data_5HPY
#
_model_server_result.job_id            8_e2e5VGyYMHiYHAyyPeHg 
_model_server_result.datetime_utc      '2024-10-11 06:18:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hpy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":203}' 
#
_entry.id    5HPY 
#
_exptl.entry_id    5HPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HPY 
_cell.length_a            114.055 
_cell.length_b            90.762 
_cell.length_c            93.582 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG1 THR 23 B THR 19 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc2 B OG1 THR 41 B THR 37 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc3 E MG MGF . B MGF 201 1_555 G O2B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc4 E MG MGF . B MGF 201 1_555 M O HOH . B HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc5 F MG MG . B MG 202 1_555 G O3B GDP . B GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc6 F MG MG . B MG 202 1_555 M O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc7 F MG MG . B MG 202 1_555 M O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc8 D OG1 THR 23 F THR 19 1_555 J MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc9 D OG1 THR 41 F THR 37 1_555 J MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc10 D OH TYR 46 F TYR 42 1_555 K MG MG . F MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc11 D OD2 ASP 63 F ASP 59 1_555 K MG MG . F MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? 
metalc ? metalc12 H MG MGF . F MGF 201 1_555 I O3B GDP . F GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc13 H MG MGF . F MGF 201 1_555 O O HOH . F HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc14 I O2B GDP . F GDP 202 1_555 J MG MG . F MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc15 J MG MG . F MG 203 1_555 O O HOH . F HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc16 J MG MG . F MG 203 1_555 O O HOH . F HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc17 K MG MG . F MG 204 1_555 O O HOH . F HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5HPY 
_atom_sites.fract_transf_matrix[1][1]    0.008768 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MGF B 1 201 181 MGF MGF . 
F 4 MG B 1 202 182 MG MG . 
G 5 GDP B 1 203 183 GDP GDP . 
H 3 MGF F 1 201 399 MGF MGF . 
I 5 GDP F 1 202 182 GDP GDP . 
J 4 MG F 1 203 183 MG MG . 
K 4 MG F 1 204 184 MG MG . 
L 6 HOH A 1 501 422 HOH HOH . 
L 6 HOH A 2 502 424 HOH HOH . 
L 6 HOH A 3 503 412 HOH HOH . 
L 6 HOH A 4 504 402 HOH HOH . 
L 6 HOH A 5 505 410 HOH HOH . 
L 6 HOH A 6 506 419 HOH HOH . 
L 6 HOH A 7 507 414 HOH HOH . 
L 6 HOH A 8 508 400 HOH HOH . 
L 6 HOH A 9 509 2 HOH HOH . 
L 6 HOH A 10 510 417 HOH HOH . 
L 6 HOH A 11 511 403 HOH HOH . 
L 6 HOH A 12 512 411 HOH HOH . 
L 6 HOH A 13 513 399 HOH HOH . 
L 6 HOH A 14 514 406 HOH HOH . 
L 6 HOH A 15 515 1 HOH HOH . 
L 6 HOH A 16 516 418 HOH HOH . 
L 6 HOH A 17 517 409 HOH HOH . 
L 6 HOH A 18 518 405 HOH HOH . 
L 6 HOH A 19 519 427 HOH HOH . 
L 6 HOH A 20 520 421 HOH HOH . 
L 6 HOH A 21 521 408 HOH HOH . 
L 6 HOH A 22 522 416 HOH HOH . 
L 6 HOH A 23 523 413 HOH HOH . 
L 6 HOH A 24 524 401 HOH HOH . 
L 6 HOH A 25 525 415 HOH HOH . 
L 6 HOH A 26 526 3 HOH HOH . 
L 6 HOH A 27 527 426 HOH HOH . 
L 6 HOH A 28 528 420 HOH HOH . 
M 6 HOH B 1 301 6 HOH HOH . 
M 6 HOH B 2 302 184 HOH HOH . 
M 6 HOH B 3 303 207 HOH HOH . 
M 6 HOH B 4 304 9 HOH HOH . 
M 6 HOH B 5 305 190 HOH HOH . 
M 6 HOH B 6 306 202 HOH HOH . 
M 6 HOH B 7 307 407 HOH HOH . 
M 6 HOH B 8 308 215 HOH HOH . 
M 6 HOH B 9 309 217 HOH HOH . 
M 6 HOH B 10 310 223 HOH HOH . 
M 6 HOH B 11 311 187 HOH HOH . 
M 6 HOH B 12 312 213 HOH HOH . 
M 6 HOH B 13 313 189 HOH HOH . 
M 6 HOH B 14 314 192 HOH HOH . 
M 6 HOH B 15 315 7 HOH HOH . 
M 6 HOH B 16 316 199 HOH HOH . 
M 6 HOH B 17 317 208 HOH HOH . 
M 6 HOH B 18 318 185 HOH HOH . 
M 6 HOH B 19 319 188 HOH HOH . 
M 6 HOH B 20 320 195 HOH HOH . 
M 6 HOH B 21 321 191 HOH HOH . 
M 6 HOH B 22 322 404 HOH HOH . 
M 6 HOH B 23 323 222 HOH HOH . 
M 6 HOH B 24 324 197 HOH HOH . 
M 6 HOH B 25 325 198 HOH HOH . 
M 6 HOH B 26 326 212 HOH HOH . 
M 6 HOH B 27 327 214 HOH HOH . 
M 6 HOH B 28 328 194 HOH HOH . 
M 6 HOH B 29 329 218 HOH HOH . 
M 6 HOH B 30 330 8 HOH HOH . 
M 6 HOH B 31 331 196 HOH HOH . 
M 6 HOH B 32 332 226 HOH HOH . 
M 6 HOH B 33 333 216 HOH HOH . 
M 6 HOH B 34 334 210 HOH HOH . 
M 6 HOH B 35 335 211 HOH HOH . 
M 6 HOH B 36 336 200 HOH HOH . 
M 6 HOH B 37 337 201 HOH HOH . 
M 6 HOH B 38 338 193 HOH HOH . 
M 6 HOH B 39 339 224 HOH HOH . 
M 6 HOH B 40 340 227 HOH HOH . 
M 6 HOH B 41 341 229 HOH HOH . 
M 6 HOH B 42 342 5 HOH HOH . 
M 6 HOH B 43 343 206 HOH HOH . 
M 6 HOH B 44 344 225 HOH HOH . 
M 6 HOH B 45 345 203 HOH HOH . 
N 6 HOH D 1 501 401 HOH HOH . 
N 6 HOH D 2 502 407 HOH HOH . 
N 6 HOH D 3 503 413 HOH HOH . 
N 6 HOH D 4 504 410 HOH HOH . 
N 6 HOH D 5 505 408 HOH HOH . 
N 6 HOH D 6 506 415 HOH HOH . 
N 6 HOH D 7 507 405 HOH HOH . 
N 6 HOH D 8 508 411 HOH HOH . 
N 6 HOH D 9 509 403 HOH HOH . 
N 6 HOH D 10 510 409 HOH HOH . 
N 6 HOH D 11 511 417 HOH HOH . 
N 6 HOH D 12 512 421 HOH HOH . 
N 6 HOH D 13 513 402 HOH HOH . 
N 6 HOH D 14 514 400 HOH HOH . 
N 6 HOH D 15 515 412 HOH HOH . 
N 6 HOH D 16 516 422 HOH HOH . 
N 6 HOH D 17 517 414 HOH HOH . 
N 6 HOH D 18 518 418 HOH HOH . 
N 6 HOH D 19 519 420 HOH HOH . 
N 6 HOH D 20 520 416 HOH HOH . 
O 6 HOH F 1 301 207 HOH HOH . 
O 6 HOH F 2 302 226 HOH HOH . 
O 6 HOH F 3 303 212 HOH HOH . 
O 6 HOH F 4 304 224 HOH HOH . 
O 6 HOH F 5 305 210 HOH HOH . 
O 6 HOH F 6 306 225 HOH HOH . 
O 6 HOH F 7 307 185 HOH HOH . 
O 6 HOH F 8 308 404 HOH HOH . 
O 6 HOH F 9 309 206 HOH HOH . 
O 6 HOH F 10 310 215 HOH HOH . 
O 6 HOH F 11 311 219 HOH HOH . 
O 6 HOH F 12 312 193 HOH HOH . 
O 6 HOH F 13 313 222 HOH HOH . 
O 6 HOH F 14 314 195 HOH HOH . 
O 6 HOH F 15 315 199 HOH HOH . 
O 6 HOH F 16 316 196 HOH HOH . 
O 6 HOH F 17 317 194 HOH HOH . 
O 6 HOH F 18 318 186 HOH HOH . 
O 6 HOH F 19 319 197 HOH HOH . 
O 6 HOH F 20 320 198 HOH HOH . 
O 6 HOH F 21 321 214 HOH HOH . 
O 6 HOH F 22 322 188 HOH HOH . 
O 6 HOH F 23 323 201 HOH HOH . 
O 6 HOH F 24 324 208 HOH HOH . 
O 6 HOH F 25 325 220 HOH HOH . 
O 6 HOH F 26 326 202 HOH HOH . 
O 6 HOH F 27 327 204 HOH HOH . 
O 6 HOH F 28 328 203 HOH HOH . 
O 6 HOH F 29 329 4 HOH HOH . 
O 6 HOH F 30 330 205 HOH HOH . 
O 6 HOH F 31 331 217 HOH HOH . 
O 6 HOH F 32 332 209 HOH HOH . 
O 6 HOH F 33 333 218 HOH HOH . 
O 6 HOH F 34 334 227 HOH HOH . 
O 6 HOH F 35 335 200 HOH HOH . 
O 6 HOH F 36 336 406 HOH HOH . 
O 6 HOH F 37 337 223 HOH HOH . 
O 6 HOH F 38 338 190 HOH HOH . 
O 6 HOH F 39 339 189 HOH HOH . 
O 6 HOH F 40 340 191 HOH HOH . 
O 6 HOH F 41 341 192 HOH HOH . 
O 6 HOH F 42 342 221 HOH HOH . 
O 6 HOH F 43 343 211 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -49.892 
_atom_site.Cartn_y               37.091 
_atom_site.Cartn_z               17.389 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.66 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           203 
_atom_site.auth_asym_id          F 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#