data_5HR2 # _model_server_result.job_id v8aC-FiMZE5rY2UeHZSIbQ _model_server_result.datetime_utc '2024-12-21 12:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 5HR2 # _exptl.entry_id 5HR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.95 _cell.angle_gamma 90 _cell.entry_id 5HR2 _cell.length_a 87.012 _cell.length_b 47.917 _cell.length_c 28.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 33 A CYS 32 1_555 A SG CYS 36 A CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc1 A N SER 2 A SER 1 1_555 B CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A N ASP 3 A ASP 2 1_555 B CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc3 A OD1 ASP 3 A ASP 2 1_555 B CU CU . A CU 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 A NE2 HIS 7 A HIS 6 1_555 C CU CU . A CU 501 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc5 A OD2 ASP 11 A ASP 10 1_555 B CU CU . A CU 500 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc6 A OD1 ASP 48 A ASP 47 1_555 C CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 A OE1 GLN 63 A GLN 62 1_555 C CU CU . A CU 501 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HR2 _atom_sites.fract_transf_matrix[1][1] 0.011493 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002433 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 500 500 CU CU . C 2 CU A 1 501 501 CU CU . D 3 HOH A 1 601 132 HOH HOH . D 3 HOH A 2 602 122 HOH HOH . D 3 HOH A 3 603 101 HOH HOH . D 3 HOH A 4 604 53 HOH HOH . D 3 HOH A 5 605 5 HOH HOH . D 3 HOH A 6 606 97 HOH HOH . D 3 HOH A 7 607 100 HOH HOH . D 3 HOH A 8 608 24 HOH HOH . D 3 HOH A 9 609 8 HOH HOH . D 3 HOH A 10 610 116 HOH HOH . D 3 HOH A 11 611 63 HOH HOH . D 3 HOH A 12 612 59 HOH HOH . D 3 HOH A 13 613 98 HOH HOH . D 3 HOH A 14 614 84 HOH HOH . D 3 HOH A 15 615 106 HOH HOH . D 3 HOH A 16 616 6 HOH HOH . D 3 HOH A 17 617 26 HOH HOH . D 3 HOH A 18 618 36 HOH HOH . D 3 HOH A 19 619 83 HOH HOH . D 3 HOH A 20 620 19 HOH HOH . D 3 HOH A 21 621 93 HOH HOH . D 3 HOH A 22 622 105 HOH HOH . D 3 HOH A 23 623 13 HOH HOH . D 3 HOH A 24 624 3 HOH HOH . D 3 HOH A 25 625 89 HOH HOH . D 3 HOH A 26 626 35 HOH HOH . D 3 HOH A 27 627 2 HOH HOH . D 3 HOH A 28 628 74 HOH HOH . D 3 HOH A 29 629 46 HOH HOH . D 3 HOH A 30 630 31 HOH HOH . D 3 HOH A 31 631 42 HOH HOH . D 3 HOH A 32 632 108 HOH HOH . D 3 HOH A 33 633 34 HOH HOH . D 3 HOH A 34 634 23 HOH HOH . D 3 HOH A 35 635 33 HOH HOH . D 3 HOH A 36 636 7 HOH HOH . D 3 HOH A 37 637 27 HOH HOH . D 3 HOH A 38 638 45 HOH HOH . D 3 HOH A 39 639 52 HOH HOH . D 3 HOH A 40 640 30 HOH HOH . D 3 HOH A 41 641 16 HOH HOH . D 3 HOH A 42 642 21 HOH HOH . D 3 HOH A 43 643 85 HOH HOH . D 3 HOH A 44 644 29 HOH HOH . D 3 HOH A 45 645 86 HOH HOH . D 3 HOH A 46 646 18 HOH HOH . D 3 HOH A 47 647 77 HOH HOH . D 3 HOH A 48 648 133 HOH HOH . D 3 HOH A 49 649 50 HOH HOH . D 3 HOH A 50 650 115 HOH HOH . D 3 HOH A 51 651 15 HOH HOH . D 3 HOH A 52 652 22 HOH HOH . D 3 HOH A 53 653 44 HOH HOH . D 3 HOH A 54 654 120 HOH HOH . D 3 HOH A 55 655 11 HOH HOH . D 3 HOH A 56 656 112 HOH HOH . D 3 HOH A 57 657 76 HOH HOH . D 3 HOH A 58 658 1 HOH HOH . D 3 HOH A 59 659 20 HOH HOH . D 3 HOH A 60 660 58 HOH HOH . D 3 HOH A 61 661 14 HOH HOH . D 3 HOH A 62 662 38 HOH HOH . D 3 HOH A 63 663 40 HOH HOH . D 3 HOH A 64 664 79 HOH HOH . D 3 HOH A 65 665 48 HOH HOH . D 3 HOH A 66 666 10 HOH HOH . D 3 HOH A 67 667 80 HOH HOH . D 3 HOH A 68 668 25 HOH HOH . D 3 HOH A 69 669 4 HOH HOH . D 3 HOH A 70 670 9 HOH HOH . D 3 HOH A 71 671 92 HOH HOH . D 3 HOH A 72 672 113 HOH HOH . D 3 HOH A 73 673 32 HOH HOH . D 3 HOH A 74 674 109 HOH HOH . D 3 HOH A 75 675 64 HOH HOH . D 3 HOH A 76 676 91 HOH HOH . D 3 HOH A 77 677 39 HOH HOH . D 3 HOH A 78 678 75 HOH HOH . D 3 HOH A 79 679 55 HOH HOH . D 3 HOH A 80 680 54 HOH HOH . D 3 HOH A 81 681 28 HOH HOH . D 3 HOH A 82 682 88 HOH HOH . D 3 HOH A 83 683 37 HOH HOH . D 3 HOH A 84 684 102 HOH HOH . D 3 HOH A 85 685 12 HOH HOH . D 3 HOH A 86 686 78 HOH HOH . D 3 HOH A 87 687 62 HOH HOH . D 3 HOH A 88 688 87 HOH HOH . D 3 HOH A 89 689 99 HOH HOH . D 3 HOH A 90 690 117 HOH HOH . D 3 HOH A 91 691 61 HOH HOH . D 3 HOH A 92 692 71 HOH HOH . D 3 HOH A 93 693 131 HOH HOH . D 3 HOH A 94 694 49 HOH HOH . D 3 HOH A 95 695 82 HOH HOH . D 3 HOH A 96 696 130 HOH HOH . D 3 HOH A 97 697 41 HOH HOH . D 3 HOH A 98 698 126 HOH HOH . D 3 HOH A 99 699 94 HOH HOH . D 3 HOH A 100 700 47 HOH HOH . D 3 HOH A 101 701 51 HOH HOH . D 3 HOH A 102 702 107 HOH HOH . D 3 HOH A 103 703 67 HOH HOH . D 3 HOH A 104 704 103 HOH HOH . D 3 HOH A 105 705 69 HOH HOH . D 3 HOH A 106 706 70 HOH HOH . D 3 HOH A 107 707 56 HOH HOH . D 3 HOH A 108 708 110 HOH HOH . D 3 HOH A 109 709 72 HOH HOH . D 3 HOH A 110 710 68 HOH HOH . D 3 HOH A 111 711 90 HOH HOH . D 3 HOH A 112 712 129 HOH HOH . D 3 HOH A 113 713 96 HOH HOH . D 3 HOH A 114 714 65 HOH HOH . D 3 HOH A 115 715 66 HOH HOH . D 3 HOH A 116 716 17 HOH HOH . D 3 HOH A 117 717 57 HOH HOH . D 3 HOH A 118 718 43 HOH HOH . D 3 HOH A 119 719 111 HOH HOH . D 3 HOH A 120 720 104 HOH HOH . D 3 HOH A 121 721 118 HOH HOH . D 3 HOH A 122 722 81 HOH HOH . D 3 HOH A 123 723 73 HOH HOH . D 3 HOH A 124 724 60 HOH HOH . D 3 HOH A 125 725 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -28.635 _atom_site.Cartn_y 18.153 _atom_site.Cartn_z 13.008 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #