data_5HQO # _model_server_result.job_id lTIVoh2880nWZDY9dw9aiQ _model_server_result.datetime_utc '2025-09-08 23:45:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":213}' # _entry.id 5HQO # _exptl.entry_id 5HQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HQO _cell.length_a 180.877 _cell.length_b 180.877 _cell.length_c 180.877 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 45 A GLU 45 1_555 D PD PLL . A PLL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 A SG CYS 48 A CYS 48 1_555 D PD PLL . A PLL 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A NE2 HIS 49 A HIS 49 1_555 J IR IR . A IR 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 A OD1 ASP 80 A ASP 80 1_555 K CD CD . A CD 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 A OD1 ASP 80 A ASP 80 1_555 K CD CD . A CD 210 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 A NE2 HIS 114 A HIS 114 1_555 B PD PD . A PD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5HQO _atom_sites.fract_transf_matrix[1][1] 0.005529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PD A 1 201 1 PD PD . C 2 PD A 1 202 2 PD PD . D 3 PLL A 1 203 3 PLL PLL . E 4 IR A 1 204 1 IR IR . F 4 IR A 1 205 2 IR IR . G 4 IR A 1 206 3 IR IR . H 4 IR A 1 207 4 IR IR . I 4 IR A 1 208 5 IR IR . J 4 IR A 1 209 6 IR IR . K 5 CD A 1 210 1 CD CD . L 6 SO4 A 1 211 1 SO4 SO4 . M 7 EDO A 1 212 1 EDO EDO . N 7 EDO A 1 213 2 EDO EDO . O 8 HOH A 1 301 98 HOH HOH . O 8 HOH A 2 302 94 HOH HOH . O 8 HOH A 3 303 85 HOH HOH . O 8 HOH A 4 304 35 HOH HOH . O 8 HOH A 5 305 51 HOH HOH . O 8 HOH A 6 306 19 HOH HOH . O 8 HOH A 7 307 61 HOH HOH . O 8 HOH A 8 308 38 HOH HOH . O 8 HOH A 9 309 91 HOH HOH . O 8 HOH A 10 310 70 HOH HOH . O 8 HOH A 11 311 24 HOH HOH . O 8 HOH A 12 312 102 HOH HOH . O 8 HOH A 13 313 78 HOH HOH . O 8 HOH A 14 314 2 HOH HOH . O 8 HOH A 15 315 33 HOH HOH . O 8 HOH A 16 316 32 HOH HOH . O 8 HOH A 17 317 7 HOH HOH . O 8 HOH A 18 318 69 HOH HOH . O 8 HOH A 19 319 67 HOH HOH . O 8 HOH A 20 320 79 HOH HOH . O 8 HOH A 21 321 54 HOH HOH . O 8 HOH A 22 322 16 HOH HOH . O 8 HOH A 23 323 6 HOH HOH . O 8 HOH A 24 324 96 HOH HOH . O 8 HOH A 25 325 42 HOH HOH . O 8 HOH A 26 326 81 HOH HOH . O 8 HOH A 27 327 3 HOH HOH . O 8 HOH A 28 328 23 HOH HOH . O 8 HOH A 29 329 10 HOH HOH . O 8 HOH A 30 330 37 HOH HOH . O 8 HOH A 31 331 5 HOH HOH . O 8 HOH A 32 332 83 HOH HOH . O 8 HOH A 33 333 77 HOH HOH . O 8 HOH A 34 334 49 HOH HOH . O 8 HOH A 35 335 63 HOH HOH . O 8 HOH A 36 336 55 HOH HOH . O 8 HOH A 37 337 88 HOH HOH . O 8 HOH A 38 338 44 HOH HOH . O 8 HOH A 39 339 99 HOH HOH . O 8 HOH A 40 340 1 HOH HOH . O 8 HOH A 41 341 15 HOH HOH . O 8 HOH A 42 342 26 HOH HOH . O 8 HOH A 43 343 45 HOH HOH . O 8 HOH A 44 344 97 HOH HOH . O 8 HOH A 45 345 30 HOH HOH . O 8 HOH A 46 346 86 HOH HOH . O 8 HOH A 47 347 25 HOH HOH . O 8 HOH A 48 348 4 HOH HOH . O 8 HOH A 49 349 8 HOH HOH . O 8 HOH A 50 350 73 HOH HOH . O 8 HOH A 51 351 11 HOH HOH . O 8 HOH A 52 352 90 HOH HOH . O 8 HOH A 53 353 28 HOH HOH . O 8 HOH A 54 354 48 HOH HOH . O 8 HOH A 55 355 60 HOH HOH . O 8 HOH A 56 356 75 HOH HOH . O 8 HOH A 57 357 17 HOH HOH . O 8 HOH A 58 358 18 HOH HOH . O 8 HOH A 59 359 52 HOH HOH . O 8 HOH A 60 360 21 HOH HOH . O 8 HOH A 61 361 9 HOH HOH . O 8 HOH A 62 362 12 HOH HOH . O 8 HOH A 63 363 71 HOH HOH . O 8 HOH A 64 364 40 HOH HOH . O 8 HOH A 65 365 53 HOH HOH . O 8 HOH A 66 366 13 HOH HOH . O 8 HOH A 67 367 31 HOH HOH . O 8 HOH A 68 368 22 HOH HOH . O 8 HOH A 69 369 34 HOH HOH . O 8 HOH A 70 370 46 HOH HOH . O 8 HOH A 71 371 62 HOH HOH . O 8 HOH A 72 372 14 HOH HOH . O 8 HOH A 73 373 95 HOH HOH . O 8 HOH A 74 374 82 HOH HOH . O 8 HOH A 75 375 36 HOH HOH . O 8 HOH A 76 376 68 HOH HOH . O 8 HOH A 77 377 101 HOH HOH . O 8 HOH A 78 378 74 HOH HOH . O 8 HOH A 79 379 92 HOH HOH . O 8 HOH A 80 380 84 HOH HOH . O 8 HOH A 81 381 56 HOH HOH . O 8 HOH A 82 382 93 HOH HOH . O 8 HOH A 83 383 47 HOH HOH . O 8 HOH A 84 384 27 HOH HOH . O 8 HOH A 85 385 65 HOH HOH . O 8 HOH A 86 386 72 HOH HOH . O 8 HOH A 87 387 87 HOH HOH . O 8 HOH A 88 388 39 HOH HOH . O 8 HOH A 89 389 89 HOH HOH . O 8 HOH A 90 390 29 HOH HOH . O 8 HOH A 91 391 57 HOH HOH . O 8 HOH A 92 392 50 HOH HOH . O 8 HOH A 93 393 41 HOH HOH . O 8 HOH A 94 394 58 HOH HOH . O 8 HOH A 95 395 59 HOH HOH . O 8 HOH A 96 396 80 HOH HOH . O 8 HOH A 97 397 66 HOH HOH . O 8 HOH A 98 398 64 HOH HOH . O 8 HOH A 99 399 76 HOH HOH . O 8 HOH A 100 400 20 HOH HOH . O 8 HOH A 101 401 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 7 33.594 16.624 48.465 1 42.94 ? C1 EDO 213 A 1 HETATM 2 O O1 EDO . . . N 7 33.823 15.551 49.43 1 47.19 ? O1 EDO 213 A 1 HETATM 3 C C2 EDO . . . N 7 32.392 17.487 48.85 1 49.8 ? C2 EDO 213 A 1 HETATM 4 O O2 EDO . . . N 7 31.104 16.875 48.516 1 42.36 ? O2 EDO 213 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #