data_5HQ3 # _model_server_result.job_id vvO9NvIiRiO4svdhCStCtA _model_server_result.datetime_utc '2024-11-23 11:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5HQ3 # _exptl.entry_id 5HQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 124.076 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HQ3 _cell.length_a 89.534 _cell.length_b 89.534 _cell.length_c 395.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 70 A CYS 69 1_555 A SG CYS 97 A CYS 96 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 258 A CYS 257 1_555 A SG CYS 273 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 410 A CYS 409 1_555 A SG CYS 530 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 B SG CYS 70 B CYS 69 1_555 B SG CYS 97 B CYS 96 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 B SG CYS 258 B CYS 257 1_555 B SG CYS 273 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 410 B CYS 409 1_555 B SG CYS 530 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A OG SER 204 A SER 203 1_555 C P1 VX . A VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale2 B OG SER 204 B SER 203 1_555 E P1 VX . B VX 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? # _chem_comp.formula 'C3 H9 O3 P' _chem_comp.formula_weight 124.076 _chem_comp.id VX _chem_comp.mon_nstd_flag . _chem_comp.name 'O-ETHYLMETHYLPHOSPHONIC ACID ESTER GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 VX doub 401 n n P1 O2 VX sing 402 n n P1 C1 VX sing 403 n n O2 C2 VX sing 404 n n C1 H1 VX sing 405 n n C1 H2 VX sing 406 n n C1 H3 VX sing 407 n n C2 C3 VX sing 408 n n C2 H21 VX sing 409 n n C2 H22 VX sing 410 n n C3 H31 VX sing 411 n n C3 H32 VX sing 412 n n C3 H33 VX sing 413 n n P1 O3 VX sing 414 n n O3 H3O VX sing 415 n n # _atom_sites.entry_id 5HQ3 _atom_sites.fract_transf_matrix[1][1] 0.011169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 VX A 1 601 999 VX VX . D 4 MES A 1 602 401 MES MES . E 3 VX B 1 601 999 VX VX . F 4 MES B 1 602 401 MES MES . G 5 HOH A 1 701 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 VX . . . E 3 -43.454 8.791 -40.178 1 36.88 ? P1 VX 601 B 1 HETATM 2 O O1 VX . . . E 3 -43.139 9.743 -41.263 1 34.46 ? O1 VX 601 B 1 HETATM 3 O O2 VX . . . E 3 -43.166 7.284 -40.752 1 46.66 ? O2 VX 601 B 1 HETATM 4 C C1 VX . . . E 3 -42.317 8.947 -38.837 1 32.82 ? C1 VX 601 B 1 HETATM 5 C C2 VX . . . E 3 -43.894 6.732 -41.858 1 51.08 ? C2 VX 601 B 1 HETATM 6 C C3 VX . . . E 3 -42.835 6.588 -42.924 1 51.55 ? C3 VX 601 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #