data_5HQE # _model_server_result.job_id zn0p--9V-FVf8lWonYPu4Q _model_server_result.datetime_utc '2024-11-08 18:53:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5HQE # _exptl.entry_id 5HQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HQE _cell.length_a 90.624 _cell.length_b 90.624 _cell.length_c 123.02 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 318 n y N1 C6 ORO sing 319 n y N1 HN1 ORO sing 320 n n C2 O2 ORO doub 321 n n C2 N3 ORO sing 322 n y N3 C4 ORO sing 323 n y N3 HN3 ORO sing 324 n n C4 O4 ORO doub 325 n n C4 C5 ORO sing 326 n y C5 C6 ORO doub 327 n y C5 H5 ORO sing 328 n n C6 C7 ORO sing 329 n n C7 O71 ORO doub 330 n n C7 O72 ORO sing 331 n n O72 HO7 ORO sing 332 n n # _atom_sites.entry_id 5HQE _atom_sites.fract_transf_matrix[1][1] 0.011035 _atom_sites.fract_transf_matrix[1][2] 0.006371 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 64B A 1 401 1 64B 18T . C 3 FMN A 1 402 1 FMN FMN . D 4 ORO A 1 403 1 ORO ORO . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 5 SO4 A 1 406 3 SO4 SO4 . H 6 ACT A 1 407 1 ACT ACT . I 6 ACT A 1 408 2 ACT ACT . J 6 ACT A 1 409 3 ACT ACT . K 7 HOH A 1 501 177 HOH HOH . K 7 HOH A 2 502 151 HOH HOH . K 7 HOH A 3 503 152 HOH HOH . K 7 HOH A 4 504 22 HOH HOH . K 7 HOH A 5 505 128 HOH HOH . K 7 HOH A 6 506 141 HOH HOH . K 7 HOH A 7 507 106 HOH HOH . K 7 HOH A 8 508 170 HOH HOH . K 7 HOH A 9 509 92 HOH HOH . K 7 HOH A 10 510 59 HOH HOH . K 7 HOH A 11 511 33 HOH HOH . K 7 HOH A 12 512 18 HOH HOH . K 7 HOH A 13 513 163 HOH HOH . K 7 HOH A 14 514 3 HOH HOH . K 7 HOH A 15 515 129 HOH HOH . K 7 HOH A 16 516 48 HOH HOH . K 7 HOH A 17 517 103 HOH HOH . K 7 HOH A 18 518 8 HOH HOH . K 7 HOH A 19 519 71 HOH HOH . K 7 HOH A 20 520 104 HOH HOH . K 7 HOH A 21 521 75 HOH HOH . K 7 HOH A 22 522 127 HOH HOH . K 7 HOH A 23 523 150 HOH HOH . K 7 HOH A 24 524 118 HOH HOH . K 7 HOH A 25 525 142 HOH HOH . K 7 HOH A 26 526 45 HOH HOH . K 7 HOH A 27 527 30 HOH HOH . K 7 HOH A 28 528 246 HOH HOH . K 7 HOH A 29 529 35 HOH HOH . K 7 HOH A 30 530 74 HOH HOH . K 7 HOH A 31 531 130 HOH HOH . K 7 HOH A 32 532 24 HOH HOH . K 7 HOH A 33 533 13 HOH HOH . K 7 HOH A 34 534 43 HOH HOH . K 7 HOH A 35 535 101 HOH HOH . K 7 HOH A 36 536 53 HOH HOH . K 7 HOH A 37 537 254 HOH HOH . K 7 HOH A 38 538 244 HOH HOH . K 7 HOH A 39 539 25 HOH HOH . K 7 HOH A 40 540 38 HOH HOH . K 7 HOH A 41 541 86 HOH HOH . K 7 HOH A 42 542 79 HOH HOH . K 7 HOH A 43 543 58 HOH HOH . K 7 HOH A 44 544 100 HOH HOH . K 7 HOH A 45 545 242 HOH HOH . K 7 HOH A 46 546 10 HOH HOH . K 7 HOH A 47 547 80 HOH HOH . K 7 HOH A 48 548 61 HOH HOH . K 7 HOH A 49 549 57 HOH HOH . K 7 HOH A 50 550 143 HOH HOH . K 7 HOH A 51 551 73 HOH HOH . K 7 HOH A 52 552 28 HOH HOH . K 7 HOH A 53 553 63 HOH HOH . K 7 HOH A 54 554 19 HOH HOH . K 7 HOH A 55 555 83 HOH HOH . K 7 HOH A 56 556 81 HOH HOH . K 7 HOH A 57 557 55 HOH HOH . K 7 HOH A 58 558 162 HOH HOH . K 7 HOH A 59 559 157 HOH HOH . K 7 HOH A 60 560 137 HOH HOH . K 7 HOH A 61 561 67 HOH HOH . K 7 HOH A 62 562 17 HOH HOH . K 7 HOH A 63 563 70 HOH HOH . K 7 HOH A 64 564 72 HOH HOH . K 7 HOH A 65 565 40 HOH HOH . K 7 HOH A 66 566 64 HOH HOH . K 7 HOH A 67 567 47 HOH HOH . K 7 HOH A 68 568 69 HOH HOH . K 7 HOH A 69 569 4 HOH HOH . K 7 HOH A 70 570 123 HOH HOH . K 7 HOH A 71 571 179 HOH HOH . K 7 HOH A 72 572 94 HOH HOH . K 7 HOH A 73 573 125 HOH HOH . K 7 HOH A 74 574 112 HOH HOH . K 7 HOH A 75 575 140 HOH HOH . K 7 HOH A 76 576 36 HOH HOH . K 7 HOH A 77 577 54 HOH HOH . K 7 HOH A 78 578 133 HOH HOH . K 7 HOH A 79 579 32 HOH HOH . K 7 HOH A 80 580 26 HOH HOH . K 7 HOH A 81 581 49 HOH HOH . K 7 HOH A 82 582 20 HOH HOH . K 7 HOH A 83 583 82 HOH HOH . K 7 HOH A 84 584 46 HOH HOH . K 7 HOH A 85 585 14 HOH HOH . K 7 HOH A 86 586 11 HOH HOH . K 7 HOH A 87 587 66 HOH HOH . K 7 HOH A 88 588 62 HOH HOH . K 7 HOH A 89 589 78 HOH HOH . K 7 HOH A 90 590 7 HOH HOH . K 7 HOH A 91 591 52 HOH HOH . K 7 HOH A 92 592 109 HOH HOH . K 7 HOH A 93 593 132 HOH HOH . K 7 HOH A 94 594 108 HOH HOH . K 7 HOH A 95 595 122 HOH HOH . K 7 HOH A 96 596 156 HOH HOH . K 7 HOH A 97 597 149 HOH HOH . K 7 HOH A 98 598 34 HOH HOH . K 7 HOH A 99 599 255 HOH HOH . K 7 HOH A 100 600 15 HOH HOH . K 7 HOH A 101 601 6 HOH HOH . K 7 HOH A 102 602 116 HOH HOH . K 7 HOH A 103 603 9 HOH HOH . K 7 HOH A 104 604 165 HOH HOH . K 7 HOH A 105 605 191 HOH HOH . K 7 HOH A 106 606 243 HOH HOH . K 7 HOH A 107 607 136 HOH HOH . K 7 HOH A 108 608 84 HOH HOH . K 7 HOH A 109 609 253 HOH HOH . K 7 HOH A 110 610 1 HOH HOH . K 7 HOH A 111 611 93 HOH HOH . K 7 HOH A 112 612 65 HOH HOH . K 7 HOH A 113 613 44 HOH HOH . K 7 HOH A 114 614 60 HOH HOH . K 7 HOH A 115 615 76 HOH HOH . K 7 HOH A 116 616 102 HOH HOH . K 7 HOH A 117 617 16 HOH HOH . K 7 HOH A 118 618 56 HOH HOH . K 7 HOH A 119 619 12 HOH HOH . K 7 HOH A 120 620 31 HOH HOH . K 7 HOH A 121 621 126 HOH HOH . K 7 HOH A 122 622 50 HOH HOH . K 7 HOH A 123 623 42 HOH HOH . K 7 HOH A 124 624 27 HOH HOH . K 7 HOH A 125 625 51 HOH HOH . K 7 HOH A 126 626 154 HOH HOH . K 7 HOH A 127 627 2 HOH HOH . K 7 HOH A 128 628 29 HOH HOH . K 7 HOH A 129 629 155 HOH HOH . K 7 HOH A 130 630 119 HOH HOH . K 7 HOH A 131 631 41 HOH HOH . K 7 HOH A 132 632 88 HOH HOH . K 7 HOH A 133 633 77 HOH HOH . K 7 HOH A 134 634 68 HOH HOH . K 7 HOH A 135 635 120 HOH HOH . K 7 HOH A 136 636 107 HOH HOH . K 7 HOH A 137 637 114 HOH HOH . K 7 HOH A 138 638 245 HOH HOH . K 7 HOH A 139 639 99 HOH HOH . K 7 HOH A 140 640 256 HOH HOH . K 7 HOH A 141 641 250 HOH HOH . K 7 HOH A 142 642 98 HOH HOH . K 7 HOH A 143 643 110 HOH HOH . K 7 HOH A 144 644 37 HOH HOH . K 7 HOH A 145 645 159 HOH HOH . K 7 HOH A 146 646 5 HOH HOH . K 7 HOH A 147 647 240 HOH HOH . K 7 HOH A 148 648 96 HOH HOH . K 7 HOH A 149 649 249 HOH HOH . K 7 HOH A 150 650 236 HOH HOH . K 7 HOH A 151 651 39 HOH HOH . K 7 HOH A 152 652 238 HOH HOH . K 7 HOH A 153 653 252 HOH HOH . K 7 HOH A 154 654 235 HOH HOH . K 7 HOH A 155 655 111 HOH HOH . K 7 HOH A 156 656 138 HOH HOH . K 7 HOH A 157 657 148 HOH HOH . K 7 HOH A 158 658 90 HOH HOH . K 7 HOH A 159 659 135 HOH HOH . K 7 HOH A 160 660 146 HOH HOH . K 7 HOH A 161 661 139 HOH HOH . K 7 HOH A 162 662 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 -37.951 -26.012 -4.951 1 11.49 ? N1 ORO 403 A 1 HETATM 2 C C2 ORO . . . D 4 -36.759 -26.442 -5.294 1 13.72 ? C2 ORO 403 A 1 HETATM 3 O O2 ORO . . . D 4 -35.914 -26.641 -4.467 1 12.35 ? O2 ORO 403 A 1 HETATM 4 N N3 ORO . . . D 4 -36.499 -26.614 -6.589 1 11.64 ? N3 ORO 403 A 1 HETATM 5 C C4 ORO . . . D 4 -37.393 -26.411 -7.534 1 11.62 ? C4 ORO 403 A 1 HETATM 6 O O4 ORO . . . D 4 -37.099 -26.599 -8.697 1 12.18 ? O4 ORO 403 A 1 HETATM 7 C C5 ORO . . . D 4 -38.67 -25.999 -7.167 1 11.35 ? C5 ORO 403 A 1 HETATM 8 C C6 ORO . . . D 4 -38.887 -25.743 -5.849 1 12.73 ? C6 ORO 403 A 1 HETATM 9 C C7 ORO . . . D 4 -40.271 -25.405 -5.421 1 14.86 ? C7 ORO 403 A 1 HETATM 10 O O71 ORO . . . D 4 -40.955 -24.602 -5.982 1 15.28 ? O71 ORO 403 A 1 HETATM 11 O O72 ORO . . . D 4 -40.633 -26.109 -4.512 1 15.62 ? O72 ORO 403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #