data_5HQE # _model_server_result.job_id LmIrQQimxGu7lKv97bLIPA _model_server_result.datetime_utc '2024-11-08 18:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5HQE # _exptl.entry_id 5HQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HQE _cell.length_a 90.624 _cell.length_b 90.624 _cell.length_c 123.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 110 n n N1 C10 FMN doub 111 n n C2 O2 FMN doub 112 n n C2 N3 FMN sing 113 n n N3 C4 FMN sing 114 n n N3 HN3 FMN sing 115 n n C4 O4 FMN doub 116 n n C4 C4A FMN sing 117 n n C4A N5 FMN doub 118 n n C4A C10 FMN sing 119 n n N5 C5A FMN sing 120 n n C5A C6 FMN doub 121 n y C5A C9A FMN sing 122 n y C6 C7 FMN sing 123 n y C6 H6 FMN sing 124 n n C7 C7M FMN sing 125 n n C7 C8 FMN doub 126 n y C7M HM71 FMN sing 127 n n C7M HM72 FMN sing 128 n n C7M HM73 FMN sing 129 n n C8 C8M FMN sing 130 n n C8 C9 FMN sing 131 n y C8M HM81 FMN sing 132 n n C8M HM82 FMN sing 133 n n C8M HM83 FMN sing 134 n n C9 C9A FMN doub 135 n y C9 H9 FMN sing 136 n n C9A N10 FMN sing 137 n n N10 C10 FMN sing 138 n n N10 C1' FMN sing 139 n n C1' C2' FMN sing 140 n n C1' "H1'1" FMN sing 141 n n C1' "H1'2" FMN sing 142 n n C2' O2' FMN sing 143 n n C2' C3' FMN sing 144 n n C2' H2' FMN sing 145 n n O2' HO2' FMN sing 146 n n C3' O3' FMN sing 147 n n C3' C4' FMN sing 148 n n C3' H3' FMN sing 149 n n O3' HO3' FMN sing 150 n n C4' O4' FMN sing 151 n n C4' C5' FMN sing 152 n n C4' H4' FMN sing 153 n n O4' HO4' FMN sing 154 n n C5' O5' FMN sing 155 n n C5' "H5'1" FMN sing 156 n n C5' "H5'2" FMN sing 157 n n O5' P FMN sing 158 n n P O1P FMN doub 159 n n P O2P FMN sing 160 n n P O3P FMN sing 161 n n O2P HOP2 FMN sing 162 n n O3P HOP3 FMN sing 163 n n # _atom_sites.entry_id 5HQE _atom_sites.fract_transf_matrix[1][1] 0.011035 _atom_sites.fract_transf_matrix[1][2] 0.006371 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 64B A 1 401 1 64B 18T . C 3 FMN A 1 402 1 FMN FMN . D 4 ORO A 1 403 1 ORO ORO . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 3 SO4 SO4 . H 6 ACT A 1 407 1 ACT ACT . I 6 ACT A 1 408 2 ACT ACT . J 6 ACT A 1 409 3 ACT ACT . K 7 HOH A 1 501 177 HOH HOH . K 7 HOH A 2 502 151 HOH HOH . K 7 HOH A 3 503 152 HOH HOH . K 7 HOH A 4 504 22 HOH HOH . K 7 HOH A 5 505 128 HOH HOH . K 7 HOH A 6 506 141 HOH HOH . K 7 HOH A 7 507 106 HOH HOH . K 7 HOH A 8 508 170 HOH HOH . K 7 HOH A 9 509 92 HOH HOH . K 7 HOH A 10 510 59 HOH HOH . K 7 HOH A 11 511 33 HOH HOH . K 7 HOH A 12 512 18 HOH HOH . K 7 HOH A 13 513 163 HOH HOH . K 7 HOH A 14 514 3 HOH HOH . K 7 HOH A 15 515 129 HOH HOH . K 7 HOH A 16 516 48 HOH HOH . K 7 HOH A 17 517 103 HOH HOH . K 7 HOH A 18 518 8 HOH HOH . K 7 HOH A 19 519 71 HOH HOH . K 7 HOH A 20 520 104 HOH HOH . K 7 HOH A 21 521 75 HOH HOH . K 7 HOH A 22 522 127 HOH HOH . K 7 HOH A 23 523 150 HOH HOH . K 7 HOH A 24 524 118 HOH HOH . K 7 HOH A 25 525 142 HOH HOH . K 7 HOH A 26 526 45 HOH HOH . K 7 HOH A 27 527 30 HOH HOH . K 7 HOH A 28 528 246 HOH HOH . K 7 HOH A 29 529 35 HOH HOH . K 7 HOH A 30 530 74 HOH HOH . K 7 HOH A 31 531 130 HOH HOH . K 7 HOH A 32 532 24 HOH HOH . K 7 HOH A 33 533 13 HOH HOH . K 7 HOH A 34 534 43 HOH HOH . K 7 HOH A 35 535 101 HOH HOH . K 7 HOH A 36 536 53 HOH HOH . K 7 HOH A 37 537 254 HOH HOH . K 7 HOH A 38 538 244 HOH HOH . K 7 HOH A 39 539 25 HOH HOH . K 7 HOH A 40 540 38 HOH HOH . K 7 HOH A 41 541 86 HOH HOH . K 7 HOH A 42 542 79 HOH HOH . K 7 HOH A 43 543 58 HOH HOH . K 7 HOH A 44 544 100 HOH HOH . K 7 HOH A 45 545 242 HOH HOH . K 7 HOH A 46 546 10 HOH HOH . K 7 HOH A 47 547 80 HOH HOH . K 7 HOH A 48 548 61 HOH HOH . K 7 HOH A 49 549 57 HOH HOH . K 7 HOH A 50 550 143 HOH HOH . K 7 HOH A 51 551 73 HOH HOH . K 7 HOH A 52 552 28 HOH HOH . K 7 HOH A 53 553 63 HOH HOH . K 7 HOH A 54 554 19 HOH HOH . K 7 HOH A 55 555 83 HOH HOH . K 7 HOH A 56 556 81 HOH HOH . K 7 HOH A 57 557 55 HOH HOH . K 7 HOH A 58 558 162 HOH HOH . K 7 HOH A 59 559 157 HOH HOH . K 7 HOH A 60 560 137 HOH HOH . K 7 HOH A 61 561 67 HOH HOH . K 7 HOH A 62 562 17 HOH HOH . K 7 HOH A 63 563 70 HOH HOH . K 7 HOH A 64 564 72 HOH HOH . K 7 HOH A 65 565 40 HOH HOH . K 7 HOH A 66 566 64 HOH HOH . K 7 HOH A 67 567 47 HOH HOH . K 7 HOH A 68 568 69 HOH HOH . K 7 HOH A 69 569 4 HOH HOH . K 7 HOH A 70 570 123 HOH HOH . K 7 HOH A 71 571 179 HOH HOH . K 7 HOH A 72 572 94 HOH HOH . K 7 HOH A 73 573 125 HOH HOH . K 7 HOH A 74 574 112 HOH HOH . K 7 HOH A 75 575 140 HOH HOH . K 7 HOH A 76 576 36 HOH HOH . K 7 HOH A 77 577 54 HOH HOH . K 7 HOH A 78 578 133 HOH HOH . K 7 HOH A 79 579 32 HOH HOH . K 7 HOH A 80 580 26 HOH HOH . K 7 HOH A 81 581 49 HOH HOH . K 7 HOH A 82 582 20 HOH HOH . K 7 HOH A 83 583 82 HOH HOH . K 7 HOH A 84 584 46 HOH HOH . K 7 HOH A 85 585 14 HOH HOH . K 7 HOH A 86 586 11 HOH HOH . K 7 HOH A 87 587 66 HOH HOH . K 7 HOH A 88 588 62 HOH HOH . K 7 HOH A 89 589 78 HOH HOH . K 7 HOH A 90 590 7 HOH HOH . K 7 HOH A 91 591 52 HOH HOH . K 7 HOH A 92 592 109 HOH HOH . K 7 HOH A 93 593 132 HOH HOH . K 7 HOH A 94 594 108 HOH HOH . K 7 HOH A 95 595 122 HOH HOH . K 7 HOH A 96 596 156 HOH HOH . K 7 HOH A 97 597 149 HOH HOH . K 7 HOH A 98 598 34 HOH HOH . K 7 HOH A 99 599 255 HOH HOH . K 7 HOH A 100 600 15 HOH HOH . K 7 HOH A 101 601 6 HOH HOH . K 7 HOH A 102 602 116 HOH HOH . K 7 HOH A 103 603 9 HOH HOH . K 7 HOH A 104 604 165 HOH HOH . K 7 HOH A 105 605 191 HOH HOH . K 7 HOH A 106 606 243 HOH HOH . K 7 HOH A 107 607 136 HOH HOH . K 7 HOH A 108 608 84 HOH HOH . K 7 HOH A 109 609 253 HOH HOH . K 7 HOH A 110 610 1 HOH HOH . K 7 HOH A 111 611 93 HOH HOH . K 7 HOH A 112 612 65 HOH HOH . K 7 HOH A 113 613 44 HOH HOH . K 7 HOH A 114 614 60 HOH HOH . K 7 HOH A 115 615 76 HOH HOH . K 7 HOH A 116 616 102 HOH HOH . K 7 HOH A 117 617 16 HOH HOH . K 7 HOH A 118 618 56 HOH HOH . K 7 HOH A 119 619 12 HOH HOH . K 7 HOH A 120 620 31 HOH HOH . K 7 HOH A 121 621 126 HOH HOH . K 7 HOH A 122 622 50 HOH HOH . K 7 HOH A 123 623 42 HOH HOH . K 7 HOH A 124 624 27 HOH HOH . K 7 HOH A 125 625 51 HOH HOH . K 7 HOH A 126 626 154 HOH HOH . K 7 HOH A 127 627 2 HOH HOH . K 7 HOH A 128 628 29 HOH HOH . K 7 HOH A 129 629 155 HOH HOH . K 7 HOH A 130 630 119 HOH HOH . K 7 HOH A 131 631 41 HOH HOH . K 7 HOH A 132 632 88 HOH HOH . K 7 HOH A 133 633 77 HOH HOH . K 7 HOH A 134 634 68 HOH HOH . K 7 HOH A 135 635 120 HOH HOH . K 7 HOH A 136 636 107 HOH HOH . K 7 HOH A 137 637 114 HOH HOH . K 7 HOH A 138 638 245 HOH HOH . K 7 HOH A 139 639 99 HOH HOH . K 7 HOH A 140 640 256 HOH HOH . K 7 HOH A 141 641 250 HOH HOH . K 7 HOH A 142 642 98 HOH HOH . K 7 HOH A 143 643 110 HOH HOH . K 7 HOH A 144 644 37 HOH HOH . K 7 HOH A 145 645 159 HOH HOH . K 7 HOH A 146 646 5 HOH HOH . K 7 HOH A 147 647 240 HOH HOH . K 7 HOH A 148 648 96 HOH HOH . K 7 HOH A 149 649 249 HOH HOH . K 7 HOH A 150 650 236 HOH HOH . K 7 HOH A 151 651 39 HOH HOH . K 7 HOH A 152 652 238 HOH HOH . K 7 HOH A 153 653 252 HOH HOH . K 7 HOH A 154 654 235 HOH HOH . K 7 HOH A 155 655 111 HOH HOH . K 7 HOH A 156 656 138 HOH HOH . K 7 HOH A 157 657 148 HOH HOH . K 7 HOH A 158 658 90 HOH HOH . K 7 HOH A 159 659 135 HOH HOH . K 7 HOH A 160 660 146 HOH HOH . K 7 HOH A 161 661 139 HOH HOH . K 7 HOH A 162 662 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -34.965 -24.259 -8.745 1 11.22 ? N1 FMN 402 A 1 HETATM 2 C C2 FMN . . . C 3 -35.779 -24.215 -9.83 1 12.36 ? C2 FMN 402 A 1 HETATM 3 O O2 FMN . . . C 3 -35.38 -24.725 -10.899 1 12.03 ? O2 FMN 402 A 1 HETATM 4 N N3 FMN . . . C 3 -36.997 -23.645 -9.802 1 11.41 ? N3 FMN 402 A 1 HETATM 5 C C4 FMN . . . C 3 -37.496 -23.078 -8.697 1 12.38 ? C4 FMN 402 A 1 HETATM 6 O O4 FMN . . . C 3 -38.632 -22.557 -8.703 1 13.16 ? O4 FMN 402 A 1 HETATM 7 C C4A FMN . . . C 3 -36.67 -23.084 -7.466 1 12.03 ? C4A FMN 402 A 1 HETATM 8 N N5 FMN . . . C 3 -37.1 -22.533 -6.309 1 12.61 ? N5 FMN 402 A 1 HETATM 9 C C5A FMN . . . C 3 -36.322 -22.553 -5.202 1 11.26 ? C5A FMN 402 A 1 HETATM 10 C C6 FMN . . . C 3 -36.786 -21.98 -4.023 1 11.83 ? C6 FMN 402 A 1 HETATM 11 C C7 FMN . . . C 3 -35.993 -21.997 -2.881 1 12.03 ? C7 FMN 402 A 1 HETATM 12 C C7M FMN . . . C 3 -36.499 -21.375 -1.606 1 13.54 ? C7M FMN 402 A 1 HETATM 13 C C8 FMN . . . C 3 -34.647 -22.628 -2.917 1 11.47 ? C8 FMN 402 A 1 HETATM 14 C C8M FMN . . . C 3 -33.79 -22.645 -1.678 1 12.68 ? C8M FMN 402 A 1 HETATM 15 C C9 FMN . . . C 3 -34.18 -23.202 -4.093 1 11.05 ? C9 FMN 402 A 1 HETATM 16 C C9A FMN . . . C 3 -34.972 -23.186 -5.235 1 11.06 ? C9A FMN 402 A 1 HETATM 17 N N10 FMN . . . C 3 -34.505 -23.765 -6.431 1 10.65 ? N10 FMN 402 A 1 HETATM 18 C C10 FMN . . . C 3 -35.34 -23.726 -7.563 1 11.65 ? C10 FMN 402 A 1 HETATM 19 C C1' FMN . . . C 3 -33.184 -24.393 -6.495 1 10.97 ? C1' FMN 402 A 1 HETATM 20 C C2' FMN . . . C 3 -32.119 -23.319 -6.681 1 11.22 ? C2' FMN 402 A 1 HETATM 21 O O2' FMN . . . C 3 -32.309 -22.672 -7.944 1 10.77 ? O2' FMN 402 A 1 HETATM 22 C C3' FMN . . . C 3 -30.72 -23.921 -6.624 1 10.04 ? C3' FMN 402 A 1 HETATM 23 O O3' FMN . . . C 3 -30.566 -24.872 -7.683 1 10.68 ? O3' FMN 402 A 1 HETATM 24 C C4' FMN . . . C 3 -30.475 -24.608 -5.285 1 10 ? C4' FMN 402 A 1 HETATM 25 O O4' FMN . . . C 3 -31.036 -23.816 -4.233 1 11.07 ? O4' FMN 402 A 1 HETATM 26 C C5' FMN . . . C 3 -28.984 -24.802 -5.036 1 9.56 ? C5' FMN 402 A 1 HETATM 27 O O5' FMN . . . C 3 -28.34 -23.531 -4.992 1 9.7 ? O5' FMN 402 A 1 HETATM 28 P P FMN . . . C 3 -27.969 -22.851 -3.581 1 11.07 ? P FMN 402 A 1 HETATM 29 O O1P FMN . . . C 3 -27.338 -23.972 -2.79 1 11.28 ? O1P FMN 402 A 1 HETATM 30 O O2P FMN . . . C 3 -27.019 -21.738 -3.951 1 10.82 ? O2P FMN 402 A 1 HETATM 31 O O3P FMN . . . C 3 -29.3 -22.381 -3.043 1 11.69 ? O3P FMN 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #