA B 1 101 3 NA NA . 
D 4 GOL B 1 102 1 GOL GOL . 
E 5 HOH A 1 101 35 HOH HOH . 
E 5 HOH A 2 102 43 HOH HOH . 
E 5 HOH A 3 103 38 HOH HOH . 
E 5 HOH A 4 104 14 HOH HOH . 
E 5 HOH A 5 105 37 HOH HOH . 
E 5 HOH A 6 106 16 HOH HOH . 
E 5 HOH A 7 107 59 HOH HOH . 
E 5 HOH A 8 108 41 HOH HOH . 
E 5 HOH A 9 109 2 HOH HOH . 
E 5 HOH A 10 110 4 HOH HOH . 
E 5 HOH A 11 111 57 HOH HOH . 
E 5 HOH A 12 112 1 HOH HOH . 
E 5 HOH A 13 113 9 HOH HOH . 
E 5 HOH A 14 114 65 HOH HOH . 
E 5 HOH A 15 115 20 HOH HOH . 
E 5 HOH A 16 116 36 HOH HOH . 
E 5 HOH A 17 117 18 HOH HOH . 
E 5 HOH A 18 118 73 HOH HOH . 
E 5 HOH A 19 119 34 HOH HOH . 
E 5 HOH A 20 120 45 HOH HOH . 
E 5 HOH A 21 121 32 HOH HOH . 
E 5 HOH A 22 122 28 HOH HOH . 
E 5 HOH A 23 123 44 HOH HOH . 
E 5 HOH A 24 124 39 HOH HOH . 
F 5 HOH B 1 201 52 HOH HOH . 
F 5 HOH B 2 202 40 HOH HOH . 
F 5 HOH B 3 203 25 HOH HOH . 
F 5 HOH B 4 204 8 HOH HOH . 
F 5 HOH B 5 205 55 HOH HOH . 
F 5 HOH B 6 206 54 HOH HOH . 
F 5 HOH B 7 207 63 HOH HOH . 
F 5 HOH B 8 208 77 HOH HOH . 
F 5 HOH B 9 209 80 HOH HOH . 
F 5 HOH B 10 210 11 HOH HOH . 
F 5 HOH B 11 211 56 HOH HOH . 
F 5 HOH B 12 212 17 HOH HOH . 
F 5 HOH B 13 213 79 HOH HOH . 
F 5 HOH B 14 214 6 HOH HOH . 
F 5 HOH B 15 215 7 HOH HOH . 
F 5 HOH B 16 216 61 HOH HOH . 
F 5 HOH B 17 217 49 HOH HOH . 
F 5 HOH B 18 218 42 HOH HOH . 
F 5 HOH B 19 219 33 HOH HOH . 
F 5 HOH B 20 220 12 HOH HOH . 
F 5 HOH B 21 221 53 HOH HOH . 
F 5 HOH B 22 222 19 HOH HOH . 
F 5 HOH B 23 223 21 HOH HOH . 
F 5 HOH B 24 224 31 HOH HOH . 
F 5 HOH B 25 225 81 HOH HOH . 
F 5 HOH B 26 226 69 HOH HOH . 
F 5 HOH B 27 227 5 HOH HOH . 
F 5 HOH B 28 228 29 HOH HOH . 
F 5 HOH B 29 229 66 HOH HOH . 
F 5 HOH B 30 230 10 HOH HOH . 
F 5 HOH B 31 231 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -8.688 1.622 -10.122 1 28.07 ? C1 GOL 102 B 1 
HETATM 2 O O1 GOL . . . D 4 -7.951 2.586 -9.08 1 38.71 ? O1 GOL 102 B 1 
HETATM 3 C C2 GOL . . . D 4 -8.006 0.203 -10.266 1 18.3 ? C2 GOL 102 B 1 
HETATM 4 O O2 GOL . . . D 4 -8.447 -0.729 -9.291 1 78.3 ? O2 GOL 102 B 1 
HETATM 5 C C3 GOL . . . D 4 -8.324 -0.357 -11.726 1 42.02 ? C3 GOL 102 B 1 
HETATM 6 O O3 GOL . . . D 4 -9.788 -0.609 -12.005 1 21.73 ? O3 GOL 102 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
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