data_5HQN # _model_server_result.job_id TS2OGqOO7BeZt5krM3wBSg _model_server_result.datetime_utc '2024-11-05 00:55:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":702}' # _entry.id 5HQN # _exptl.entry_id 5HQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.67 _cell.angle_gamma 90 _cell.entry_id 5HQN _cell.length_a 124.844 _cell.length_b 127.297 _cell.length_c 102.523 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I,J,K,P 1 1 B,F,G,H,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG D 2 NAG 2 n C NAG 2 C 2 NAG D 8 NAG 3 n D NAG 1 D 1 NAG D 4 NAG 3 n D NAG 2 D 2 NAG D 10 NAG 3 n D FUC 3 D 3 FUC E 2 FUC 2 n E NAG 1 E 1 NAG D 6 NAG 2 n E NAG 2 E 2 NAG D 12 NAG 3 n F NAG 1 F 1 NAG D 3 NAG 3 n F NAG 2 F 2 NAG D 9 NAG 3 n F FUC 3 F 3 FUC E 1 FUC 3 n G NAG 1 G 1 NAG D 5 NAG 3 n G NAG 2 G 2 NAG D 11 NAG 3 n G FUC 3 G 3 FUC E 3 FUC 2 n H NAG 1 H 1 NAG D 7 NAG 2 n H NAG 2 H 2 NAG D 13 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 219 1_555 A SG CYS 70 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 71 A CYS 225 1_555 A SG CYS 94 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 229 A CYS 383 1_555 A SG CYS 275 A CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 428 A CYS 582 1_555 A SG CYS 432 A CYS 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 438 A CYS 592 1_555 A SG CYS 451 A CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 65 B CYS 219 1_555 B SG CYS 70 B CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 B SG CYS 71 B CYS 225 1_555 B SG CYS 94 B CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 229 B CYS 383 1_555 B SG CYS 275 B CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 428 B CYS 582 1_555 B SG CYS 432 B CYS 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 438 B CYS 592 1_555 B SG CYS 451 B CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 179 A ASN 333 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 239 A ASN 393 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale3 A ND2 ASN 364 A ASN 518 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 B ND2 ASN 19 B ASN 173 1_555 N C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale5 B ND2 ASN 179 B ASN 333 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 B ND2 ASN 239 B ASN 393 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale7 B ND2 ASN 364 B ASN 518 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale15 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A OD1 ASP 50 A ASP 204 1_555 I ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 A NE2 HIS 52 A HIS 206 1_555 I ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc3 A OD2 ASP 122 A ASP 276 1_555 I ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A OD2 ASP 122 A ASP 276 1_555 J ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 A OD1 ASN 162 A ASN 316 1_555 J ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc6 A NE2 HIS 269 A HIS 423 1_555 J ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc7 A ND1 HIS 301 A HIS 455 1_555 J ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc8 A NE2 HIS 303 A HIS 457 1_555 I ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc9 I ZN ZN . A ZN 701 1_555 K O1 PO4 . A PO4 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 I ZN ZN . A ZN 701 1_555 P O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc11 J ZN ZN . A ZN 702 1_555 K O3 PO4 . A PO4 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc12 J ZN ZN . A ZN 702 1_555 P O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc13 B OD1 ASP 50 B ASP 204 1_555 L ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc14 B NE2 HIS 52 B HIS 206 1_555 L ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc15 B OD2 ASP 122 B ASP 276 1_555 L ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc16 B OD2 ASP 122 B ASP 276 1_555 M ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc17 B OD1 ASN 162 B ASN 316 1_555 M ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc18 B NE2 HIS 269 B HIS 423 1_555 M ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc19 B ND1 HIS 301 B HIS 455 1_555 M ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc20 B NE2 HIS 303 B HIS 457 1_555 L ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc21 L ZN ZN . B ZN 701 1_555 O O3 PO4 . B PO4 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc22 L ZN ZN . B ZN 701 1_555 Q O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc23 M ZN ZN . B ZN 702 1_555 O O2 PO4 . B PO4 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc24 M ZN ZN . B ZN 702 1_555 Q O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HQN _atom_sites.fract_transf_matrix[1][1] 0.00801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004942 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 ZN A 1 701 1 ZN ZN . J 4 ZN A 1 702 2 ZN ZN . K 5 PO4 A 1 710 1 PO4 PO4 . L 4 ZN B 1 701 3 ZN ZN . M 4 ZN B 1 702 4 ZN ZN . N 6 NAG B 1 703 1 NAG NAG . O 5 PO4 B 1 712 2 PO4 PO4 . P 7 HOH A 1 801 1 HOH HOH . P 7 HOH A 2 802 28 HOH HOH . P 7 HOH A 3 803 34 HOH HOH . P 7 HOH A 4 804 11 HOH HOH . P 7 HOH A 5 805 72 HOH HOH . P 7 HOH A 6 806 19 HOH HOH . P 7 HOH A 7 807 7 HOH HOH . P 7 HOH A 8 808 27 HOH HOH . P 7 HOH A 9 809 36 HOH HOH . P 7 HOH A 10 810 24 HOH HOH . P 7 HOH A 11 811 30 HOH HOH . P 7 HOH A 12 812 8 HOH HOH . P 7 HOH A 13 813 26 HOH HOH . P 7 HOH A 14 814 5 HOH HOH . P 7 HOH A 15 815 14 HOH HOH . P 7 HOH A 16 816 32 HOH HOH . P 7 HOH A 17 817 33 HOH HOH . P 7 HOH A 18 818 39 HOH HOH . P 7 HOH A 19 819 38 HOH HOH . P 7 HOH A 20 820 62 HOH HOH . P 7 HOH A 21 821 29 HOH HOH . P 7 HOH A 22 822 20 HOH HOH . P 7 HOH A 23 823 60 HOH HOH . P 7 HOH A 24 824 17 HOH HOH . P 7 HOH A 25 825 74 HOH HOH . P 7 HOH A 26 826 31 HOH HOH . P 7 HOH A 27 827 35 HOH HOH . P 7 HOH A 28 828 13 HOH HOH . P 7 HOH A 29 829 73 HOH HOH . P 7 HOH A 30 830 37 HOH HOH . P 7 HOH A 31 831 16 HOH HOH . P 7 HOH A 32 832 4 HOH HOH . P 7 HOH A 33 833 12 HOH HOH . P 7 HOH A 34 834 64 HOH HOH . P 7 HOH A 35 835 63 HOH HOH . P 7 HOH A 36 836 25 HOH HOH . P 7 HOH A 37 837 68 HOH HOH . P 7 HOH A 38 838 71 HOH HOH . P 7 HOH A 39 839 65 HOH HOH . Q 7 HOH B 1 801 2 HOH HOH . Q 7 HOH B 2 802 47 HOH HOH . Q 7 HOH B 3 803 69 HOH HOH . Q 7 HOH B 4 804 23 HOH HOH . Q 7 HOH B 5 805 52 HOH HOH . Q 7 HOH B 6 806 43 HOH HOH . Q 7 HOH B 7 807 56 HOH HOH . Q 7 HOH B 8 808 15 HOH HOH . Q 7 HOH B 9 809 58 HOH HOH . Q 7 HOH B 10 810 59 HOH HOH . Q 7 HOH B 11 811 70 HOH HOH . Q 7 HOH B 12 812 44 HOH HOH . Q 7 HOH B 13 813 51 HOH HOH . Q 7 HOH B 14 814 18 HOH HOH . Q 7 HOH B 15 815 9 HOH HOH . Q 7 HOH B 16 816 50 HOH HOH . Q 7 HOH B 17 817 55 HOH HOH . Q 7 HOH B 18 818 3 HOH HOH . Q 7 HOH B 19 819 45 HOH HOH . Q 7 HOH B 20 820 21 HOH HOH . Q 7 HOH B 21 821 41 HOH HOH . Q 7 HOH B 22 822 61 HOH HOH . Q 7 HOH B 23 823 48 HOH HOH . Q 7 HOH B 24 824 22 HOH HOH . Q 7 HOH B 25 825 49 HOH HOH . Q 7 HOH B 26 826 42 HOH HOH . Q 7 HOH B 27 827 10 HOH HOH . Q 7 HOH B 28 828 46 HOH HOH . Q 7 HOH B 29 829 66 HOH HOH . Q 7 HOH B 30 830 6 HOH HOH . Q 7 HOH B 31 831 57 HOH HOH . Q 7 HOH B 32 832 53 HOH HOH . Q 7 HOH B 33 833 40 HOH HOH . Q 7 HOH B 34 834 54 HOH HOH . Q 7 HOH B 35 835 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 63.18 _atom_site.Cartn_y 28.121 _atom_site.Cartn_z 154.26 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 702 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #