data_5HQY
#
_model_server_result.job_id            74bOZIkiNsCHAcXxgpZiLQ 
_model_server_result.datetime_utc      '2024-11-21 17:59:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hqy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5HQY 
#
_exptl.entry_id    5HQY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              342.363 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methyl-6-[(2,3,4-trifluorophenyl)sulfanyl]thieno[2,3-d]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HQY 
_cell.length_a            86.516 
_cell.length_b            86.516 
_cell.length_c            76.647 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HQY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C4 63Y . A 63Y 202 1_555 D N3 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.204 ? 
covale ? covale2 C C4 63Y . A 63Y 202 1_555 D C5 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.625 ? 
covale ? covale3 C C4 63Y . A 63Y 202 1_555 D SAL 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? 
covale ? covale4 C C5 63Y . A 63Y 202 1_555 D C4 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? 
covale ? covale5 C C5 63Y . A 63Y 202 1_555 D C6 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
covale ? covale6 C C6 63Y . A 63Y 202 1_555 D C5 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? 
covale ? covale7 C N1 63Y . A 63Y 202 1_555 D C6 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? 
covale ? covale8 C N3 63Y . A 63Y 202 1_555 D C2 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale9 C N3 63Y . A 63Y 202 1_555 D C4 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale10 C FAF 63Y . A 63Y 202 1_555 D CAG 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? 
covale ? covale11 C CAS 63Y . A 63Y 202 1_555 D CAH 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale12 C CAS 63Y . A 63Y 202 1_555 D SAK 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? 
covale ? covale13 C CAQ 63Y . A 63Y 202 1_555 D CAQ 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale14 C CAT 63Y . A 63Y 202 1_555 D CAT 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.133 ? 
covale ? covale15 C CAT 63Y . A 63Y 202 1_555 D SAL 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
covale ? covale16 C CAT 63Y . A 63Y 202 1_555 D CAP 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? 
covale ? covale17 C SAL 63Y . A 63Y 202 1_555 D C4 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
covale ? covale18 C SAL 63Y . A 63Y 202 1_555 D CAT 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
covale ? covale19 C C2 63Y . A 63Y 202 1_555 D N3 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale20 C C2 63Y . A 63Y 202 1_555 D N1 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? 
covale ? covale21 C NAB 63Y . A 63Y 202 1_555 D C2 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? 
covale ? covale22 C CAP 63Y . A 63Y 202 1_555 D C5 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale23 C CAA 63Y . A 63Y 202 1_555 D CAA 63Y . A 63Y 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
#
_chem_comp.formula           'C13 H9 F3 N4 S2' 
_chem_comp.formula_weight    342.363 
_chem_comp.id                63Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methyl-6-[(2,3,4-trifluorophenyl)sulfanyl]thieno[2,3-d]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAB C2 63Y sing 1 n n 
C2 N3 63Y doub 2 n y 
C2 N1 63Y sing 3 n y 
N3 C4 63Y sing 4 n y 
N1 C6 63Y doub 5 n y 
C4 SAL 63Y sing 6 n y 
C4 C5 63Y doub 7 n y 
SAL CAT 63Y sing 8 n y 
C6 C5 63Y sing 9 n y 
C6 NAC 63Y sing 10 n n 
C5 CAP 63Y sing 11 n y 
CAT CAP 63Y doub 12 n y 
CAT SAK 63Y sing 13 n n 
CAP CAA 63Y sing 14 n n 
SAK CAQ 63Y sing 15 n n 
CAQ CAH 63Y doub 16 n y 
CAQ CAS 63Y sing 17 n y 
CAH CAG 63Y sing 18 n y 
CAG CAN 63Y doub 19 n y 
FAF CAS 63Y sing 20 n n 
CAS CAR 63Y doub 21 n y 
CAN CAR 63Y sing 22 n y 
CAN FAD 63Y sing 23 n n 
CAR FAE 63Y sing 24 n n 
CAG H1 63Y sing 25 n n 
CAH H2 63Y sing 26 n n 
NAB H3 63Y sing 27 n n 
NAB H4 63Y sing 28 n n 
NAC H5 63Y sing 29 n n 
NAC H6 63Y sing 30 n n 
CAA H7 63Y sing 31 n n 
CAA H8 63Y sing 32 n n 
CAA H9 63Y sing 33 n n 
#
_atom_sites.entry_id                     5HQY 
_atom_sites.fract_transf_matrix[1][1]    0.011559 
_atom_sites.fract_transf_matrix[1][2]    0.006673 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013347 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013047 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 201 1 NDP NDP . 
C 3 63Y A 1 202 1 63Y DRG . 
D 3 63Y A 1 203 1 63Y DRG . 
E 4 HOH A 1 301 72 HOH HOH . 
E 4 HOH A 2 302 52 HOH HOH . 
E 4 HOH A 3 303 63 HOH HOH . 
E 4 HOH A 4 304 78 HOH HOH . 
E 4 HOH A 5 305 84 HOH HOH . 
E 4 HOH A 6 306 88 HOH HOH . 
E 4 HOH A 7 307 59 HOH HOH . 
E 4 HOH A 8 308 45 HOH HOH . 
E 4 HOH A 9 309 10 HOH HOH . 
E 4 HOH A 10 310 43 HOH HOH . 
E 4 HOH A 11 311 90 HOH HOH . 
E 4 HOH A 12 312 55 HOH HOH . 
E 4 HOH A 13 313 86 HOH HOH . 
E 4 HOH A 14 314 77 HOH HOH . 
E 4 HOH A 15 315 21 HOH HOH . 
E 4 HOH A 16 316 30 HOH HOH . 
E 4 HOH A 17 317 85 HOH HOH . 
E 4 HOH A 18 318 40 HOH HOH . 
E 4 HOH A 19 319 47 HOH HOH . 
E 4 HOH A 20 320 54 HOH HOH . 
E 4 HOH A 21 321 42 HOH HOH . 
E 4 HOH A 22 322 65 HOH HOH . 
E 4 HOH A 23 323 74 HOH HOH . 
E 4 HOH A 24 324 6 HOH HOH . 
E 4 HOH A 25 325 92 HOH HOH . 
E 4 HOH A 26 326 11 HOH HOH . 
E 4 HOH A 27 327 33 HOH HOH . 
E 4 HOH A 28 328 4 HOH HOH . 
E 4 HOH A 29 329 64 HOH HOH . 
E 4 HOH A 30 330 27 HOH HOH . 
E 4 HOH A 31 331 19 HOH HOH . 
E 4 HOH A 32 332 62 HOH HOH . 
E 4 HOH A 33 333 76 HOH HOH . 
E 4 HOH A 34 334 81 HOH HOH . 
E 4 HOH A 35 335 83 HOH HOH . 
E 4 HOH A 36 336 5 HOH HOH . 
E 4 HOH A 37 337 57 HOH HOH . 
E 4 HOH A 38 338 3 HOH HOH . 
E 4 HOH A 39 339 48 HOH HOH . 
E 4 HOH A 40 340 25 HOH HOH . 
E 4 HOH A 41 341 41 HOH HOH . 
E 4 HOH A 42 342 93 HOH HOH . 
E 4 HOH A 43 343 82 HOH HOH . 
E 4 HOH A 44 344 16 HOH HOH . 
E 4 HOH A 45 345 87 HOH HOH . 
E 4 HOH A 46 346 2 HOH HOH . 
E 4 HOH A 47 347 28 HOH HOH . 
E 4 HOH A 48 348 8 HOH HOH . 
E 4 HOH A 49 349 1 HOH HOH . 
E 4 HOH A 50 350 39 HOH HOH . 
E 4 HOH A 51 351 49 HOH HOH . 
E 4 HOH A 52 352 18 HOH HOH . 
E 4 HOH A 53 353 73 HOH HOH . 
E 4 HOH A 54 354 35 HOH HOH . 
E 4 HOH A 55 355 9 HOH HOH . 
E 4 HOH A 56 356 17 HOH HOH . 
E 4 HOH A 57 357 13 HOH HOH . 
E 4 HOH A 58 358 7 HOH HOH . 
E 4 HOH A 59 359 14 HOH HOH . 
E 4 HOH A 60 360 24 HOH HOH . 
E 4 HOH A 61 361 12 HOH HOH . 
E 4 HOH A 62 362 29 HOH HOH . 
E 4 HOH A 63 363 26 HOH HOH . 
E 4 HOH A 64 364 66 HOH HOH . 
E 4 HOH A 65 365 38 HOH HOH . 
E 4 HOH A 66 366 53 HOH HOH . 
E 4 HOH A 67 367 75 HOH HOH . 
E 4 HOH A 68 368 58 HOH HOH . 
E 4 HOH A 69 369 44 HOH HOH . 
E 4 HOH A 70 370 46 HOH HOH . 
E 4 HOH A 71 371 22 HOH HOH . 
E 4 HOH A 72 372 23 HOH HOH . 
E 4 HOH A 73 373 51 HOH HOH . 
E 4 HOH A 74 374 79 HOH HOH . 
E 4 HOH A 75 375 36 HOH HOH . 
E 4 HOH A 76 376 61 HOH HOH . 
E 4 HOH A 77 377 68 HOH HOH . 
E 4 HOH A 78 378 69 HOH HOH . 
E 4 HOH A 79 379 89 HOH HOH . 
E 4 HOH A 80 380 15 HOH HOH . 
E 4 HOH A 81 381 31 HOH HOH . 
E 4 HOH A 82 382 56 HOH HOH . 
E 4 HOH A 83 383 70 HOH HOH . 
E 4 HOH A 84 384 60 HOH HOH . 
E 4 HOH A 85 385 91 HOH HOH . 
E 4 HOH A 86 386 32 HOH HOH . 
E 4 HOH A 87 387 80 HOH HOH . 
E 4 HOH A 88 388 37 HOH HOH . 
E 4 HOH A 89 389 71 HOH HOH . 
E 4 HOH A 90 390 20 HOH HOH . 
E 4 HOH A 91 391 50 HOH HOH . 
E 4 HOH A 92 392 67 HOH HOH . 
E 4 HOH A 93 393 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 63Y . . . C 3 -3.051 18.216 23.48 0.5 22.42 ? C4 63Y 202 A 1 
HETATM 2 C C5 63Y . . . C 3 -2.84 19.021 24.538 0.5 21.35 ? C5 63Y 202 A 1 
HETATM 3 C C6 63Y . . . C 3 -2.5 20.289 24.295 0.5 16.69 ? C6 63Y 202 A 1 
HETATM 4 N N1 63Y . . . C 3 -2.367 20.764 23.05 0.5 18.36 ? N1 63Y 202 A 1 
HETATM 5 N N3 63Y . . . C 3 -2.922 18.678 22.228 0.5 20.28 ? N3 63Y 202 A 1 
HETATM 6 F FAF 63Y . . . C 3 -3.582 13.05 27.248 0.5 37.03 ? FAF 63Y 202 A 1 
HETATM 7 C CAS 63Y . . . C 3 -2.366 13.599 26.978 0.5 38.2 ? CAS 63Y 202 A 1 
HETATM 8 C CAR 63Y . . . C 3 -1.243 12.785 26.879 0.5 40.2 ? CAR 63Y 202 A 1 
HETATM 9 F FAE 63Y . . . C 3 -1.36 11.44 27.051 0.5 47.72 ? FAE 63Y 202 A 1 
HETATM 10 C CAN 63Y . . . C 3 -0.001 13.345 26.604 0.5 39.85 ? CAN 63Y 202 A 1 
HETATM 11 F FAD 63Y . . . C 3 1.098 12.549 26.506 0.5 47.34 ? FAD 63Y 202 A 1 
HETATM 12 C CAG 63Y . . . C 3 0.118 14.719 26.428 0.5 39.44 ? CAG 63Y 202 A 1 
HETATM 13 C CAH 63Y . . . C 3 -1.005 15.532 26.527 0.5 34.19 ? CAH 63Y 202 A 1 
HETATM 14 C CAQ 63Y . . . C 3 -2.247 14.972 26.802 0.5 40.87 ? CAQ 63Y 202 A 1 
HETATM 15 S SAK 63Y . . . C 3 -3.66 15.996 26.927 0.5 43.46 ? SAK 63Y 202 A 1 
HETATM 16 C CAT 63Y . . . C 3 -3.361 17.092 25.596 0.5 29.44 ? CAT 63Y 202 A 1 
HETATM 17 S SAL 63Y . . . C 3 -3.454 16.718 24.046 0.5 34.11 ? SAL 63Y 202 A 1 
HETATM 18 C C2 63Y . . . C 3 -2.58 19.952 22.009 0.5 16.5 ? C2 63Y 202 A 1 
HETATM 19 N NAB 63Y . . . C 3 -2.453 20.409 20.766 0.5 16.58 ? NAB 63Y 202 A 1 
HETATM 20 N NAC 63Y . . . C 3 -2.295 21.072 25.35 0.5 19 ? NAC 63Y 202 A 1 
HETATM 21 C CAP 63Y . . . C 3 -3.019 18.374 25.711 0.5 26.39 ? CAP 63Y 202 A 1 
HETATM 22 C CAA 63Y . . . C 3 -2.847 19.037 27.081 0.5 29.46 ? CAA 63Y 202 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           22 
#