data_5HRB # _model_server_result.job_id xeweAk8xoOawmPEP_csdBQ _model_server_result.datetime_utc '2024-11-09 02:11:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 5HRB # _exptl.entry_id 5HRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HRB _cell.length_a 77.77 _cell.length_b 77.77 _cell.length_c 43.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 81 1_555 A SG CYS 90 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc1 A OD1 ASP 53 A ASP 49 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc2 A OD2 ASP 53 A ASP 49 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc3 A OD1 ASP 55 A ASP 51 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc4 A OD1 ASP 104 A ASP 100 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 D MN MN . A MN 201 1_555 B OP1 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 D DG 3 1_555 C N3 DC 8 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 D DG 3 1_555 C O2 DC 8 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 D DG 3 1_555 C N4 DC 8 E DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 4 D DA 4 1_555 C N3 DT 7 E DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 4 D DA 4 1_555 C O4 DT 7 E DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 5 D DT 5 1_555 C N1 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 5 D DT 5 1_555 C N6 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 6 D DA 6 1_555 C N3 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 6 D DA 6 1_555 C O4 DT 5 E DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 7 D DT 7 1_555 C N1 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 7 D DT 7 1_555 C N6 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 8 D DC 8 1_555 C N1 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 8 D DC 8 1_555 C O6 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 8 D DC 8 1_555 C N2 DG 3 E DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 9 D DC 9 1_555 C N1 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 9 D DC 9 1_555 C O6 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 9 D DC 9 1_555 C N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 5HRB _atom_sites.fract_transf_matrix[1][1] 0.012858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MN A 1 201 1 MN MN . E 4 GOL A 1 202 1 GOL GOL . F 5 BME A 1 203 109 BME DTT . G 6 HOH A 1 301 218 HOH HOH . G 6 HOH A 2 302 41 HOH HOH . G 6 HOH A 3 303 1 HOH HOH . G 6 HOH A 4 304 92 HOH HOH . G 6 HOH A 5 305 93 HOH HOH . G 6 HOH A 6 306 161 HOH HOH . G 6 HOH A 7 307 21 HOH HOH . G 6 HOH A 8 308 150 HOH HOH . G 6 HOH A 9 309 50 HOH HOH . G 6 HOH A 10 310 107 HOH HOH . G 6 HOH A 11 311 72 HOH HOH . G 6 HOH A 12 312 210 HOH HOH . G 6 HOH A 13 313 202 HOH HOH . G 6 HOH A 14 314 40 HOH HOH . G 6 HOH A 15 315 172 HOH HOH . G 6 HOH A 16 316 137 HOH HOH . G 6 HOH A 17 317 187 HOH HOH . G 6 HOH A 18 318 85 HOH HOH . G 6 HOH A 19 319 152 HOH HOH . G 6 HOH A 20 320 109 HOH HOH . G 6 HOH A 21 321 132 HOH HOH . G 6 HOH A 22 322 226 HOH HOH . G 6 HOH A 23 323 146 HOH HOH . G 6 HOH A 24 324 48 HOH HOH . G 6 HOH A 25 325 201 HOH HOH . G 6 HOH A 26 326 177 HOH HOH . G 6 HOH A 27 327 49 HOH HOH . G 6 HOH A 28 328 178 HOH HOH . G 6 HOH A 29 329 169 HOH HOH . G 6 HOH A 30 330 182 HOH HOH . G 6 HOH A 31 331 27 HOH HOH . G 6 HOH A 32 332 176 HOH HOH . G 6 HOH A 33 333 117 HOH HOH . G 6 HOH A 34 334 70 HOH HOH . G 6 HOH A 35 335 134 HOH HOH . G 6 HOH A 36 336 16 HOH HOH . G 6 HOH A 37 337 6 HOH HOH . G 6 HOH A 38 338 154 HOH HOH . G 6 HOH A 39 339 86 HOH HOH . G 6 HOH A 40 340 131 HOH HOH . G 6 HOH A 41 341 11 HOH HOH . G 6 HOH A 42 342 28 HOH HOH . G 6 HOH A 43 343 116 HOH HOH . G 6 HOH A 44 344 9 HOH HOH . G 6 HOH A 45 345 3 HOH HOH . G 6 HOH A 46 346 120 HOH HOH . G 6 HOH A 47 347 71 HOH HOH . G 6 HOH A 48 348 163 HOH HOH . G 6 HOH A 49 349 35 HOH HOH . G 6 HOH A 50 350 38 HOH HOH . G 6 HOH A 51 351 186 HOH HOH . G 6 HOH A 52 352 10 HOH HOH . G 6 HOH A 53 353 37 HOH HOH . G 6 HOH A 54 354 115 HOH HOH . G 6 HOH A 55 355 18 HOH HOH . G 6 HOH A 56 356 156 HOH HOH . G 6 HOH A 57 357 53 HOH HOH . G 6 HOH A 58 358 4 HOH HOH . G 6 HOH A 59 359 112 HOH HOH . G 6 HOH A 60 360 8 HOH HOH . G 6 HOH A 61 361 225 HOH HOH . G 6 HOH A 62 362 195 HOH HOH . G 6 HOH A 63 363 157 HOH HOH . G 6 HOH A 64 364 105 HOH HOH . G 6 HOH A 65 365 207 HOH HOH . G 6 HOH A 66 366 57 HOH HOH . G 6 HOH A 67 367 2 HOH HOH . G 6 HOH A 68 368 15 HOH HOH . G 6 HOH A 69 369 114 HOH HOH . G 6 HOH A 70 370 94 HOH HOH . G 6 HOH A 71 371 20 HOH HOH . G 6 HOH A 72 372 13 HOH HOH . G 6 HOH A 73 373 143 HOH HOH . G 6 HOH A 74 374 111 HOH HOH . G 6 HOH A 75 375 74 HOH HOH . G 6 HOH A 76 376 19 HOH HOH . G 6 HOH A 77 377 80 HOH HOH . G 6 HOH A 78 378 206 HOH HOH . G 6 HOH A 79 379 29 HOH HOH . G 6 HOH A 80 380 76 HOH HOH . G 6 HOH A 81 381 139 HOH HOH . G 6 HOH A 82 382 160 HOH HOH . G 6 HOH A 83 383 63 HOH HOH . G 6 HOH A 84 384 205 HOH HOH . G 6 HOH A 85 385 36 HOH HOH . G 6 HOH A 86 386 175 HOH HOH . G 6 HOH A 87 387 60 HOH HOH . G 6 HOH A 88 388 52 HOH HOH . G 6 HOH A 89 389 103 HOH HOH . G 6 HOH A 90 390 17 HOH HOH . G 6 HOH A 91 391 227 HOH HOH . G 6 HOH A 92 392 32 HOH HOH . G 6 HOH A 93 393 209 HOH HOH . G 6 HOH A 94 394 81 HOH HOH . G 6 HOH A 95 395 110 HOH HOH . G 6 HOH A 96 396 124 HOH HOH . G 6 HOH A 97 397 101 HOH HOH . G 6 HOH A 98 398 14 HOH HOH . G 6 HOH A 99 399 55 HOH HOH . G 6 HOH A 100 400 47 HOH HOH . G 6 HOH A 101 401 144 HOH HOH . G 6 HOH A 102 402 217 HOH HOH . G 6 HOH A 103 403 135 HOH HOH . G 6 HOH A 104 404 22 HOH HOH . G 6 HOH A 105 405 39 HOH HOH . G 6 HOH A 106 406 64 HOH HOH . G 6 HOH A 107 407 26 HOH HOH . G 6 HOH A 108 408 153 HOH HOH . G 6 HOH A 109 409 33 HOH HOH . G 6 HOH A 110 410 84 HOH HOH . G 6 HOH A 111 411 77 HOH HOH . G 6 HOH A 112 412 7 HOH HOH . G 6 HOH A 113 413 194 HOH HOH . G 6 HOH A 114 414 62 HOH HOH . G 6 HOH A 115 415 162 HOH HOH . G 6 HOH A 116 416 104 HOH HOH . G 6 HOH A 117 417 159 HOH HOH . G 6 HOH A 118 418 42 HOH HOH . G 6 HOH A 119 419 219 HOH HOH . G 6 HOH A 120 420 56 HOH HOH . G 6 HOH A 121 421 171 HOH HOH . G 6 HOH A 122 422 168 HOH HOH . G 6 HOH A 123 423 212 HOH HOH . G 6 HOH A 124 424 166 HOH HOH . G 6 HOH A 125 425 208 HOH HOH . G 6 HOH A 126 426 211 HOH HOH . G 6 HOH A 127 427 88 HOH HOH . G 6 HOH A 128 428 214 HOH HOH . G 6 HOH A 129 429 155 HOH HOH . G 6 HOH A 130 430 138 HOH HOH . G 6 HOH A 131 431 167 HOH HOH . G 6 HOH A 132 432 200 HOH HOH . G 6 HOH A 133 433 12 HOH HOH . G 6 HOH A 134 434 203 HOH HOH . G 6 HOH A 135 435 133 HOH HOH . G 6 HOH A 136 436 220 HOH HOH . G 6 HOH A 137 437 119 HOH HOH . G 6 HOH A 138 438 87 HOH HOH . G 6 HOH A 139 439 197 HOH HOH . G 6 HOH A 140 440 141 HOH HOH . G 6 HOH A 141 441 196 HOH HOH . G 6 HOH A 142 442 221 HOH HOH . G 6 HOH A 143 443 222 HOH HOH . G 6 HOH A 144 444 170 HOH HOH . H 6 HOH D 1 101 165 HOH HOH . H 6 HOH D 2 102 148 HOH HOH . H 6 HOH D 3 103 23 HOH HOH . H 6 HOH D 4 104 46 HOH HOH . H 6 HOH D 5 105 98 HOH HOH . H 6 HOH D 6 106 91 HOH HOH . H 6 HOH D 7 107 130 HOH HOH . H 6 HOH D 8 108 61 HOH HOH . H 6 HOH D 9 109 99 HOH HOH . H 6 HOH D 10 110 215 HOH HOH . H 6 HOH D 11 111 83 HOH HOH . H 6 HOH D 12 112 59 HOH HOH . H 6 HOH D 13 113 44 HOH HOH . H 6 HOH D 14 114 180 HOH HOH . H 6 HOH D 15 115 108 HOH HOH . H 6 HOH D 16 116 228 HOH HOH . H 6 HOH D 17 117 95 HOH HOH . H 6 HOH D 18 118 140 HOH HOH . H 6 HOH D 19 119 73 HOH HOH . H 6 HOH D 20 120 125 HOH HOH . H 6 HOH D 21 121 106 HOH HOH . H 6 HOH D 22 122 66 HOH HOH . H 6 HOH D 23 123 102 HOH HOH . H 6 HOH D 24 124 34 HOH HOH . H 6 HOH D 25 125 97 HOH HOH . H 6 HOH D 26 126 127 HOH HOH . H 6 HOH D 27 127 151 HOH HOH . H 6 HOH D 28 128 58 HOH HOH . H 6 HOH D 29 129 149 HOH HOH . H 6 HOH D 30 130 183 HOH HOH . H 6 HOH D 31 131 67 HOH HOH . H 6 HOH D 32 132 184 HOH HOH . H 6 HOH D 33 133 68 HOH HOH . H 6 HOH D 34 134 30 HOH HOH . H 6 HOH D 35 135 164 HOH HOH . H 6 HOH D 36 136 193 HOH HOH . H 6 HOH D 37 137 51 HOH HOH . H 6 HOH D 38 138 188 HOH HOH . H 6 HOH D 39 139 65 HOH HOH . H 6 HOH D 40 140 189 HOH HOH . H 6 HOH D 41 141 147 HOH HOH . H 6 HOH D 42 142 190 HOH HOH . I 6 HOH E 1 101 78 HOH HOH . I 6 HOH E 2 102 100 HOH HOH . I 6 HOH E 3 103 24 HOH HOH . I 6 HOH E 4 104 96 HOH HOH . I 6 HOH E 5 105 75 HOH HOH . I 6 HOH E 6 106 216 HOH HOH . I 6 HOH E 7 107 5 HOH HOH . I 6 HOH E 8 108 123 HOH HOH . I 6 HOH E 9 109 204 HOH HOH . I 6 HOH E 10 110 179 HOH HOH . I 6 HOH E 11 111 122 HOH HOH . I 6 HOH E 12 112 121 HOH HOH . I 6 HOH E 13 113 113 HOH HOH . I 6 HOH E 14 114 145 HOH HOH . I 6 HOH E 15 115 192 HOH HOH . I 6 HOH E 16 116 224 HOH HOH . I 6 HOH E 17 117 129 HOH HOH . I 6 HOH E 18 118 43 HOH HOH . I 6 HOH E 19 119 126 HOH HOH . I 6 HOH E 20 120 128 HOH HOH . I 6 HOH E 21 121 79 HOH HOH . I 6 HOH E 22 122 191 HOH HOH . I 6 HOH E 23 123 54 HOH HOH . I 6 HOH E 24 124 82 HOH HOH . I 6 HOH E 25 125 118 HOH HOH . I 6 HOH E 26 126 185 HOH HOH . I 6 HOH E 27 127 198 HOH HOH . I 6 HOH E 28 128 213 HOH HOH . I 6 HOH E 29 129 199 HOH HOH . I 6 HOH E 30 130 223 HOH HOH . I 6 HOH E 31 131 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 5 29.252 43.409 -10.493 1 20.2 ? C1 BME 203 A 1 HETATM 2 C C2 BME . . . F 5 28.052 43.017 -11.339 1 21.03 ? C2 BME 203 A 1 HETATM 3 O O1 BME . . . F 5 29.467 44.821 -10.643 1 18.19 ? O1 BME 203 A 1 HETATM 4 S S2 BME . . . F 5 28.233 43.621 -13.025 1 23.72 ? S2 BME 203 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #