data_5HQ1 # _model_server_result.job_id EUB7N2-XhKbFYHvQPO7kEQ _model_server_result.datetime_utc '2024-11-16 06:33:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 5HQ1 # _exptl.entry_id 5HQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 88.9 _cell.angle_beta 72.31 _cell.angle_gamma 68.46 _cell.entry_id 5HQ1 _cell.length_a 26.777 _cell.length_b 31.382 _cell.length_c 33.865 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 F PT PT . A PT 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 G PT PT . A PT 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc3 A NE2 HIS 15 A HIS 15 1_555 H PT PT . A PT 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc4 A ND1 HIS 15 A HIS 15 1_555 I PT PT . A PT 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HQ1 _atom_sites.fract_transf_matrix[1][1] 0.037345 _atom_sites.fract_transf_matrix[1][2] -0.014737 _atom_sites.fract_transf_matrix[1][3] -0.013518 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034257 _atom_sites.fract_transf_matrix[2][3] 0.003587 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 203 DMS DMS . C 3 CL A 1 202 205 CL CL . D 4 NO3 A 1 203 213 NO3 NO3 . E 4 NO3 A 1 204 220 NO3 NO3 . F 5 PT A 1 205 1 PT PT . G 5 PT A 1 206 3 PT PT . H 5 PT A 1 207 4 PT PT . I 5 PT A 1 208 1 PT PT . J 3 CL A 1 209 1 CL CL . K 4 NO3 A 1 210 2 NO3 NO3 . L 4 NO3 A 1 211 3 NO3 NO3 . M 3 CL A 1 212 1 CL CL . N 6 HOH A 1 301 352 HOH HOH . N 6 HOH A 2 302 350 HOH HOH . N 6 HOH A 3 303 361 HOH HOH . N 6 HOH A 4 304 309 HOH HOH . N 6 HOH A 5 305 304 HOH HOH . N 6 HOH A 6 306 362 HOH HOH . N 6 HOH A 7 307 348 HOH HOH . N 6 HOH A 8 308 319 HOH HOH . N 6 HOH A 9 309 335 HOH HOH . N 6 HOH A 10 310 320 HOH HOH . N 6 HOH A 11 311 381 HOH HOH . N 6 HOH A 12 312 346 HOH HOH . N 6 HOH A 13 313 393 HOH HOH . N 6 HOH A 14 314 342 HOH HOH . N 6 HOH A 15 315 345 HOH HOH . N 6 HOH A 16 316 302 HOH HOH . N 6 HOH A 17 317 383 HOH HOH . N 6 HOH A 18 318 359 HOH HOH . N 6 HOH A 19 319 380 HOH HOH . N 6 HOH A 20 320 341 HOH HOH . N 6 HOH A 21 321 388 HOH HOH . N 6 HOH A 22 322 372 HOH HOH . N 6 HOH A 23 323 336 HOH HOH . N 6 HOH A 24 324 306 HOH HOH . N 6 HOH A 25 325 365 HOH HOH . N 6 HOH A 26 326 330 HOH HOH . N 6 HOH A 27 327 333 HOH HOH . N 6 HOH A 28 328 314 HOH HOH . N 6 HOH A 29 329 321 HOH HOH . N 6 HOH A 30 330 364 HOH HOH . N 6 HOH A 31 331 339 HOH HOH . N 6 HOH A 32 332 371 HOH HOH . N 6 HOH A 33 333 310 HOH HOH . N 6 HOH A 34 334 305 HOH HOH . N 6 HOH A 35 335 379 HOH HOH . N 6 HOH A 36 336 358 HOH HOH . N 6 HOH A 37 337 329 HOH HOH . N 6 HOH A 38 338 327 HOH HOH . N 6 HOH A 39 339 311 HOH HOH . N 6 HOH A 40 340 351 HOH HOH . N 6 HOH A 41 341 375 HOH HOH . N 6 HOH A 42 342 301 HOH HOH . N 6 HOH A 43 343 356 HOH HOH . N 6 HOH A 44 344 303 HOH HOH . N 6 HOH A 45 345 366 HOH HOH . N 6 HOH A 46 346 368 HOH HOH . N 6 HOH A 47 347 347 HOH HOH . N 6 HOH A 48 348 340 HOH HOH . N 6 HOH A 49 349 387 HOH HOH . N 6 HOH A 50 350 322 HOH HOH . N 6 HOH A 51 351 360 HOH HOH . N 6 HOH A 52 352 337 HOH HOH . N 6 HOH A 53 353 332 HOH HOH . N 6 HOH A 54 354 374 HOH HOH . N 6 HOH A 55 355 370 HOH HOH . N 6 HOH A 56 356 382 HOH HOH . N 6 HOH A 57 357 386 HOH HOH . N 6 HOH A 58 358 385 HOH HOH . N 6 HOH A 59 359 367 HOH HOH . N 6 HOH A 60 360 357 HOH HOH . N 6 HOH A 61 361 338 HOH HOH . N 6 HOH A 62 362 373 HOH HOH . N 6 HOH A 63 363 315 HOH HOH . N 6 HOH A 64 364 328 HOH HOH . N 6 HOH A 65 365 376 HOH HOH . N 6 HOH A 66 366 307 HOH HOH . N 6 HOH A 67 367 384 HOH HOH . N 6 HOH A 68 368 316 HOH HOH . N 6 HOH A 69 369 323 HOH HOH . N 6 HOH A 70 370 308 HOH HOH . N 6 HOH A 71 371 369 HOH HOH . N 6 HOH A 72 372 394 HOH HOH . N 6 HOH A 73 373 313 HOH HOH . N 6 HOH A 74 374 378 HOH HOH . N 6 HOH A 75 375 318 HOH HOH . N 6 HOH A 76 376 312 HOH HOH . N 6 HOH A 77 377 363 HOH HOH . N 6 HOH A 78 378 349 HOH HOH . N 6 HOH A 79 379 334 HOH HOH . N 6 HOH A 80 380 344 HOH HOH . N 6 HOH A 81 381 353 HOH HOH . N 6 HOH A 82 382 326 HOH HOH . N 6 HOH A 83 383 343 HOH HOH . N 6 HOH A 84 384 324 HOH HOH . N 6 HOH A 85 385 391 HOH HOH . N 6 HOH A 86 386 390 HOH HOH . N 6 HOH A 87 387 355 HOH HOH . N 6 HOH A 88 388 317 HOH HOH . N 6 HOH A 89 389 325 HOH HOH . N 6 HOH A 90 390 392 HOH HOH . N 6 HOH A 91 391 331 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -14.023 _atom_site.Cartn_y -13.796 _atom_site.Cartn_z -18.037 _atom_site.occupancy 0.29 _atom_site.B_iso_or_equiv 11.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 208 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #